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root/mappings/for_review/DwC-VegBIEN.specimens.csv @ 913

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"DwC::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list/",VegBIEN:/specimenreplicate,Comments,Order
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coordinatePrecision,//location/locationaccuracy,,89
3 
country,"//*_id/namedplace[placesystem=""area|country|territory""]/placename",Brad: Required; reject record if this field NULL,63
4 
stateProvince,"//*_id/namedplace[placesystem=""region|state|province""]/placename",,65
5 
county,//*_id/namedplace[placesystem=county]/placename,,66
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locality,//namedplace/placedescription/_alt/1,,68
7 
verbatimLocality,//namedplace/placedescription/_alt/2,"Brad: Correct for VB; Nick, is there no specific element for locality description in VegX? Definitely need one.",69
8 
decimalLatitude,//location/reallatitude/_alt/1,,85
9 
verbatimLatitude,//location/reallatitude/_alt/2,,81
10 
decimalLongitude,//location/reallongitude/_alt/1,,86
11 
verbatimLongitude,//location/reallongitude/_alt/2,,82
12 745 aaronmk 
maximumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/max,elevationrange/_range/to}",,72
13 
minimumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/min,elevationrange/_range/from}",,71
14 816 aaronmk 
eventDate,//locationevent/obsstartdate,,44
15 
eventDate/_alt/1/_*/date,//locationevent/obsstartdate/_alt/1/_*/date,,44
16 
eventDate/_alt/2/_date/day,//locationevent/obsstartdate/_alt/2/_date/day,,44
17 
eventDate/_alt/2/_date/month,//locationevent/obsstartdate/_alt/2/_date/month,,44
18 
eventDate/_alt/2/_date/year,//locationevent/obsstartdate/_alt/2/_date/year,,44
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maximumDepthInMeters,//waterdepth/max,,75
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minimumDepthInMeters,//waterdepth/min,,74
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habitat,"//stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=habitat]]/definedvalue","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",52
22 763 aaronmk 
bien.plantFungusDescription,"//stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=plantFungusDescription]]/definedvalue",,
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sex,"//taxonoccurrence/taxondetermination[rolecode=identifier]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=sex]]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",26
24 816 aaronmk 
dateIdentified,//taxonoccurrence/taxondetermination[rolecode=identifier]/determinationdate,,120
25 
dateIdentified/_alt/1/_*/date,//taxonoccurrence/taxondetermination[rolecode=identifier]/determinationdate/_alt/1/_*/date,,120
26 
dateIdentified/_alt/2/_date/day,//taxonoccurrence/taxondetermination[rolecode=identifier]/determinationdate/_alt/2/_date/day,,120
27 
dateIdentified/_alt/2/_date/month,//taxonoccurrence/taxondetermination[rolecode=identifier]/determinationdate/_alt/2/_date/month,,120
28 
dateIdentified/_alt/2/_date/year,//taxonoccurrence/taxondetermination[rolecode=identifier]/determinationdate/_alt/2/_date/year,,120
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identifiedBy,"//taxonoccurrence/taxondetermination[rolecode=identifier]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?,119
30 
scientificName,//taxonoccurrence/taxondetermination[rolecode=identifier]/*_id/plantconcept/*_id/*/plantname/_alt/1,"Brad: Bob, Nick, please is this mapping OK?",134
31 
scientificNameAuthorship,"//taxonoccurrence/taxondetermination[rolecode=identifier,plantlevel=Authority]/*_id/plantconcept/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
32 
