Revision 896
Added by Aaron Marcuse-Kubitza almost 13 years ago
| inputs/NYBG/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 21 | 21 |
MonthIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/determinationdate/_alt/2/_date/month",,120 |
| 22 | 22 |
YearIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/determinationdate/_alt/2/_date/year",,120 |
| 23 | 23 |
IdentifiedBy,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]:[determinationtype=Author,iscurrent=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?,119
|
| 24 |
Notes,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]:[determinationtype=Author,iscurrent=true]/notes","Brad: mapping OK; NY appears to be using this field for almost anything, but mostly internal collections notes",54 |
|
| 25 | 24 |
ScientificName,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname/_alt/1","Brad: Bob, Nick, please is this mapping OK?",134 |
| 26 | 25 |
ScientificNameAuthor,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Authority]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153 |
| 27 | 26 |
Class,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Class]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,144 |
| ... | ... | |
| 31 | 30 |
Order,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Order]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,145 |
| 32 | 31 |
Species,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Species]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,149 |
| 33 | 32 |
Phylum,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Subkingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,143 |
| 33 |
Notes,"/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=notes]]:[@fkey=tableRecord_ID]/definedvalue","Brad: mapping OK; NY appears to be using this field for almost anything, but mostly internal collections notes",54 |
|
| 34 | 34 |
UniqueNYInternalRecordNumber,"/{:[*_id/reference]/sourceaccessioncode,*_id/taxonoccurrence/aggregateoccurrence/*_id/plantobservation/authorplantcode}","Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19
|
| 35 | 35 |
FieldNumber,:[*_id/reference]/catalognumber_dwc,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?",53 |
| 36 | 36 |
CollectorNumber,:[*_id/reference]/collectornumber_dwc,"?; Brad: OMIT; db-specific element, not relevant to VB/VX",24 |
| inputs/SALVIAS/maps/VegBIEN.organisms.csv | ||
|---|---|---|
| 10 | 10 |
NoInd,/aggregateoccurrence/count,"Brad: Incorrect for VegX. This is a count of number of indiiduals for an *aggregate* observation. For VegBank, I'm not sure. Not exactly the same as stemCount. An individual tree could have 3 stems but would still only count as 1. We need to check with Bob on this." |
| 11 | 11 |
cover_percent,/aggregateoccurrence/cover, |
| 12 | 12 |
intercept_cm,"/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=interceptCm]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Incorrect for VegBank This is an aggregate observation. Used in line-intercept methodology only, describes the point along centerline at which an individual intercepts the center line of the plot. Used to determin relative abundance." |
| 13 |
Notes,"/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=notes]]:[@fkey=tableRecord_ID]/definedvalue", |
|
| 13 | 14 |
census_no,"/definedvalue[*_id/userdefined[tablename=taxonoccurrence,userdefinedname=censusNo]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Assigned by SALVIAS. 1 for first plot, then 2, 3, etc. I can't recall if we even have repeat censuses in SALVIAS. Probably not." |
| 14 | 15 |
Habit,"/definedvalue[*_id/userdefined[tablename=taxonoccurrence,userdefinedname=habit]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Incorrect for VegBank, correct for VegX. This is growth form (tree, shrub, herb, etc.). It is an observation of a trait." |
| 15 | 16 |
Ind,"/definedvalue[*_id/userdefined[tablename=taxonoccurrence,userdefinedname=individualCode]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot." |
| ... | ... | |
| 25 | 26 |
infra_rank_1,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Subspecies]/*_id/plantconcept/_name/first", |
| 26 | 27 |
infra_ep_1,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Subspecies]:[determinationtype=""Computer (automated)"",iscurrent=true]/*_id/plantconcept/_name/last", |
| 27 | 28 |
cfaff,"/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=cfAff]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank." |
| 28 |
Notes,"/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]:[determinationtype=Author,iscurrent=true]/notes", |
|
| 29 | 29 |
OrigFamily,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Family]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",Brad: OMIT |
| 30 | 30 |
OrigSpecies,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Species]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",Brad: OMIT |
| 31 | 31 |
PlotObsID,"/{aggregateoccurrence/*_id/plantobservation/authorplantcode,specimenreplicate:[*_id/reference]/sourceaccessioncode}","Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later."
|
| inputs/NYBG-CSV/maps/VegBIEN.organisms.csv | ||
|---|---|---|
| 18 | 18 |
PlantFungusDescription,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=plantFungusDescription]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Incorrect mapping to VB, also possibly to VX; this is the specimenDescription field, as used by this institution (NOT a standard DwC element). Very important! Bob, Nick, where would this go in VB and VX?" |
| 19 | 19 |
Substrate,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=substrate]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Incorrect mapping to VB and VX; refers to geological substrate or soils where specimen collected. Often concatenated with habitat, or included with specimen description. Bob, Nick, is there an element for this in VB/VX, or shall we just use userDefined?" |
| 20 | 20 |
Vegetation,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=vegetation]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Habitat'. Bob, Nick: keep as user defined or create special element?" |
| 21 |
Notes,"/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=notes]]:[@fkey=tableRecord_ID]/definedvalue","Brad: mapping OK; NY appears to be using this field for almost anything, but mostly internal collections notes" |
|
| 21 | 22 |
FieldNumber,/specimenreplicate:[*_id/reference]/catalognumber_dwc,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?" |
| 22 | 23 |
CollectorNumber,/specimenreplicate:[*_id/reference]/collectornumber_dwc,"Brad: OMIT; db-specific element, not relevant to VB/VX" |
| 23 | 24 |
Collector,/specimenreplicate:[*_id/reference]/verbatimcollectorname,Brad: Correct for VB. Nick: is there a way to specifically identify this party as collector of a specimen? |
| ... | ... | |
| 28 | 29 |
MonthIdentified,"/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/determinationdate/_date/month", |
| 29 | 30 |
YearIdentified,"/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/determinationdate/_date/year", |
| 30 | 31 |
IdentifiedBy,"/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]:[determinationtype=Author,iscurrent=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?
