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root/mappings/for_review/DwC-VegBIEN.specimens.csv @ 948

1 763 aaronmk 
"DwC::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list/",VegBIEN:/specimenreplicate,Comments,Order
2 922 aaronmk 
footprintWKT,//location/dsgpoly,,91
3 745 aaronmk 
coordinatePrecision,//location/locationaccuracy,,89
4 
country,"//*_id/namedplace[placesystem=""area|country|territory""]/placename",Brad: Required; reject record if this field NULL,63
5 
stateProvince,"//*_id/namedplace[placesystem=""region|state|province""]/placename",,65
6 
county,//*_id/namedplace[placesystem=county]/placename,,66
7 913 aaronmk 
locality,//namedplace/placedescription/_alt/1,,68
8 
verbatimLocality,//namedplace/placedescription/_alt/2,"Brad: Correct for VB; Nick, is there no specific element for locality description in VegX? Definitely need one.",69
9 
decimalLatitude,//location/reallatitude/_alt/1,,85
10 
verbatimLatitude,//location/reallatitude/_alt/2,,81
11 
decimalLongitude,//location/reallongitude/_alt/1,,86
12 
verbatimLongitude,//location/reallongitude/_alt/2,,82
13 745 aaronmk 
maximumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/max,elevationrange/_range/to}",,72
14 
minimumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/min,elevationrange/_range/from}",,71
15 922 aaronmk 
bien.vegetation,//commconcept/commdescription,,
16 816 aaronmk 
eventDate,//locationevent/obsstartdate,,44
17 
eventDate/_alt/1/_*/date,//locationevent/obsstartdate/_alt/1/_*/date,,44
18 
eventDate/_alt/2/_date/day,//locationevent/obsstartdate/_alt/2/_date/day,,44
19 
eventDate/_alt/2/_date/month,//locationevent/obsstartdate/_alt/2/_date/month,,44
20 
eventDate/_alt/2/_date/year,//locationevent/obsstartdate/_alt/2/_date/year,,44
21 922 aaronmk 
bien.substrate,//soilobs/soildescription,,
22 745 aaronmk 
maximumDepthInMeters,//waterdepth/max,,75
23 741 aaronmk 
minimumDepthInMeters,//waterdepth/min,,74
24 745 aaronmk 
habitat,"//stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=habitat]]/definedvalue","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",52
25 
sex,"//taxonoccurrence/taxondetermination[rolecode=identifier]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=sex]]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",26
26 816 aaronmk 
dateIdentified,//taxonoccurrence/taxondetermination[rolecode=identifier]/determinationdate,,120
27 
dateIdentified/_alt/1/_*/date,//taxonoccurrence/taxondetermination[rolecode=identifier]/determinationdate/_alt/1/_*/date,,120
28 
dateIdentified/_alt/2/_date/day,//taxonoccurrence/taxondetermination[rolecode=identifier]/determinationdate/_alt/2/_date/day,,120
29 
dateIdentified/_alt/2/_date/month,//taxonoccurrence/taxondetermination[rolecode=identifier]/determinationdate/_alt/2/_date/month,,120
30 
dateIdentified/_alt/2/_date/year,//taxonoccurrence/taxondetermination[rolecode=identifier]/determinationdate/_alt/2/_date/year,,120
31 745 aaronmk 
identifiedBy,"//taxonoccurrence/taxondetermination[rolecode=identifier]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?,119
32 
scientificName,//taxonoccurrence/taxondetermination[rolecode=identifier]/*_id/plantconcept/*_id/*/plantname/_alt/1,"Brad: Bob, Nick, please is this mapping OK?",134
33 
scientificNameAuthorship,"//taxonoccurrence/taxondetermination[rolecode=identifier,plantlevel=Authority]/*_id/plantconcept/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
34 
class,"//taxonoccurrence/taxondetermination[rolecode=identifier,plantlevel=Class]/*_id/plantconcept/*_id/*/plantname",,144
35 