class,"//taxonoccurrence/taxondetermination[rolecode=identifier,plantlevel=Class]/*_id/plantconcept/*_id/*/plantname",,144
33 
family,"//taxonoccurrence/taxondetermination[rolecode=identifier,plantlevel=Family]/*_id/plantconcept/*_id/*/plantname",,146
34 
genus,"//taxonoccurrence/taxondetermination[rolecode=identifier,plantlevel=Genus]/*_id/plantconcept/*_id/*/plantname",,147
35 
kingdom,"//taxonoccurrence/taxondetermination[rolecode=identifier,plantlevel=Kingdom]/*_id/plantconcept/*_id/*/plantname",,142
36 
order,"//taxonoccurrence/taxondetermination[rolecode=identifier,plantlevel=Order]/*_id/plantconcept/*_id/*/plantname",,145
37 
specificEpithet,"//taxonoccurrence/taxondetermination[rolecode=identifier,plantlevel=Species]/*_id/plantconcept/*_id/*/plantname",,149
38 
phylum,"//taxonoccurrence/taxondetermination[rolecode=identifier,plantlevel=Subkingdom]/*_id/plantconcept/*_id/*/plantname",,143
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fieldNotes,"/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=notes]]/definedvalue","Brad: mapping OK; NY appears to be using this field for almost anything, but mostly internal collections notes",54
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occurrenceID,"/{/sourceaccessioncode,*_id/taxonoccurrence/aggregateoccurrence/*_id/plantobservation/authorplantcode}","Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19
41 745 aaronmk 
fieldNumber,/catalognumber_dwc,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?",53
42 
individualID,/collectornumber_dwc,"Brad: OMIT; db-specific element, not relevant to VB/VX",24
43 
georeferencedBy,/verbatimcollectorname,Brad: Correct for VB. Nick: is there a way to specifically identify this party as collector of a specimen?,94
44 
institutionCode,/{museum_id/party/organizationname/_name/first},,11
45 
collectionCode,"/{museum_id/party/organizationname/_name/last,collectioncode_dwc}",Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12
46 
acceptedNameUsage,,,135
47 
acceptedNameUsageID,,,128
48 
associatedMedia,,,36
49 
associatedOccurrences,,,38
50 
associatedReferences,,,37
51 
associatedSequences,,,39
52 
associatedTaxa,,,40
53 
basisOfRecord,,Brad: OMIT? See http://rs.tdwg.org/dwc/terms/index.htm#basisOfRecord for definition of this term.,15
54 
bed,,,117
55 
behavior,,,29
56 
catalogNumber,,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",20
57 
collectionID,,,9
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continent,,Brad: OMIT,59
59 
coordinateUncertaintyInMeters,,,88
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countryCode,,,64
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dataGeneralizations,,,17
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datasetID,,,10
63 
datasetName,,,13
64 
day,,Brad: OMIT,50
65 
dcterms:accessRights,,,5
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dcterms:bibliographicCitation,,,6
67 745 aaronmk 
dcterms:language,,,2
68 
dcterms:modified,,"Brad: Mapping to VegX is incorrect. I think is this merely an internal timestamp indicated when record last modified, not necessarily when determination (taxon name) last modified. Probably we should omit this field, although might be useful for updating changed records from this source.",1
69 
dcterms:references,,,7
70 
dcterms:rights,,,3
71 
dcterms:rightsHolder,,,4
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dcterms:type,,,0
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disposition,,,33
74 
dynamicProperties,,,18
75 
earliestAgeOrLowestStage,,,109
76 
earliestEonOrLowestEonothem,,,101
77 
earliestEpochOrLowestSeries,,,107
78 
earliestEraOrLowestErathem,,,103
79 
earliestPeriodOrLowestSystem,,,105
80 
endDayOfYear,,,47
81 
establishmentMeans,,,30
82 741 aaronmk 
eventID,,,41
83 745 aaronmk 
eventRemarks,,,55