|
| 31 |
Notes,"/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]:[determinationtype=Author,iscurrent=true]/notes","Brad: mapping OK; NY appears to be using this field for almost anything, but mostly internal collections notes" |
|
| 32 | 32 |
ScientificName,"/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname/_alt/1","Brad: Bob, Nick, please is this mapping OK?" |
| 33 | 33 |
ScientificNameAuthor,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Authority]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author" |
| 34 | 34 |
Class,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Class]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname", |
| inputs/SALVIAS-CSV/maps/VegBIEN.organisms.csv | ||
|---|---|---|
| 20 | 20 |
no_of_individuals,/aggregateoccurrence/count,"Brad: Incorrect for VegX. This is a count of number of indiiduals for an *aggregate* observation. For VegBank, I'm not sure. Not exactly the same as stemCount. An individual tree could have 3 stems but would still only count as 1. We need to check with Bob on this." |
| 21 | 21 |
cover_percent,/aggregateoccurrence/cover, |
| 22 | 22 |
intercept_cm,"/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=interceptCm]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Incorrect for VegBank This is an aggregate observation. Used in line-intercept methodology only, describes the point along centerline at which an individual intercepts the center line of the plot. Used to determin relative abundance." |
| 23 |
notes,"/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=notes]]:[@fkey=tableRecord_ID]/definedvalue", |
|
| 23 | 24 |
census_no,"/definedvalue[*_id/userdefined[tablename=taxonoccurrence,userdefinedname=censusNo]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Assigned by SALVIAS. 1 for first plot, then 2, 3, etc. I can't recall if we even have repeat censuses in SALVIAS. Probably not." |
| 24 | 25 |
habit,"/definedvalue[*_id/userdefined[tablename=taxonoccurrence,userdefinedname=habit]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Incorrect for VegBank, correct for VegX. This is growth form (tree, shrub, herb, etc.). It is an observation of a trait." |
| 25 | 26 |
individual_code,"/definedvalue[*_id/userdefined[tablename=taxonoccurrence,userdefinedname=individualCode]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot." |
| ... | ... | |
| 34 | 35 |
infra_rank_1,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Subspecies]/*_id/plantconcept/_name/first", |
| 35 | 36 |
infra_ep_1,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Subspecies]:[determinationtype=""Computer (automated)"",iscurrent=true]/*_id/plantconcept/_name/last", |
| 36 | 37 |
cf_aff,"/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=cfAff]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank." |
| 37 |
notes,"/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]:[determinationtype=Author,iscurrent=true]/notes", |
|
| 38 | 38 |
orig_family,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Family]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",Brad: OMIT |
| 39 | 39 |
orig_species,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Species]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",Brad: OMIT |
| 40 | 40 |
OBSERVATION_ID,"/{aggregateoccurrence/*_id/plantobservation/authorplantcode,specimenreplicate:[*_id/reference]/sourceaccessioncode}","Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later."
|
| mappings/VegX-VegBIEN.organisms.csv | ||
|---|---|---|
| 85 | 85 |
/simpleUserdefined[name=count]/value,/aggregateoccurrence/count |
| 86 | 86 |
/simpleUserdefined[name=coverPercent]/value,/aggregateoccurrence/cover |
| 87 | 87 |
/simpleUserdefined[name=interceptCm]/value,"/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=interceptCm]]:[@fkey=tableRecord_ID]/definedvalue" |
| 88 |
/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/note/text,"/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=notes]]:[@fkey=tableRecord_ID]/definedvalue" |
|
| 88 | 89 |
/simpleUserdefined[name=censusNo]/value,"/definedvalue[*_id/userdefined[tablename=taxonoccurrence,userdefinedname=censusNo]]:[@fkey=tableRecord_ID]/definedvalue" |
| 89 | 90 |
/simpleUserdefined[name=habit]/value,"/definedvalue[*_id/userdefined[tablename=taxonoccurrence,userdefinedname=habit]]:[@fkey=tableRecord_ID]/definedvalue" |
| 90 | 91 |
/simpleUserdefined[name=individualCode]/value,"/definedvalue[*_id/userdefined[tablename=taxonoccurrence,userdefinedname=individualCode]]:[@fkey=tableRecord_ID]/definedvalue" |
| ... | ... | |
| 113 | 114 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/date/_date/month","/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/determinationdate/_date/month" |
