| 1 |
7555
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aaronmk
|
HVAA,VegBIEN:/_setDefault:[source_id/source/shortname/_env:[name=source]]/path/_simplifyPath:[next=parent_id]/path,Comments
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| 2 |
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catalogNumber,"/_if[@name=""if specimen""]/cond/_exists",
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| 3 |
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symbiotaId,"/_if[@name=""if specimen""]/cond/_exists",
|
| 4 |
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institutionCode,"/_if[@name=""if specimen""]/else/source/shortname/_first/1",
|
| 5 |
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symbiotaId,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/1",
|
| 6 |
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catalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/cond/_exists",
|
| 7 |
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catalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1/_if[@name=""if specimen""]/cond/_exists",
|
| 8 |
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symbiotaId,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1/_if[@name=""if specimen""]/cond/_exists",
|
| 9 |
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institutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1/_if[@name=""if specimen""]/then/_first/2",
|
| 10 |
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collectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/2/_join/1",
|
| 11 |
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catalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/3/_if[@name=""if indirect voucher""]/else",
|
| 12 |
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rights,/location/accessconditions,
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| 13 |
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accessRights,/location/accesslevel,
|
| 14 |
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verbatimElevation,"/location/elevation_m/_alt/1/_units:[to=m,to=]/value",
|
| 15 |
7703
|
aaronmk
|
minimumElevationInMeters,/location/elevation_m/_alt/2/_avg/1,
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| 16 |
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maximumElevationInMeters,/location/elevation_m/_alt/2/_avg/2,
|
| 17 |
7555
|
aaronmk
|
fieldNumber,"/location/iscultivated/_or/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",
|
| 18 |
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recordNumber,"/location/iscultivated/_or/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",
|
| 19 |
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symbiotaId,"/location/iscultivated/_or/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",
|
| 20 |
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locality,/location/iscultivated/_or/2/_locationnarrative_is_cultivated/locationnarrative/_join/1,
|
| 21 |
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habitat,/location/iscultivated/_or/2/_locationnarrative_is_cultivated/locationnarrative/_join/3,
|
| 22 |
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samplingProtocol,/location/locationevent/*_id/method/name,
|
| 23 |
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eventDate,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/cond/_exists",
|
| 24 |
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eventDate,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsenddate/_alt/2/_dateRangeEnd/value",
|
| 25 |
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eventDate,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsstartdate/_alt/2/_dateRangeStart/value",
|
| 26 |
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eventDate,/location/locationevent/obsenddate/_alt/2/_dateRangeEnd/value,
|
| 27 |
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eventDate,/location/locationevent/obsstartdate/_alt/2/_dateRangeStart/value,
|
| 28 |
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dateIdentified,"/location/locationevent/taxonoccurrence/_if[@name=""if has accepted name""]/then/taxondetermination:[determinationtype=accepted]/determinationdate/_alt/1/_dateRangeStart/value",
|
| 29 |
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taxonRemarks,"/location/locationevent/taxonoccurrence/_if[@name=""if has accepted name""]/then/taxondetermination:[determinationtype=accepted]/notes",
|
| 30 |
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identificationQualifier,"/location/locationevent/taxonoccurrence/_if[@name=""if has accepted name""]/then/taxondetermination:[determinationtype=accepted]/taxonfit",
|
| 31 |
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individualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count,
|
| 32 |
7715
|
aaronmk
|
occurrenceRemarks,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1/_merge/1,
|
| 33 |
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dynamicProperties,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1/_merge/2,Contains occurrenceRemarks data
|
| 34 |
7555
|
aaronmk
|
fieldNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/2,
|
| 35 |
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recordNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/2,
|
| 36 |
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sex,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections"
|
| 37 |
7610
|
aaronmk
|
reproductiveCondition,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/reproductivecondition,
|
| 38 |