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eventTime,,Brad: OMIT,45
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footprintSRS,,,92
86 
footprintSpatialFit,,,93
87 
footprintWKT,,,91
88 
formation,,,115
89 
geodeticDatum,,,87
90 
geologicalContextID,,,100
91 
georeferenceProtocol,,,96
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georeferenceRemarks,,,99
93 
georeferenceSources,,,97
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georeferenceVerificationStatus,,,98
95 
georeferencedDate,,,95
96 
group,,,114
97 
higherClassification,,,141
98 
higherGeography,,,58
99 
higherGeographyID,,,57
100 
highestBiostratigraphicZone,,,112
101 
identificationID,,,118
102 
identificationQualifier,,,124
103 741 aaronmk 
identificationReferences,,,121
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identificationRemarks,,,123
105 
identificationVerificationStatus,,,122
106 
individualCount,,Brad: OMIT; not relevant for DwC plant specimen data.,25
107 
informationWithheld,,,16
108 
infraspecificEpithet,,,150
109 
institutionID,,,8
110 
island,,,62
111 
islandGroup,,,61
112 
latestAgeOrHighestStage,,,110
113 
latestEonOrHighestEonothem,,,102
114 
latestEpochOrHighestSeries,,,108
115 
latestEraOrHighestErathem,,,104
116 
latestPeriodOrHighestSystem,,,106
117 
lifeStage,,,27
118 
lithostratigraphicTerms,,,113
119 
locationAccordingTo,,,78
120 
locationID,,,56
121 
locationRemarks,,,79
122 
lowestBiostratigraphicZone,,,111
123 
maximumDistanceAboveSurfaceInMeters,,,77
124 
measurementAccuracy,,,169
125 
measurementDeterminedBy,,,172
126 
measurementDeterminedDate,,,171
127 
measurementID,,,166
128 
measurementMethod,,,173
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measurementRemarks,,,174
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measurementType,,,167
131 
measurementUnit,,,170
132 
measurementValue,,,168
133 
member,,,116
134 
minimumDistanceAboveSurfaceInMeters,,,76
135 
month,,,49
136 
municipality,,,67
137 
nameAccordingTo,,,138
138 
nameAccordingToID,,,131
139 
namePublishedIn,,,139
140 
namePublishedInID,,,132
141 
namePublishedInYear,,,140
142 
nomenclaturalCode,,,155
143 
nomenclaturalStatus,,,157
144 741 aaronmk 
occurrenceRemarks,,,21
145 745 aaronmk 
occurrenceStatus,,,31
146 
originalNameUsage,,,137
147 
originalNameUsageID,,,130
148 
otherCatalogNumbers,,,34
149 741 aaronmk 
ownerInstitutionCode,,,14
150 745 aaronmk 
parentNameUsage,,,136
151 
parentNameUsageID,,,129
152 
pointRadiusSpatialFit,,,90
153 
preparations,,Brad: OMIT,32
154 
previousIdentifications,,Brad: OMIT,35
155 
recordNumber,,,22
156 
recordedBy,,,23
157 
relatedResourceID,,Brad: OMIT,161
158 
relationshipAccordingTo,,,163
159 741 aaronmk 
relationshipEstablishedDate,,,164
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relationshipOfResource,,Brad: OMIT,162
161 741 aaronmk 
relationshipRemarks,,,165
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reproductiveCondition,,,28
163 
resourceID,,,160
164 
resourceRelationshipID,,,159
165 
samplingEffort,,,43
166 
samplingProtocol,,,42
167 
scientificNameID,,,127
168 741 aaronmk 
startDayOfYear,,,46
169 
subgenus,,,148
170 745 aaronmk 
taxonConceptID,,,133
171 741 aaronmk 
taxonID,,,126
172 745 aaronmk 
taxonRank,,,151
173 
taxonRemarks,,,158
174 
taxonomicStatus,,,156
175 
typeStatus,,Brad: OMIT (?). Indicates whether this specimen served as type for taxon name. Probably not relevant for BIEN,125
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verbatimCoordinateSystem,,,83
177 745 aaronmk 
verbatimCoordinates,,,80
178 741 aaronmk 
verbatimDepth,,,73
179 
verbatimElevation,,,70
180 
verbatimEventDate,,,51
181 745 aaronmk 
verbatimSRS,,,84
182 
verbatimTaxonRank,,,152
183 
vernacularName,,,154
184 
waterBody,,,60
185 
year,,,48