| 114 | 115 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/date/_date/year","/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/determinationdate/_date/year" |
| 115 | 116 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/partyWithRole/*ID->/parties/party/individualName/{givenName/_namePart/{first,middle},surName/_namePart/last}","/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]:[determinationtype=Author,iscurrent=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}"
|
| 116 |
/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/note/text,"/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]:[determinationtype=Author,iscurrent=true]/notes" |
|
| 117 | 117 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonName)/Simple","/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname/_alt/1" |
| 118 | 118 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=auth])/Name","/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Authority]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname" |
| 119 | 119 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=cl])/Name","/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Class]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname" |
| mappings/for_review/VegX-VegBIEN.organisms.csv | ||
|---|---|---|
| 85 | 85 |
/simpleUserdefined[name=count]/value,//aggregateoccurrence/count |
| 86 | 86 |
/simpleUserdefined[name=coverPercent]/value,//aggregateoccurrence/cover |
| 87 | 87 |
/simpleUserdefined[name=interceptCm]/value,"//aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=interceptCm]]/definedvalue" |
| 88 |
//note/text,"//aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=notes]]/definedvalue" |
|
| 88 | 89 |
/simpleUserdefined[name=censusNo]/value,"/definedvalue[*_id/userdefined[tablename=taxonoccurrence,userdefinedname=censusNo]]/definedvalue" |
| 89 | 90 |
/simpleUserdefined[name=habit]/value,"/definedvalue[*_id/userdefined[tablename=taxonoccurrence,userdefinedname=habit]]/definedvalue" |
| 90 | 91 |
/simpleUserdefined[name=individualCode]/value,"/definedvalue[*_id/userdefined[tablename=taxonoccurrence,userdefinedname=individualCode]]/definedvalue" |
| ... | ... | |
| 113 | 114 |
//*s/taxonDetermination[role=identifier]/date/_date/month,/taxondetermination[rolecode=identifier]/determinationdate/_date/month |
| 114 | 115 |
//*s/taxonDetermination[role=identifier]/date/_date/year,/taxondetermination[rolecode=identifier]/determinationdate/_date/year |
| 115 | 116 |
"//parties/party/individualName/{givenName/_namePart/{first,middle},surName/_namePart/last}","/taxondetermination[rolecode=identifier]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}"
|
| 116 |
//note/text,/taxondetermination[rolecode=identifier]/notes |
|
| 117 | 117 |
//taxonName/Simple,/taxondetermination[rolecode=identifier]/*_id/plantconcept/*_id/*/plantname/_alt/1 |
| 118 | 118 |
//*s/taxonConcept[@code=auth]/Name,"/taxondetermination[rolecode=identifier,plantlevel=Authority]/*_id/plantconcept/*_id/*/plantname" |
| 119 | 119 |
//*s/taxonConcept[@code=cl]/Name,"/taxondetermination[rolecode=identifier,plantlevel=Class]/*_id/plantconcept/*_id/*/plantname" |
| mappings/for_review/DwC-VegBIEN.specimens.csv | ||
|---|---|---|
| 24 | 24 |
dateIdentified/_alt/2/_date/month,//taxonoccurrence/taxondetermination[rolecode=identifier]/determinationdate/_alt/2/_date/month,,120 |
| 25 | 25 |
dateIdentified/_alt/2/_date/year,//taxonoccurrence/taxondetermination[rolecode=identifier]/determinationdate/_alt/2/_date/year,,120 |
| 26 | 26 |
identifiedBy,"//taxonoccurrence/taxondetermination[rolecode=identifier]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?,119
|
| 27 |
fieldNotes,//taxonoccurrence/taxondetermination[rolecode=identifier]/notes,"Brad: mapping OK; NY appears to be using this field for almost anything, but mostly internal collections notes",54 |
|
| 28 | 27 |
scientificName,//taxonoccurrence/taxondetermination[rolecode=identifier]/*_id/plantconcept/*_id/*/plantname/_alt/1,"Brad: Bob, Nick, please is this mapping OK?",134 |
| 29 | 28 |
scientificNameAuthorship,"//taxonoccurrence/taxondetermination[rolecode=identifier,plantlevel=Authority]/*_id/plantconcept/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153 |
| 30 | 29 |
class,"//taxonoccurrence/taxondetermination[rolecode=identifier,plantlevel=Class]/*_id/plantconcept/*_id/*/plantname",,144 |
| ... | ... | |
| 34 | 33 |
order,"//taxonoccurrence/taxondetermination[rolecode=identifier,plantlevel=Order]/*_id/plantconcept/*_id/*/plantname",,145 |
| 35 | 34 |
specificEpithet,"//taxonoccurrence/taxondetermination[rolecode=identifier,plantlevel=Species]/*_id/plantconcept/*_id/*/plantname",,149 |
| 36 | 35 |
phylum,"//taxonoccurrence/taxondetermination[rolecode=identifier,plantlevel=Subkingdom]/*_id/plantconcept/*_id/*/plantname",,143 |
| 36 |