family,"//taxonoccurrence/taxondetermination[rolecode=identifier,plantlevel=Family]/*_id/plantconcept/*_id/*/plantname",,146
36 
genus,"//taxonoccurrence/taxondetermination[rolecode=identifier,plantlevel=Genus]/*_id/plantconcept/*_id/*/plantname",,147
37 
kingdom,"//taxonoccurrence/taxondetermination[rolecode=identifier,plantlevel=Kingdom]/*_id/plantconcept/*_id/*/plantname",,142
38 
order,"//taxonoccurrence/taxondetermination[rolecode=identifier,plantlevel=Order]/*_id/plantconcept/*_id/*/plantname",,145
39 
specificEpithet,"//taxonoccurrence/taxondetermination[rolecode=identifier,plantlevel=Species]/*_id/plantconcept/*_id/*/plantname",,149
40 
phylum,"//taxonoccurrence/taxondetermination[rolecode=identifier,plantlevel=Subkingdom]/*_id/plantconcept/*_id/*/plantname",,143
41 914 aaronmk 
infraspecificEpithet,"//taxonoccurrence/taxondetermination[rolecode=identifier,plantlevel=Subspecies]/*_id/plantconcept/*_id/*/plantname",,150
42 896 aaronmk 
fieldNotes,"/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=notes]]/definedvalue","Brad: mapping OK; NY appears to be using this field for almost anything, but mostly internal collections notes",54
43 746 aaronmk 
occurrenceID,"/{/sourceaccessioncode,*_id/taxonoccurrence/aggregateoccurrence/*_id/plantobservation/authorplantcode}","Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19
44 915 aaronmk 
catalogNumber,/catalognumber_dwc,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",20
45 
recordNumber,/collectionnumber/_alt/1,,22
46 
collectionID,/collectionnumber/_alt/2,,9
47 
fieldNumber,/collectionnumber/_alt/3,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?",53
48 922 aaronmk 
bien.specimenDescription,/description,,
49 
bien.specimenDescription/_merge/1,/description/_merge/1,,
50 
"bien.specimenDescription/_merge/2/_label[label=""plant fungus""]/value","/description/_merge/2/_label[label=""plant fungus""]/value",,
51 915 aaronmk 
recordedBy,/verbatimcollectorname,,23
52 745 aaronmk 
institutionCode,/{museum_id/party/organizationname/_name/first},,11
53 
collectionCode,"/{museum_id/party/organizationname/_name/last,collectioncode_dwc}",Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12
54 
acceptedNameUsage,,,135
55 
acceptedNameUsageID,,,128
56 
associatedMedia,,,36
57 
associatedOccurrences,,,38
58 
associatedReferences,,,37
59 
associatedSequences,,,39
60 
associatedTaxa,,,40
61 
basisOfRecord,,Brad: OMIT? See http://rs.tdwg.org/dwc/terms/index.htm#basisOfRecord for definition of this term.,15
62 
bed,,,117
63 
behavior,,,29
64 741 aaronmk 
continent,,Brad: OMIT,59
65 
coordinateUncertaintyInMeters,,,88
66 745 aaronmk 
countryCode,,,64
67 741 aaronmk 
dataGeneralizations,,,17
68 745 aaronmk 
datasetID,,,10
69 
datasetName,,,13
70 
day,,Brad: OMIT,50
71 
dcterms:accessRights,,,5
72 741 aaronmk 
dcterms:bibliographicCitation,,,6
73 745 aaronmk 
dcterms:language,,,2
74 
dcterms:modified,,"Brad: Mapping to VegX is incorrect. I think is this merely an internal timestamp indicated when record last modified, not necessarily when determination (taxon name) last modified. Probably we should omit this field, although might be useful for updating changed records from this source.",1
75 
dcterms:references,,,7
76 
dcterms:rights,,,3
77 
dcterms:rightsHolder,,,4
78 741 aaronmk 
dcterms:type,,,0
79 745 aaronmk 
disposition,,,33
80 
dynamicProperties,,,18
81 
earliestAgeOrLowestStage,,,109
82 
earliestEonOrLowestEonothem,,,101
83 
earliestEpochOrLowestSeries,,,107
84 
earliestEraOrLowestErathem,,,103
85 
earliestPeriodOrLowestSystem,,,105
86 
endDayOfYear,,,47
87 
establishmentMeans,,,30
88 741 aaronmk 
eventID,,,41