7555
|
aaronmk
|
catalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else",
|
| 39 |
7712
|
aaronmk
|
collectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_alt/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name
|
| 40 |
7555
|
aaronmk
|
fieldNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_if[@name=""if indirect voucher""]/else",
|
| 41 |
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recordNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_if[@name=""if indirect voucher""]/else",
|
| 42 |
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catalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/cond/_exists",
|
| 43 |
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symbiotaId,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/cond/_exists",
|
| 44 |
|
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institutionCode,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/then/name/_first/2",
|
| 45 |
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institutionCode,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/then/sourcename/name/_first/2/_split:[separator=""[,;] *""]/value",
|
| 46 |
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symbiotaId,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode,
|
| 47 |
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fieldNumber,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/2/_first/3",
|
| 48 |
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recordNumber,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/2/_first/3",
|
| 49 |
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scientificName,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/3/_first/2",
|
| 50 |
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recordedBy,/location/locationevent/taxonoccurrence/collector_id/party/fullname,
|
| 51 |
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fieldNumber,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",
|
| 52 |
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recordNumber,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",
|
| 53 |
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symbiotaId,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",
|
| 54 |
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establishmentMeans,"/location/locationevent/taxonoccurrence/iscultivated/_alt/2/_map:[cultivated=t,wild=f,*=]/value",
|
| 55 |
|
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establishmentMeans,"/location/locationevent/taxonoccurrence/isnative/_map:[native=t,exotic=f,*=]/value",
|
| 56 |
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symbiotaId,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/3,
|
| 57 |
|
|
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/fullname,
|
| 58 |
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|
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/_if[@name=""if has explicit parent""]/else/rank",
|
| 59 |
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|
specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet",
|
| 60 |
|
|
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet",
|
| 61 |
|
|
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet",
|
| 62 |
|
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infraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/taxonepithet,
|
| 63 |
|
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taxonRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/rank,
|
| 64 |
|
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taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonepithet/_if[@name=""if taxonomic name is epithet""]/cond/_alt:[2=true]/1/_taxonomic_name_is_epithet/rank",
|
| 65 |
|
|
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/prefix/_taxon_family_require_std/family,
|
| 66 |
|
|
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/1,
|
| 67 |
|
|
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2,
|
| 68 |
|
|
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1,
|
| 69 |
|
|
infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond",
|
| 70 |
|
|
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then",
|
| 71 |
|
|
infraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2,
|
| 72 |
|
|
scientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/2,
|
| 73 |
|
|
scientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/author,
|
| 74 |
|
|
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/family,
|
| 75 |
|
|
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus,
|
| 76 |
|
|
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet,
|
| 77 |
|
|
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/taxonomicname,
|
| 78 |
|
|
taxonRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/verbatimrank,
|
| 79 |
|
|
dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/1/_dateRangeStart/value,
|
| 80 |
|
|
taxonRemarks,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/notes,
|
| 81 |
|
|
identificationQualifier,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/taxonfit,
|
| 82 |
|
|
catalogNumber,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then",
|
| 83 |
|
|
fieldNumber,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/collectionnumber/_if[@name=""if indirect voucher""]/then",
|
| 84 |
|
|
recordNumber,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/collectionnumber/_if[@name=""if indirect voucher""]/then",
|
| 85 |
|
|
locality,/location/locationnarrative/_merge/1,
|
| 86 |
|
|
habitat,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?"