fieldNotes,"/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=notes]]/definedvalue","Brad: mapping OK; NY appears to be using this field for almost anything, but mostly internal collections notes",54 |
|
| 37 | 37 |
occurrenceID,"/{/sourceaccessioncode,*_id/taxonoccurrence/aggregateoccurrence/*_id/plantobservation/authorplantcode}","Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19
|
| 38 | 38 |
fieldNumber,/catalognumber_dwc,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?",53 |
| 39 | 39 |
individualID,/collectornumber_dwc,"Brad: OMIT; db-specific element, not relevant to VB/VX",24 |
| mappings/DwC-VegBIEN.specimens.csv | ||
|---|---|---|
| 1 |
"DwC::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list/","VegBIEN:/specimenreplicate","Comments","Order" |
|
| 2 |
"coordinatePrecision","/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationaccuracy",,89 |
|
| 3 |
"country","/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationplace(/*_id/namedplace[placesystem=""area|country|territory""])/placename","Brad: Required; reject record if this field NULL",63 |
|
| 4 |
"stateProvince","/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationplace(/*_id/namedplace[placesystem=""region|state|province""])/placename",,65 |
|
| 5 |
"county","/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationplace(/*_id/namedplace[placesystem=county])/placename",,66 |
|
| 6 |
"verbatimLocality","/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationplace/*_id/namedplace/placedescription","Brad: Correct for VB; Nick, is there no specific element for locality description in VegX? Definitely need one.",69 |
|
| 7 |
"verbatimLatitude","/*_id/taxonoccurrence/*_id/locationevent/*_id/location/reallatitude",,81 |
|
| 8 |
"verbatimLongitude","/*_id/taxonoccurrence/*_id/locationevent/*_id/location/reallongitude",,82 |
|
| 9 |
"maximumElevationInMeters","/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/max,elevationrange/_range/to}",,72
|
|
| 10 |
"minimumElevationInMeters","/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/min,elevationrange/_range/from}",,71
|
|
| 11 |
"eventDate","/*_id/taxonoccurrence/*_id/locationevent/obsstartdate",,44 |
|
| 12 |
"eventDate/_alt/1/_*/date","/*_id/taxonoccurrence/*_id/locationevent/obsstartdate/_alt/1/_*/date",,44 |
|
| 13 |
"eventDate/_alt/2/_date/day","/*_id/taxonoccurrence/*_id/locationevent/obsstartdate/_alt/2/_date/day",,44 |
|
| 14 |
"eventDate/_alt/2/_date/month","/*_id/taxonoccurrence/*_id/locationevent/obsstartdate/_alt/2/_date/month",,44 |
|
| 15 |
"eventDate/_alt/2/_date/year","/*_id/taxonoccurrence/*_id/locationevent/obsstartdate/_alt/2/_date/year",,44 |
|
| 16 |
"maximumDepthInMeters","/*_id/taxonoccurrence/*_id/locationevent/waterdepth/max",,75 |
|
| 17 |
"minimumDepthInMeters","/*_id/taxonoccurrence/*_id/locationevent/waterdepth/min",,74 |
|
| 18 |
"habitat","/*_id/taxonoccurrence/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=habitat]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",52 |
|
| 19 |
"bien.plantFungusDescription","/*_id/taxonoccurrence/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=plantFungusDescription]]:[@fkey=tableRecord_ID]/definedvalue",, |
|
| 20 |
"sex","/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=sex]]:[@fkey=tableRecord_ID]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",26 |
|
| 21 |
"dateIdentified","/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/determinationdate",,120 |
|
| 22 |
"dateIdentified/_alt/1/_*/date","/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/determinationdate/_alt/1/_*/date",,120 |
|
| 23 |
"dateIdentified/_alt/2/_date/day","/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/determinationdate/_alt/2/_date/day",,120 |
|
| 24 |
"dateIdentified/_alt/2/_date/month","/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/determinationdate/_alt/2/_date/month",,120 |
|
| 25 |
"dateIdentified/_alt/2/_date/year","/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/determinationdate/_alt/2/_date/year",,120 |
|
| 26 |
"identifiedBy","/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]:[determinationtype=Author,iscurrent=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}","Brad: Bob: does this look correct for VegBank?",119
|
|
| 27 |
"fieldNotes","/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]:[determinationtype=Author,iscurrent=true]/notes","Brad: mapping OK; NY appears to be using this field for almost anything, but mostly internal collections notes",54 |
|
| 28 |
"scientificName","/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname/_alt/1","Brad: Bob, Nick, please is this mapping OK?",134 |
|
| 29 |
"scientificNameAuthorship","/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Authority]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153 |
|
| 30 |
"class","/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Class]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,144 |
