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8699
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aaronmk
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#!/bin/bash -e
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# links to locally-available resources
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8893
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aaronmk
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. "$(dirname "${BASH_SOURCE[0]}")"/util.sh
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| 4 |
9014
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aaronmk
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. "$(dirname "${BASH_SOURCE[0]}")"/db.sh
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8699
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aaronmk
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| 6 |
8705
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aaronmk
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if self_not_included; then
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| 8 |
9013
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aaronmk
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root_dir="$(dirname "${BASH_SOURCE[0]}")"/../..
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8699
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aaronmk
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bin_dir="$root_dir"/bin
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| 10 |
8924
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aaronmk
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bin_dir_abs="$(realpath "$bin_dir")"
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| 11 |
8705
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aaronmk
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8925
|
aaronmk
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export PATH="$bin_dir_abs:$PATH"
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| 13 |
8708
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aaronmk
|
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| 14 |
8939
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aaronmk
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#### make
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9074
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aaronmk
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root_make() { echo_func; make --directory="$root_dir" "$@"; }
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8939
|
aaronmk
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| 18 |
8890
|
aaronmk
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#### connection vars
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: "${remote_server=vegbiendev.nceas.ucsb.edu}"
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: "${local_server=localhost}"
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: "${local_user=bien}"
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: "${local_password="$(cat "$root_dir"/config/bien_password)"}"
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#### databases
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### MySQL
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| 29 |
8891
|
aaronmk
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: "${postgres_compat=1}"
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| 31 |
9153
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aaronmk
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mysql_export_local() { echo_func; use_local_remote; mysql_export "$@"; }
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9074
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aaronmk
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mysqldump_local() { echo_func; use_local_remote; mysqldump_diffable "$@"; }
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| 34 |
8892
|
aaronmk
|
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| 35 |
8890
|
aaronmk
|
### PostgreSQL
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| 36 |
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| 37 |
9074
|
aaronmk
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psql() # usage: [file=...] [dir=...] self
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| 38 |
8777
|
aaronmk
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{
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| 39 |
8881
|
aaronmk
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echo_func
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| 40 |
9050
|
aaronmk
|
if test "$file"; then
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| 41 |
8777
|
aaronmk
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set -- --file "$file" "$@"
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| 42 |
8834
|
aaronmk
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local dir="${dir:-$(dirname "$file")}"
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| 43 |
8777
|
aaronmk
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fi
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| 44 |
8834
|
aaronmk
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local dir="${dir:-$top_dir}"
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| 45 |
8777
|
aaronmk
|
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| 46 |
8790
|
aaronmk
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local psql_cmd="psql_$(if log_sql; then echo verbose; else echo script; fi)_vegbien"
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| 47 |
8777
|
aaronmk
|
(cat <<EOF
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\cd $dir
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\set schema "$schema"
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\set table "$table"
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\set table_str '''"$table"'''
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SET search_path TO "$schema", util;
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EOF
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| 54 |
9214
|
aaronmk
|
cat)|cmd_log_fd=1 \
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| 55 |
9213
|
aaronmk
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env no_search_path=1 "$psql_cmd" --output /dev/fd/11 "$@" 11>&1
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| 56 |
8777
|
aaronmk
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}
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| 58 |
9074
|
aaronmk
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public_schema_exists() { psql_script_vegbien </dev/null 2>/dev/null; }
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| 59 |
9046
|
aaronmk
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| 60 |
8705
|
aaronmk
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fi
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