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| Revision:
Name Size Revision Age Author Comment
  _archive 1598 over 12 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  analysis 3076 over 12 years Aaron Marcuse-Kubitza Added top-level analysis dir for range modeling
  backups 7564 almost 12 years Aaron Marcuse-Kubitza lib/common.Makefile: remote server: Use jupiter...
  bin 9455 over 11 years Aaron Marcuse-Kubitza bin/map: by_col: ensure verbosity is at least 2...
  config 7801 over 11 years Aaron Marcuse-Kubitza root Makefile: VegBIEN DB: mk_db: Added command...
  exports 8798 over 11 years Aaron Marcuse-Kubitza exports/: svn:ignore *.csv
  inputs 9485 over 11 years Aaron Marcuse-Kubitza inputs/GBIF/raw_occurrence_record/run: herbaria...
  lib 9482 over 11 years Aaron Marcuse-Kubitza lib/sh/db.sh: added mk_drop()
  mappings 9459 over 11 years Aaron Marcuse-Kubitza bugfix: mappings/VegCore-VegBIEN.csv: place.geo...
  planning 9403 over 11 years Aaron Marcuse-Kubitza added planning/workflow/validation/GeoDistKM.sq...
  schemas 9416 over 11 years Aaron Marcuse-Kubitza schemas/vegbien.sql: cultivated_family_location...
  web 9389 over 11 years Aaron Marcuse-Kubitza web/links/index.htm: updated to Firefox bookmar...
.htaccess 326 Bytes 8771 over 11 years Aaron Marcuse-Kubitza /.htaccess: use canonical URL without symlinks
Makefile 12.6 KB 8844 over 11 years Aaron Marcuse-Kubitza bugfix: /Makefile: moved schemas/install from i...
README.TXT 21.3 KB 9401 over 11 years Aaron Marcuse-Kubitza /README.TXT: Full database import: before runni...
fix_perms 97 Bytes 7560 almost 12 years Aaron Marcuse-Kubitza Added root fix_perms
map 1001 Bytes 6949 almost 12 years Aaron Marcuse-Kubitza vegbien_dest: Changed default $prefix to "", so...
new_terms.csv 38.1 KB 7222 almost 12 years Aaron Marcuse-Kubitza new_terms.csv: Regenerated
run 450 Bytes 9074 over 11 years Aaron Marcuse-Kubitza *{.sh,run}: removed extra space between functio...
unmapped_terms.csv 13.1 KB 7201 almost 12 years Aaron Marcuse-Kubitza **/new_terms.csv, **/unmapped_terms.csv: Regene...

Latest revisions

# Date Author Comment
9485 05/21/2013 01:44 PM Aaron Marcuse-Kubitza

inputs/GBIF/raw_occurrence_record/run: herbaria_filter.table/make(): also include the exported plant_fraction herbaria

9484 05/21/2013 01:43 PM Aaron Marcuse-Kubitza

inputs/GBIF/raw_occurrence_record/run: added herbaria_filter.plant_fraction.csv_/make(), which exports the plant_fraction herbaria whose plant_fraction >= 0.8

9483 05/21/2013 01:42 PM Aaron Marcuse-Kubitza

inputs/GBIF/raw_occurrence_record/run: added plant_fraction.table/make(), which contains the plant fraction for each herbarium

9482 05/21/2013 01:37 PM Aaron Marcuse-Kubitza

lib/sh/db.sh: added mk_drop()

9481 05/21/2013 01:00 PM Aaron Marcuse-Kubitza

lib/sh/util.sh: to_file(): log $stdout so users can tell which file is being created by the command. for some reason, can't use `local redirs=(">$stdout")` because the redirections don't seem to be applied. can't yet use `log+ -2 echo_vars stdout` because log+ does not yet support negative adjustments (they cause PS4 to be emptied out before being re-prepended to).

9480 05/21/2013 12:54 PM Aaron Marcuse-Kubitza

bugfix: lib/sh/util.sh: log+(): adjustment < 0: need to enclose -$1 in $(()) so it gets evaluated before being used as an array index

9479 05/21/2013 12:16 PM Aaron Marcuse-Kubitza

lib/sh/local.sh: psql(): documented that --output is actually for query results, not echoed statements (and thus must be redirected back to fd 1 while fd 1 with the statements gets sent to the logging port)

9478 05/21/2013 12:14 PM Aaron Marcuse-Kubitza

lib/sh/local.sh: psql(): documented why can't use fd 11

9477 05/21/2013 12:09 PM Aaron Marcuse-Kubitza

lib/sh/local.sh: use @redirs instead of manual redirection to set up --output fd, so that the redirection will be echoed along with the command. for some reason, this requires switching to fd 13 instead of 11, because fd 11 gives a "/dev/fd/11: Bad file descriptor" error when 11 is set with exec right before the command instead of on the subshell the command is executed in. (13 was chosen rather than 12 because 2 is for errors, while *3 (or 3) is for logging.)

9476 05/21/2013 04:18 AM Aaron Marcuse-Kubitza

bugfix: lib/sh/db.sh: pg_export_table_to_dir_no_header(): inlined $(pg_header) so setting $cols wouldn't affect pg_export_table_no_header(), which uses it as a kw param

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