|
| 31 |
"family","/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Family]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,146 |
|
| 32 |
"genus","/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Genus]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,147 |
|
| 33 |
"kingdom","/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Kingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,142 |
|
| 34 |
"order","/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Order]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,145 |
|
| 35 |
"specificEpithet","/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Species]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,149 |
|
| 36 |
"phylum","/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Subkingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,143 |
|
| 37 |
"occurrenceID","/{:[*_id/reference]/sourceaccessioncode,*_id/taxonoccurrence/aggregateoccurrence/*_id/plantobservation/authorplantcode}","Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19
|
|
| 38 |
"fieldNumber",":[*_id/reference]/catalognumber_dwc","Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?",53 |
|
| 39 |
"individualID",":[*_id/reference]/collectornumber_dwc","Brad: OMIT; db-specific element, not relevant to VB/VX",24 |
|
| 40 |
"georeferencedBy",":[*_id/reference]/verbatimcollectorname","Brad: Correct for VB. Nick: is there a way to specifically identify this party as collector of a specimen?",94 |
|
| 41 |
"institutionCode",":[*_id/reference]/{museum_id/party/organizationname/_name/first}",,11
|
|
| 42 |
"collectionCode",":[*_id/reference]/{museum_id/party/organizationname/_name/last,collectioncode_dwc}","Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name",12
|
|
| 43 |
"acceptedNameUsage",,,135 |
|
| 44 |
"acceptedNameUsageID",,,128 |
|
| 45 |
"associatedMedia",,,36 |
|
| 46 |
"associatedOccurrences",,,38 |
|
| 47 |
"associatedReferences",,,37 |
|
| 48 |
"associatedSequences",,,39 |
|
| 49 |
"associatedTaxa",,,40 |
|
| 50 |
"basisOfRecord",,"Brad: OMIT? See http://rs.tdwg.org/dwc/terms/index.htm#basisOfRecord for definition of this term.",15 |
|
| 51 |
"bed",,,117 |
|
| 52 |
"behavior",,,29 |
|
| 53 |
"catalogNumber",,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",20 |
|
| 54 |
"collectionID",,,9 |
|
| 55 |
"continent",,"Brad: OMIT",59 |
|
| 56 |
"coordinateUncertaintyInMeters",,,88 |
|
| 57 |
"countryCode",,,64 |
|
| 58 |
"dataGeneralizations",,,17 |
|
| 59 |
"datasetID",,,10 |
|
| 60 |
"datasetName",,,13 |
|
| 61 |
"day",,"Brad: OMIT",50 |
|
| 62 |
"dcterms:accessRights",,,5 |
|
| 63 |
"dcterms:bibliographicCitation",,,6 |
|
| 64 |
"dcterms:language",,,2 |
|
| 65 |
"dcterms:modified",,"Brad: Mapping to VegX is incorrect. I think is this merely an internal timestamp indicated when record last modified, not necessarily when determination (taxon name) last modified. Probably we should omit this field, although might be useful for updating changed records from this source.",1 |
|
| 66 |
"dcterms:references",,,7 |
|
| 67 |
"dcterms:rights",,,3 |
|
| 68 |
"dcterms:rightsHolder",,,4 |
|
| 69 |
"dcterms:type",,,0 |
|
| 70 |
"decimalLatitude",,,85 |
|
| 71 |
"decimalLongitude",,,86 |
|
| 72 |
"disposition",,,33 |
|
| 73 |
"dynamicProperties",,,18 |
|
| 74 |
"earliestAgeOrLowestStage",,,109 |
|
| 75 |
"earliestEonOrLowestEonothem",,,101 |
|
| 76 |
"earliestEpochOrLowestSeries",,,107 |
|
| 77 |
"earliestEraOrLowestErathem",,,103 |
|
| 78 |
"earliestPeriodOrLowestSystem",,,105 |
|
| 79 |
"endDayOfYear",,,47 |
|
| 80 |
"establishmentMeans",,,30 |
|
| 81 |
"eventID",,,41 |
|
| 82 |
"eventRemarks",,,55 |
|
| 83 |
"eventTime",,"Brad: OMIT",45 |
|
| 84 |
"footprintSRS",,,92 |
|
| 85 |
"footprintSpatialFit",,,93 |
|
| 86 |
"footprintWKT",,,91 |
|
| 87 |
"formation",,,115 |
|
| 88 |
"geodeticDatum",,,87 |
|
| 89 |
"geologicalContextID",,,100 |
|
| 90 |
"georeferenceProtocol",,,96 |
|
| 91 |
"georeferenceRemarks",,,99 |
|
| 92 |
"georeferenceSources",,,97 |
|
| 93 |
"georeferenceVerificationStatus",,,98 |
|
| 94 |
"georeferencedDate",,,95 |
|
| 95 |
"group",,,114 |
|
| 96 |
"higherClassification",,,141 |
|
| 97 |
"higherGeography",,,58 |
|
| 98 |
"higherGeographyID",,,57 |
|
| 99 |
"highestBiostratigraphicZone",,,112 |
|
| 100 |
"identificationID",,,118 |
|
| 101 |
"identificationQualifier",,,124 |
|
| 102 |
"identificationReferences",,,121 |
|
| 103 |
"identificationRemarks",,,123 |
|
| 104 |
"identificationVerificationStatus",,,122 |
|
| 105 |
"individualCount",,"Brad: OMIT; not relevant for DwC plant specimen data.",25 |
|
| 106 |
"informationWithheld",,,16 |
|
| 107 |
"infraspecificEpithet",,,150 |
|
| 108 |
"institutionID",,,8 |
|
| 109 |
"island",,,62 |
|
| 110 |
"islandGroup",,,61 |
|
| 111 |
"latestAgeOrHighestStage",,,110 |