89 745 aaronmk 
eventRemarks,,,55
90 741 aaronmk 
eventTime,,Brad: OMIT,45
91 745 aaronmk 
footprintSRS,,,92
92 
footprintSpatialFit,,,93
93 
formation,,,115
94 
geodeticDatum,,,87
95 
geologicalContextID,,,100
96 
georeferenceProtocol,,,96
97 741 aaronmk 
georeferenceRemarks,,,99
98 
georeferenceSources,,,97
99 745 aaronmk 
georeferenceVerificationStatus,,,98
100 915 aaronmk 
georeferencedBy,,Brad: Correct for VB. Nick: is there a way to specifically identify this party as collector of a specimen?,94
101 745 aaronmk 
georeferencedDate,,,95
102 
group,,,114
103 
higherClassification,,,141
104 
higherGeography,,,58
105 
higherGeographyID,,,57
106 
highestBiostratigraphicZone,,,112
107 
identificationID,,,118
108 
identificationQualifier,,,124
109 741 aaronmk 
identificationReferences,,,121
110 745 aaronmk 
identificationRemarks,,,123
111 
identificationVerificationStatus,,,122
112 
individualCount,,Brad: OMIT; not relevant for DwC plant specimen data.,25
113 915 aaronmk 
individualID,,"Brad: OMIT; db-specific element, not relevant to VB/VX",24
114 745 aaronmk 
informationWithheld,,,16
115 
institutionID,,,8
116 
island,,,62
117 
islandGroup,,,61
118 
latestAgeOrHighestStage,,,110
119 
latestEonOrHighestEonothem,,,102
120 
latestEpochOrHighestSeries,,,108
121 
latestEraOrHighestErathem,,,104
122 
latestPeriodOrHighestSystem,,,106
123 
lifeStage,,,27
124 
lithostratigraphicTerms,,,113
125 
locationAccordingTo,,,78
126 
locationID,,,56
127 
locationRemarks,,,79
128 
lowestBiostratigraphicZone,,,111
129 
maximumDistanceAboveSurfaceInMeters,,,77
130 
measurementAccuracy,,,169
131 
measurementDeterminedBy,,,172
132 
measurementDeterminedDate,,,171
133 
measurementID,,,166
134 
measurementMethod,,,173
135 741 aaronmk 
measurementRemarks,,,174
136 745 aaronmk 
measurementType,,,167
137 
measurementUnit,,,170
138 
measurementValue,,,168
139 
member,,,116
140 
minimumDistanceAboveSurfaceInMeters,,,76
141 
month,,,49
142 
municipality,,,67
143 
nameAccordingTo,,,138
144 
nameAccordingToID,,,131
145 
namePublishedIn,,,139
146 
namePublishedInID,,,132
147 
namePublishedInYear,,,140
148 
nomenclaturalCode,,,155
149 
nomenclaturalStatus,,,157
150 741 aaronmk 
occurrenceRemarks,,,21
151 745 aaronmk 
occurrenceStatus,,,31
152 
originalNameUsage,,,137
153 
originalNameUsageID,,,130
154 
otherCatalogNumbers,,,34
155 741 aaronmk 
ownerInstitutionCode,,,14
156 745 aaronmk 
parentNameUsage,,,136
157 
parentNameUsageID,,,129
158 
pointRadiusSpatialFit,,,90
159 
preparations,,Brad: OMIT,32
160 
previousIdentifications,,Brad: OMIT,35
161 
relatedResourceID,,Brad: OMIT,161
162 
relationshipAccordingTo,,,163
163 741 aaronmk 
relationshipEstablishedDate,,,164
164 745 aaronmk 
relationshipOfResource,,Brad: OMIT,162
165 741 aaronmk 
relationshipRemarks,,,165
166 745 aaronmk 
reproductiveCondition,,,28
167 
resourceID,,,160
168 
resourceRelationshipID,,,159
169 
samplingEffort,,,43
170 
samplingProtocol,,,42
171 
scientificNameID,,,127
172 741 aaronmk 
startDayOfYear,,,46
173 
subgenus,,,148
174 745 aaronmk 
taxonConceptID,,,133
175 741 aaronmk 
taxonID,,,126
176 745 aaronmk 
taxonRank,,,151
177 
taxonRemarks,,,158
178 
taxonomicStatus,,,156
179 
typeStatus,,Brad: OMIT (?). Indicates whether this specimen served as type for taxon name. Probably not relevant for BIEN,125
180 741 aaronmk 
verbatimCoordinateSystem,,,83
181 745 aaronmk 
verbatimCoordinates,,,80
182 741 aaronmk 
verbatimDepth,,,73
183 
verbatimElevation,,,70
184 
verbatimEventDate,,,51
185 745 aaronmk 
verbatimSRS,,,84
186 
verbatimTaxonRank,,,152
187 
vernacularName,,,154
188 
waterBody,,,60
189 
year,,,48