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Name Size Revision Age Author Comment
  _archive 1598 almost 13 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  analysis 3076 over 12 years Aaron Marcuse-Kubitza Added top-level analysis dir for range modeling
  backups 7564 almost 12 years Aaron Marcuse-Kubitza lib/common.Makefile: remote server: Use jupiter...
  bin 9455 over 11 years Aaron Marcuse-Kubitza bin/map: by_col: ensure verbosity is at least 2...
  config 7801 almost 12 years Aaron Marcuse-Kubitza root Makefile: VegBIEN DB: mk_db: Added command...
  exports 8798 over 11 years Aaron Marcuse-Kubitza exports/: svn:ignore *.csv
  inputs 9471 over 11 years Aaron Marcuse-Kubitza bugfix: inputs/GBIF/raw_occurrence_record/run: ...
  lib 9478 over 11 years Aaron Marcuse-Kubitza lib/sh/local.sh: psql(): documented why can't u...
  mappings 9459 over 11 years Aaron Marcuse-Kubitza bugfix: mappings/VegCore-VegBIEN.csv: place.geo...
  planning 9403 over 11 years Aaron Marcuse-Kubitza added planning/workflow/validation/GeoDistKM.sq...
  schemas 9416 over 11 years Aaron Marcuse-Kubitza schemas/vegbien.sql: cultivated_family_location...
  web 9389 over 11 years Aaron Marcuse-Kubitza web/links/index.htm: updated to Firefox bookmar...
.htaccess 326 Bytes 8771 over 11 years Aaron Marcuse-Kubitza /.htaccess: use canonical URL without symlinks
Makefile 12.6 KB 8844 over 11 years Aaron Marcuse-Kubitza bugfix: /Makefile: moved schemas/install from i...
README.TXT 21.3 KB 9401 over 11 years Aaron Marcuse-Kubitza /README.TXT: Full database import: before runni...
fix_perms 97 Bytes 7560 almost 12 years Aaron Marcuse-Kubitza Added root fix_perms
map 1001 Bytes 6949 about 12 years Aaron Marcuse-Kubitza vegbien_dest: Changed default $prefix to "", so...
new_terms.csv 38.1 KB 7222 almost 12 years Aaron Marcuse-Kubitza new_terms.csv: Regenerated
run 450 Bytes 9074 over 11 years Aaron Marcuse-Kubitza *{.sh,run}: removed extra space between functio...
unmapped_terms.csv 13.1 KB 7201 almost 12 years Aaron Marcuse-Kubitza **/new_terms.csv, **/unmapped_terms.csv: Regene...

Latest revisions

# Date Author Comment
9478 05/21/2013 12:14 PM Aaron Marcuse-Kubitza

lib/sh/local.sh: psql(): documented why can't use fd 11

9477 05/21/2013 12:09 PM Aaron Marcuse-Kubitza

lib/sh/local.sh: use @redirs instead of manual redirection to set up --output fd, so that the redirection will be echoed along with the command. for some reason, this requires switching to fd 13 instead of 11, because fd 11 gives a "/dev/fd/11: Bad file descriptor" error when 11 is set with exec right before the command instead of on the subshell the command is executed in. (13 was chosen rather than 12 because 2 is for errors, while *3 (or 3) is for logging.)

9476 05/21/2013 04:18 AM Aaron Marcuse-Kubitza

bugfix: lib/sh/db.sh: pg_export_table_to_dir_no_header(): inlined $(pg_header) so setting $cols wouldn't affect pg_export_table_no_header(), which uses it as a kw param

9475 05/20/2013 10:44 PM Aaron Marcuse-Kubitza

bugfix: lib/sh/util.sh: to_file(): require_not_exists check: missing `test` in `if "$if_not_exists"`

9474 05/20/2013 10:39 PM Aaron Marcuse-Kubitza

lib/sh/util.sh: command(): log the function call using echo_func to assist debugging. (use a higher log_level because it's internal.)

9473 05/20/2013 09:29 PM Aaron Marcuse-Kubitza

lib/sh/util.sh: command(): support custom redirections, which will be echoed along with the command

9472 05/20/2013 08:48 PM Aaron Marcuse-Kubitza

lib/sh/util.sh: to_file(): reworded confusing || conditional for require_not_exists into an if statement

9471 05/20/2013 08:21 PM Aaron Marcuse-Kubitza

bugfix: inputs/GBIF/raw_occurrence_record/run: herbaria_filter.table/make(): need to use append=1 with mysql_import so the output table doesn't get re-truncated when additional parts are added

9470 05/20/2013 07:28 PM Aaron Marcuse-Kubitza

bugfix: lib/sh/db.sh: load new aliases before mk_select(), which uses mk_table_esc

9469 05/20/2013 07:27 PM Aaron Marcuse-Kubitza

lib/runscripts/table.run: include make.sh so runscripts based on it can use make-related utils

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