|
| 112 |
"latestEonOrHighestEonothem",,,102 |
|
| 113 |
"latestEpochOrHighestSeries",,,108 |
|
| 114 |
"latestEraOrHighestErathem",,,104 |
|
| 115 |
"latestPeriodOrHighestSystem",,,106 |
|
| 116 |
"lifeStage",,,27 |
|
| 117 |
"lithostratigraphicTerms",,,113 |
|
| 118 |
"locality",,,68 |
|
| 119 |
"locationAccordingTo",,,78 |
|
| 120 |
"locationID",,,56 |
|
| 121 |
"locationRemarks",,,79 |
|
| 122 |
"lowestBiostratigraphicZone",,,111 |
|
| 123 |
"maximumDistanceAboveSurfaceInMeters",,,77 |
|
| 124 |
"measurementAccuracy",,,169 |
|
| 125 |
"measurementDeterminedBy",,,172 |
|
| 126 |
"measurementDeterminedDate",,,171 |
|
| 127 |
"measurementID",,,166 |
|
| 128 |
"measurementMethod",,,173 |
|
| 129 |
"measurementRemarks",,,174 |
|
| 130 |
"measurementType",,,167 |
|
| 131 |
"measurementUnit",,,170 |
|
| 132 |
"measurementValue",,,168 |
|
| 133 |
"member",,,116 |
|
| 134 |
"minimumDistanceAboveSurfaceInMeters",,,76 |
|
| 135 |
"month",,,49 |
|
| 136 |
"municipality",,,67 |
|
| 137 |
"nameAccordingTo",,,138 |
|
| 138 |
"nameAccordingToID",,,131 |
|
| 139 |
"namePublishedIn",,,139 |
|
| 140 |
"namePublishedInID",,,132 |
|
| 141 |
"namePublishedInYear",,,140 |
|
| 142 |
"nomenclaturalCode",,,155 |
|
| 143 |
"nomenclaturalStatus",,,157 |
|
| 144 |
"occurrenceRemarks",,,21 |
|
| 145 |
"occurrenceStatus",,,31 |
|
| 146 |
"originalNameUsage",,,137 |
|
| 147 |
"originalNameUsageID",,,130 |
|
| 148 |
"otherCatalogNumbers",,,34 |
|
| 149 |
"ownerInstitutionCode",,,14 |
|
| 150 |
"parentNameUsage",,,136 |
|
| 151 |
"parentNameUsageID",,,129 |
|
| 152 |
"pointRadiusSpatialFit",,,90 |
|
| 153 |
"preparations",,"Brad: OMIT",32 |
|
| 154 |
"previousIdentifications",,"Brad: OMIT",35 |
|
| 155 |
"recordNumber",,,22 |
|
| 156 |
"recordedBy",,,23 |
|
| 157 |
"relatedResourceID",,"Brad: OMIT",161 |
|
| 158 |
"relationshipAccordingTo",,,163 |
|
| 159 |
"relationshipEstablishedDate",,,164 |
|
| 160 |
"relationshipOfResource",,"Brad: OMIT",162 |
|
| 161 |
"relationshipRemarks",,,165 |
|
| 162 |
"reproductiveCondition",,,28 |
|
| 163 |
"resourceID",,,160 |
|
| 164 |
"resourceRelationshipID",,,159 |
|
| 165 |
"samplingEffort",,,43 |
|
| 166 |
"samplingProtocol",,,42 |
|
| 167 |
"scientificNameID",,,127 |
|
| 168 |
"startDayOfYear",,,46 |
|
| 169 |
"subgenus",,,148 |
|
| 170 |
"taxonConceptID",,,133 |
|
| 171 |
"taxonID",,,126 |
|
| 172 |
"taxonRank",,,151 |
|
| 173 |
"taxonRemarks",,,158 |
|
| 174 |
"taxonomicStatus",,,156 |
|
| 175 |
"typeStatus",,"Brad: OMIT (?). Indicates whether this specimen served as type for taxon name. Probably not relevant for BIEN",125 |
|
| 176 |
"verbatimCoordinateSystem",,,83 |
|
| 177 |
"verbatimCoordinates",,,80 |
|
| 178 |
"verbatimDepth",,,73 |
|
| 179 |
"verbatimElevation",,,70 |
|
| 180 |
"verbatimEventDate",,,51 |
|
| 181 |
"verbatimSRS",,,84 |
|
| 182 |
"verbatimTaxonRank",,,152 |
|
| 183 |
"vernacularName",,,154 |
|
| 184 |
"waterBody",,,60 |
|
| 185 |
"year",,,48 |
|
| 1 |
"DwC::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list/",VegBIEN:/specimenreplicate,Comments,Order |
|
| 2 |
coordinatePrecision,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationaccuracy,,89 |
|
| 3 |
country,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationplace(/*_id/namedplace[placesystem=""area|country|territory""])/placename",Brad: Required; reject record if this field NULL,63 |
|
| 4 |
stateProvince,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationplace(/*_id/namedplace[placesystem=""region|state|province""])/placename",,65 |
|
| 5 |
county,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationplace(/*_id/namedplace[placesystem=county])/placename,,66 |
|
| 6 |
verbatimLocality,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationplace/*_id/namedplace/placedescription,"Brad: Correct for VB; Nick, is there no specific element for locality description in VegX? Definitely need one.",69 |
|
| 7 |
verbatimLatitude,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/reallatitude,,81 |
|
| 8 |
verbatimLongitude,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/reallongitude,,82 |
|
| 9 |
maximumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/max,elevationrange/_range/to}",,72
|
|
| 10 |
minimumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/min,elevationrange/_range/from}",,71
|
|
| 11 |
eventDate,/*_id/taxonoccurrence/*_id/locationevent/obsstartdate,,44 |
|
| 12 |
eventDate/_alt/1/_*/date,/*_id/taxonoccurrence/*_id/locationevent/obsstartdate/_alt/1/_*/date,,44 |
|
| 13 |
eventDate/_alt/2/_date/day,/*_id/taxonoccurrence/*_id/locationevent/obsstartdate/_alt/2/_date/day,,44 |
|
| 14 |
eventDate/_alt/2/_date/month,/*_id/taxonoccurrence/*_id/locationevent/obsstartdate/_alt/2/_date/month,,44 |
|
| 15 |
eventDate/_alt/2/_date/year,/*_id/taxonoccurrence/*_id/locationevent/obsstartdate/_alt/2/_date/year,,44 |
