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| Revision:
Name Size Revision Age Author Comment
  _archive 1598 over 12 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  analysis 3076 over 12 years Aaron Marcuse-Kubitza Added top-level analysis dir for range modeling
  backups 7564 almost 12 years Aaron Marcuse-Kubitza lib/common.Makefile: remote server: Use jupiter...
  bin 8943 over 11 years Aaron Marcuse-Kubitza bin/my2pg: support $sql_ascii mode, where varbi...
  config 7801 over 11 years Aaron Marcuse-Kubitza root Makefile: VegBIEN DB: mk_db: Added command...
  exports 8798 over 11 years Aaron Marcuse-Kubitza exports/: svn:ignore *.csv
  inputs 9391 over 11 years Aaron Marcuse-Kubitza inputs/GBIF/raw_occurrence_record/run: moved ta...
  lib 9398 over 11 years Aaron Marcuse-Kubitza bugfix: lib/runscripts/table.run: load_data(): ...
  mappings 8235 over 11 years Aaron Marcuse-Kubitza mappings/VegCore.htm: Renamed salvias_plots tab...
  planning 8457 over 11 years Aaron Marcuse-Kubitza Moved validation/ under planning/workflow/
  schemas 9074 over 11 years Aaron Marcuse-Kubitza *{.sh,run}: removed extra space between functio...
  web 9389 over 11 years Aaron Marcuse-Kubitza web/links/index.htm: updated to Firefox bookmar...
.htaccess 326 Bytes 8771 over 11 years Aaron Marcuse-Kubitza /.htaccess: use canonical URL without symlinks
Makefile 12.6 KB 8844 over 11 years Aaron Marcuse-Kubitza bugfix: /Makefile: moved schemas/install from i...
README.TXT 21.2 KB 9399 over 11 years Aaron Marcuse-Kubitza /README.TXT: Maintenance: added things to put i...
fix_perms 97 Bytes 7560 almost 12 years Aaron Marcuse-Kubitza Added root fix_perms
map 1001 Bytes 6949 almost 12 years Aaron Marcuse-Kubitza vegbien_dest: Changed default $prefix to "", so...
new_terms.csv 38.1 KB 7222 almost 12 years Aaron Marcuse-Kubitza new_terms.csv: Regenerated
run 450 Bytes 9074 over 11 years Aaron Marcuse-Kubitza *{.sh,run}: removed extra space between functio...
unmapped_terms.csv 13.1 KB 7201 almost 12 years Aaron Marcuse-Kubitza **/new_terms.csv, **/unmapped_terms.csv: Regene...

Latest revisions

# Date Author Comment
9399 05/16/2013 11:15 AM Aaron Marcuse-Kubitza

/README.TXT: Maintenance: added things to put in your .profile on a live machine (e.g. vegbiendev). in particular, you MUST NOT have a TMOUT (autologout) set, because this causes screen to exit even if background processes (e.g. from column-based import) are running

9398 05/16/2013 06:15 AM Aaron Marcuse-Kubitza

bugfix: lib/runscripts/table.run: load_data(): need to ensure the verbosity is at least 3 because the install logs require verbose output. (3 is the default for the installer, but is overridden by the runscripts, which instead set the default to 1.)

9397 05/16/2013 06:13 AM Aaron Marcuse-Kubitza

lib/sh/util.sh: logging: added verbosity_min()

9396 05/16/2013 06:00 AM Aaron Marcuse-Kubitza

lib/sh/util.sh: logging: added verbosity_int() and use it instead of `round_down "$verbosity"`

9395 05/16/2013 02:08 AM Aaron Marcuse-Kubitza

bugfix: lib/sh/util.sh: log+ alias: don't expand next word because it's not a cmd

9394 05/16/2013 01:59 AM Aaron Marcuse-Kubitza

lib/runscripts/table.run: $schema, $table: log the `cd` used to calculate the value at log_level 3 instead of 1 (note that the cd() function call for this will be logged at log_level 5)

9393 05/16/2013 01:51 AM Aaron Marcuse-Kubitza

lib/sh/util.sh: cd(): trace-log the cd() function call itself (at log_level 3) in addition to the cd builtin call

9392 05/15/2013 11:28 PM Aaron Marcuse-Kubitza

lib/runscripts/table.run: import(): added step to load the data into the staging table before postprocessing it

9391 05/15/2013 11:27 PM Aaron Marcuse-Kubitza

inputs/GBIF/raw_occurrence_record/run: moved table.tsv.md5/make() and invocation of it to inputs/GBIF/table.run because it's general to all tables (which would all use table.tsv for this datasource). use $target_filename in calling table.tsv.md5/make from table.tsv/make.

9390 05/15/2013 11:21 PM Aaron Marcuse-Kubitza

bugfix: lib/sql.py: parse_exception(): typed_name_re: need to ensure that full name is matched rather than just first character

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