|
| 87 |
8078
|
aaronmk
|
locationRemarks,/location/locationnarrative/_merge/4,
|
| 88 |
7555
|
aaronmk
|
coordinateUncertaintyInMeters,/location/locationplace/*_id/place/*_id/coordinates/coordsaccuracy_m/_noCV/value,
|
| 89 |
|
|
footprintWKT,/location/locationplace/*_id/place/*_id/coordinates/footprintgeometry_dwc,
|
| 90 |
|
|
decimalLatitude,"/location/locationplace/*_id/place/*_id/coordinates/latitude_deg/_nullIf:[null=0,type=float]/value",
|
| 91 |
|
|
decimalLongitude,"/location/locationplace/*_id/place/*_id/coordinates/longitude_deg/_nullIf:[null=0,type=float]/value",
|
| 92 |
|
|
verbatimCoordinates,/location/locationplace/*_id/place/*_id/coordinates/verbatimcoordinates,
|
| 93 |
|
|
country,/location/locationplace/*_id/place/country,
|
| 94 |
|
|
county,/location/locationplace/*_id/place/county,
|
| 95 |
|
|
decimalLatitude,"/location/locationplace/*_id/place/matched_place_id/place:[.,source_id/source/shortname=geoscrub]/*_id/coordinates:[source_id/source/shortname=geoscrub]/_first/2/latitude_deg/_nullIf:[null=0,type=float]/value",""".,"" sorts it with other coordinates mappings"
|
| 96 |
|
|
decimalLongitude,"/location/locationplace/*_id/place/matched_place_id/place:[.,source_id/source/shortname=geoscrub]/*_id/coordinates:[source_id/source/shortname=geoscrub]/_first/2/longitude_deg/_nullIf:[null=0,type=float]/value",""".,"" sorts it with other coordinates mappings"
|
| 97 |
|
|
country,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/country/_first/2,
|
| 98 |
|
|
county,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/county/_first/2,
|
| 99 |
|
|
stateProvince,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/stateprovince/_first/2,
|
| 100 |
|
|
stateProvince,/location/locationplace/*_id/place/stateprovince,
|
| 101 |
|
|
verbatimElevation,/location/verbatimelevation,
|
| 102 |
|
|
associatedTaxa,,** No join mapping for associatedTaxa **
|
| 103 |
|
|
basisOfRecord,,** No join mapping for basisOfRecord **
|
| 104 |
7661
|
aaronmk
|
coordinatePrecision,,** No non-empty join mapping for UNUSED **
|
| 105 |
7555
|
aaronmk
|
day,,** No join mapping for day **
|
| 106 |
|
|
disposition,,** No join mapping for disposition **
|
| 107 |
|
|
endDayOfYear,,** No join mapping for endDayOfYear **
|
| 108 |
7722
|
aaronmk
|
fieldNotes,,** No non-empty join mapping for UNUSED **
|
| 109 |
7555
|
aaronmk
|
geodeticDatum,,** No join mapping for geodeticDatum **
|
| 110 |
|
|
georeferenceProtocol,,** No join mapping for georeferenceProtocol **
|
| 111 |
|
|
georeferenceRemarks,,** No join mapping for georeferenceRemarks **
|
| 112 |
|
|
georeferenceSources,,** No join mapping for georeferenceSources **
|
| 113 |
|
|
georeferenceVerificationStatus,,** No join mapping for georeferenceVerificationStatus **
|
| 114 |
|
|
georeferencedBy,,** No join mapping for georeferencedBy **
|
| 115 |
|
|
identificationReferences,,** No join mapping for identificationReferences **
|
| 116 |
|
|
identificationRemarks,,** No join mapping for identificationRemarks **
|
| 117 |
|
|
language,,** No join mapping for language **
|
| 118 |
|
|
lifeStage,,** No join mapping for lifeStage **
|
| 119 |
|
|
modified,,** No join mapping for modified **
|
| 120 |
|
|
month,,** No join mapping for month **
|
| 121 |
|
|
municipality,,** No join mapping for municipality **
|
| 122 |
|
|
otherCatalogNumbers,,** No join mapping for otherCatalogNumbers **
|
| 123 |
7646
|
aaronmk
|
ownerInstitutionCode,,** No join mapping for specimenOwner **
|
| 124 |
7555
|
aaronmk
|
preparations,,** No join mapping for preparations **
|
| 125 |
7663
|
aaronmk
|
rightsHolder,,** No join mapping for dataOwners **
|
| 126 |
7555
|
aaronmk
|
startDayOfYear,,** No join mapping for startDayOfYear **
|
| 127 |
|
|
typeStatus,,** No join mapping for typeStatus **
|
| 128 |
7809
|
aaronmk
|
verbatimCoordinateSystem,,** No join mapping for coordinateUnits **
|
| 129 |
7555
|
aaronmk
|
verbatimEventDate,,** No join mapping for verbatimEventDate **
|
| 130 |
|
|
year,,** No join mapping for year **
|