|
| 16 |
maximumDepthInMeters,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/max,,75 |
|
| 17 |
minimumDepthInMeters,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/min,,74 |
|
| 18 |
habitat,"/*_id/taxonoccurrence/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=habitat]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",52 |
|
| 19 |
bien.plantFungusDescription,"/*_id/taxonoccurrence/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=plantFungusDescription]]:[@fkey=tableRecord_ID]/definedvalue",, |
|
| 20 |
sex,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=sex]]:[@fkey=tableRecord_ID]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",26 |
|
| 21 |
dateIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/determinationdate",,120 |
|
| 22 |
dateIdentified/_alt/1/_*/date,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/determinationdate/_alt/1/_*/date",,120 |
|
| 23 |
dateIdentified/_alt/2/_date/day,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/determinationdate/_alt/2/_date/day",,120 |
|
| 24 |
dateIdentified/_alt/2/_date/month,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/determinationdate/_alt/2/_date/month",,120 |
|
| 25 |
dateIdentified/_alt/2/_date/year,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/determinationdate/_alt/2/_date/year",,120 |
|
| 26 |
identifiedBy,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]:[determinationtype=Author,iscurrent=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?,119
|
|
| 27 |
scientificName,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname/_alt/1","Brad: Bob, Nick, please is this mapping OK?",134 |
|
| 28 |
scientificNameAuthorship,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Authority]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153 |
|
| 29 |
class,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Class]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,144 |
|
| 30 |
family,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Family]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,146 |
|
| 31 |
genus,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Genus]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,147 |
|
| 32 |
kingdom,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Kingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,142 |
|
| 33 |
order,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Order]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,145 |
|
| 34 |
specificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Species]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,149 |
|
| 35 |
phylum,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Subkingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,143 |
|
| 36 |
fieldNotes,"/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=notes]]:[@fkey=tableRecord_ID]/definedvalue","Brad: mapping OK; NY appears to be using this field for almost anything, but mostly internal collections notes",54 |
|
| 37 |
occurrenceID,"/{:[*_id/reference]/sourceaccessioncode,*_id/taxonoccurrence/aggregateoccurrence/*_id/plantobservation/authorplantcode}","Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19
|
|
| 38 |
fieldNumber,:[*_id/reference]/catalognumber_dwc,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?",53 |
|
| 39 |
individualID,:[*_id/reference]/collectornumber_dwc,"Brad: OMIT; db-specific element, not relevant to VB/VX",24 |
|
| 40 |
georeferencedBy,:[*_id/reference]/verbatimcollectorname,Brad: Correct for VB. Nick: is there a way to specifically identify this party as collector of a specimen?,94 |
|
| 41 |
institutionCode,:[*_id/reference]/{museum_id/party/organizationname/_name/first},,11
|
|
| 42 |
collectionCode,":[*_id/reference]/{museum_id/party/organizationname/_name/last,collectioncode_dwc}",Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12
|
|
| 43 |
acceptedNameUsage,,,135 |
|
| 44 |
acceptedNameUsageID,,,128 |
|
| 45 |
associatedMedia,,,36 |
|
| 46 |
associatedOccurrences,,,38 |
|
| 47 |
associatedReferences,,,37 |
|
| 48 |
associatedSequences,,,39 |
|
| 49 |
associatedTaxa,,,40 |
|
| 50 |
basisOfRecord,,Brad: OMIT? See http://rs.tdwg.org/dwc/terms/index.htm#basisOfRecord for definition of this term.,15 |
|
| 51 |
bed,,,117 |
|
| 52 |
behavior,,,29 |
|
| 53 |
catalogNumber,,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",20 |
|
| 54 |
collectionID,,,9 |
|
| 55 |
continent,,Brad: OMIT,59 |
|
| 56 |
coordinateUncertaintyInMeters,,,88 |
|
| 57 |
countryCode,,,64 |
|
| 58 |
dataGeneralizations,,,17 |
|
| 59 |
datasetID,,,10 |
|
| 60 |
datasetName,,,13 |
|
| 61 |
day,,Brad: OMIT,50 |
|
| 62 |
dcterms:accessRights,,,5 |
|
| 63 |
dcterms:bibliographicCitation,,,6 |
|
| 64 |
dcterms:language,,,2 |
|
| 65 |
dcterms:modified,,"Brad: Mapping to VegX is incorrect. I think is this merely an internal timestamp indicated when record last modified, not necessarily when determination (taxon name) last modified. Probably we should omit this field, although might be useful for updating changed records from this source.",1 |
|
| 66 |
dcterms:references,,,7 |
|
| 67 |
dcterms:rights,,,3 |
|
| 68 |
dcterms:rightsHolder,,,4 |
|
| 69 |
dcterms:type,,,0 |
|
| 70 |
decimalLatitude,,,85 |
|
| 71 |
decimalLongitude,,,86 |
|
| 72 |
disposition,,,33 |
|
| 73 |
dynamicProperties,,,18 |
|
| 74 |
earliestAgeOrLowestStage,,,109 |
|
| 75 |
earliestEonOrLowestEonothem,,,101 |
|
| 76 |
earliestEpochOrLowestSeries,,,107 |
|
| 77 |
earliestEraOrLowestErathem,,,103 |
|
| 78 |
earliestPeriodOrLowestSystem,,,105 |
|
| 79 |
endDayOfYear,,,47 |
|
| 80 |
establishmentMeans,,,30 |
|
| 81 |
eventID,,,41 |
|
| 82 |
eventRemarks,,,55 |
|
| 83 |
eventTime,,Brad: OMIT,45 |
|
| 84 |
footprintSRS,,,92 |
|
| 85 |
footprintSpatialFit,,,93 |
|
| 86 |
footprintWKT,,,91 |
|
| 87 |
formation,,,115 |
|
| 88 |
geodeticDatum,,,87 |
|
| 89 |
geologicalContextID,,,100 |
|
| 90 |
georeferenceProtocol,,,96 |
|
| 91 |
georeferenceRemarks,,,99 |
|
| 92 |
georeferenceSources,,,97 |
|
| 93 |
georeferenceVerificationStatus,,,98 |
|
| 94 |
georeferencedDate,,,95 |
|
| 95 |
group,,,114 |
|
| 96 |
higherClassification,,,141 |
|
| 97 |
higherGeography,,,58 |
|
| 98 |
higherGeographyID,,,57 |
|
| 99 |
highestBiostratigraphicZone,,,112 |
|
| 100 |
identificationID,,,118 |
|
| 101 |
identificationQualifier,,,124 |
|
| 102 |
identificationReferences,,,121 |
|
| 103 |
identificationRemarks,,,123 |
|
| 104 |
identificationVerificationStatus,,,122 |
|
| 105 |
individualCount,,Brad: OMIT; not relevant for DwC plant specimen data.,25 |
|
| 106 |
informationWithheld,,,16 |
|
| 107 |
infraspecificEpithet,,,150 |
|
| 108 |
institutionID,,,8 |
|
| 109 |
island,,,62 |
|
| 110 |
islandGroup,,,61 |
|
| 111 |
latestAgeOrHighestStage,,,110 |
|
| 112 |
latestEonOrHighestEonothem,,,102 |
|
| 113 |
latestEpochOrHighestSeries,,,108 |
|
| 114 |
latestEraOrHighestErathem,,,104 |
|
| 115 |
latestPeriodOrHighestSystem,,,106 |
|
| 116 |
lifeStage,,,27 |
|
| 117 |
lithostratigraphicTerms,,,113 |
|
| 118 |
locality,,,68 |
|
| 119 |
locationAccordingTo,,,78 |
|
| 120 |
locationID,,,56 |
|
| 121 |
locationRemarks,,,79 |
|
| 122 |
lowestBiostratigraphicZone,,,111 |
|
| 123 |
maximumDistanceAboveSurfaceInMeters,,,77 |
|
| 124 |
measurementAccuracy,,,169 |
|
| 125 |
measurementDeterminedBy,,,172 |
|
| 126 |
measurementDeterminedDate,,,171 |
|
| 127 |
measurementID,,,166 |
|
| 128 |
measurementMethod,,,173 |
|
| 129 |
measurementRemarks,,,174 |
|
| 130 |
measurementType,,,167 |
|
| 131 |
measurementUnit,,,170 |
|
| 132 |
measurementValue,,,168 |
|
| 133 |
member,,,116 |
|
| 134 |
minimumDistanceAboveSurfaceInMeters,,,76 |
|
| 135 |
month,,,49 |
|
| 136 |
municipality,,,67 |
|
| 137 |
nameAccordingTo,,,138 |
|
| 138 |
nameAccordingToID,,,131 |
|
| 139 |
namePublishedIn,,,139 |
|
| 140 |
namePublishedInID,,,132 |
|
| 141 |
namePublishedInYear,,,140 |
|
| 142 |
nomenclaturalCode,,,155 |
|
| 143 |
nomenclaturalStatus,,,157 |
|
| 144 |
occurrenceRemarks,,,21 |
|
| 145 |
occurrenceStatus,,,31 |
|
| 146 |
originalNameUsage,,,137 |
|
| 147 |
originalNameUsageID,,,130 |
|
| 148 |
otherCatalogNumbers,,,34 |
|
| 149 |
ownerInstitutionCode,,,14 |
|
| 150 |
parentNameUsage,,,136 |
|
| 151 |
parentNameUsageID,,,129 |
|
| 152 |
pointRadiusSpatialFit,,,90 |
|
| 153 |
preparations,,Brad: OMIT,32 |
|
| 154 |
previousIdentifications,,Brad: OMIT,35 |
|
| 155 |
recordNumber,,,22 |
|
| 156 |
recordedBy,,,23 |
|
| 157 |
relatedResourceID,,Brad: OMIT,161 |
|
| 158 |
relationshipAccordingTo,,,163 |
|
| 159 |
relationshipEstablishedDate,,,164 |
|
| 160 |
relationshipOfResource,,Brad: OMIT,162 |
|
| 161 |
relationshipRemarks,,,165 |
|
| 162 |
reproductiveCondition,,,28 |
|
| 163 |
resourceID,,,160 |
|
| 164 |
resourceRelationshipID,,,159 |
|
| 165 |
samplingEffort,,,43 |
|
| 166 |
samplingProtocol,,,42 |
|
| 167 |
scientificNameID,,,127 |
|
| 168 |
startDayOfYear,,,46 |
|
| 169 |
subgenus,,,148 |
|
| 170 |
taxonConceptID,,,133 |
|
| 171 |
taxonID,,,126 |
|
| 172 |
taxonRank,,,151 |
|
| 173 |
taxonRemarks,,,158 |
|
| 174 |
taxonomicStatus,,,156 |
|
| 175 |
typeStatus,,Brad: OMIT (?). Indicates whether this specimen served as type for taxon name. Probably not relevant for BIEN,125 |
|
| 176 |
verbatimCoordinateSystem,,,83 |
|
| 177 |
verbatimCoordinates,,,80 |
|
| 178 |
verbatimDepth,,,73 |
|
| 179 |
verbatimElevation,,,70 |
|
| 180 |
verbatimEventDate,,,51 |
|
| 181 |
verbatimSRS,,,84 |
|
| 182 |
verbatimTaxonRank,,,152 |
|
| 183 |
vernacularName,,,154 |
|
| 184 |
waterBody,,,60 |
|
| 185 |
year,,,48 |
|
Also available in: Unified diff
mappings to VegBIEN: Don't map notes to taxondetermination because some organisms have notes but no species name