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Revision 949

Added by Aaron Marcuse-Kubitza almost 13 years ago

VegX mappings: Gentry DBH mapping: Use VegX's attribute and method tables

View differences:

inputs/SALVIAS/maps/VegX.stems.csv
4 4 
"PlotObsID","/relatedItem[relationshipType=stemParent]/relatedItemID->/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/voucher",
5 5 
"NoInd","/simpleUserdefined[name=count]/value",
6 6 
"basal_diam","/diameterBaseDistance[baseDistance/value=0]/diameter",
7 
"stem_dbh","/diameterBaseDistance[baseDistance[!complexUserDefined/method]/value=1.37]/diameter",
8 
"gentry_dbh","/diameterBaseDistance[baseDistance[complexUserDefined/method=Gentry]/value=1.37]/diameter",
7 
"stem_dbh","/diameterBaseDistance[baseDistance[!attributeID]/value=1.37]/diameter",
8 
"gentry_dbh","/diameterBaseDistance[baseDistance[*ID/*s/attribute/quantitative/*ID/*s/method(/name=Gentry)]/value=1.37]/diameter",
9 9 
"stem_notes","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/note/text",
10 10 
"stem_tag1","/*ID->/*s/individualOrganism/identificationLabel/_alt/2",
11 11 
"stem_tag2","/*ID->/*s/individualOrganism/identificationLabel/_alt/1",
mappings/VegX-VegBIEN.organisms.csv
63 63 
/diameterBaseDistance[baseDistance/value=0]/diameter,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=basalDiameter]]:[@fkey=tableRecord_ID]/definedvalue"
64 64 
/simpleUserdefined[name=stemCanopyForm]/value,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyForm]]:[@fkey=tableRecord_ID]/definedvalue"
65 65 
/simpleUserdefined[name=stemCanopyPosition]/value,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyPosition]]:[@fkey=tableRecord_ID]/definedvalue"
66 
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/diameterBaseDistance[baseDistance[complexUserDefined/method=Gentry]/value=1.37]/diameter,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=gentryDiameter]]:[@fkey=tableRecord_ID]/definedvalue"
66 
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/diameterBaseDistance[baseDistance[*ID/*s/attribute/quantitative/*ID/*s/method(/name=Gentry)]/value=1.37]/diameter,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=gentryDiameter]]:[@fkey=tableRecord_ID]/definedvalue"
67 67 
/simpleUserdefined[name=htFirstBranchM]/value,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=heightFirstBranchM]]:[@fkey=tableRecord_ID]/definedvalue"
68 68 
/simpleUserdefined[name=stemHeightFirstBranchM]/value,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=heightFirstBranchM]]:[@fkey=tableRecord_ID]/definedvalue"
69 69 
/simpleUserdefined[name=stemLianaInfestation]/value,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=lianaInfestation]]:[@fkey=tableRecord_ID]/definedvalue"
......
72 72 
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/simpleUserdefined[name=stemCanopyPosition]/value,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=stemCanopyPosition]]:[@fkey=tableRecord_ID]/definedvalue"
73 73 
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/simpleUserdefined[name=stemHeightFirstBranchM]/value,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=stemHeightFirstBranchM]]:[@fkey=tableRecord_ID]/definedvalue"
74 74 
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/simpleUserdefined[name=stemLianaInfestation]/value,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=stemLianaInfestation]]:[@fkey=tableRecord_ID]/definedvalue"
75 
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/diameterBaseDistance[baseDistance[!complexUserDefined/method]/value=1.37]/diameter,/aggregateoccurrence/*_id/plantobservation/stemobservation/diameter
75 
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/diameterBaseDistance[baseDistance[!attributeID]/value=1.37]/diameter,/aggregateoccurrence/*_id/plantobservation/stemobservation/diameter
76 76 
/diameterBaseDistance[baseDistance/value=1.37]/diameter,/aggregateoccurrence/*_id/plantobservation/stemobservation/diameter
77 77 
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/simpleUserdefined[name=stemHeightM]/value,/aggregateoccurrence/*_id/plantobservation/stemobservation/height
78 78 
/simpleUserdefined[name=xPosition]/value,/aggregateoccurrence/*_id/plantobservation/stemobservation/xposition
mappings/for_review/VegX-VegBIEN.organisms.csv
63 63 
/diameterBaseDistance[value=0]/diameter,"//stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=basalDiameter]]/definedvalue"
64 64 
/simpleUserdefined[name=stemCanopyForm]/value,"//stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyForm]]/definedvalue"
65 65 
/simpleUserdefined[name=stemCanopyPosition]/value,"//stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyPosition]]/definedvalue"
66 
//*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/diameterBaseDistance[baseDistance[method=Gentry]/value=1.37]/diameter,"//stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=gentryDiameter]]/definedvalue"
66 
//*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/diameterBaseDistance[baseDistance[*ID/*s/attribute/quantitative/*ID/*s/method(/name=Gentry)]/value=1.37]/diameter,"//stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=gentryDiameter]]/definedvalue"
67 67 
/simpleUserdefined[name=htFirstBranchM]/value,"//stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=heightFirstBranchM]]/definedvalue"
68 68 
/simpleUserdefined[name=stemHeightFirstBranchM]/value,"//stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=heightFirstBranchM]]/definedvalue"
69 69 
/simpleUserdefined[name=stemLianaInfestation]/value,"//stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=lianaInfestation]]/definedvalue"
mappings/for_review/VegX-VegBIEN.stems.csv
5 5 
//individualOrganism/identificationLabel/_alt/1,/authorstemcode/_alt/1
6 6 
//individualOrganism/identificationLabel/_alt/2,/authorstemcode/_alt/2
7 7 
/diameterBaseDistance[value=0]/diameter,"/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=basalDiameter]]/definedvalue"
8 
/diameterBaseDistance[baseDistance[method=Gentry]/value=1.37]/diameter,"/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=gentryDiameter]]/definedvalue"
8 
/diameterBaseDistance[baseDistance[*ID/*s/attribute/quantitative/*ID/*s/method(/name=Gentry)]/value=1.37]/diameter,"/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=gentryDiameter]]/definedvalue"
9 9 
//note/text,"/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=notes]]/definedvalue"
10 10 
/simpleUserdefined[name=stemCanopyForm]/value,"/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=stemCanopyForm]]/definedvalue"
11 11 
/simpleUserdefined[name=stemCanopyPosition]/value,"/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=stemCanopyPosition]]/definedvalue"
mappings/VegX-VegBIEN.stems.csv
5 5 
/*ID->/*s/individualOrganism/identificationLabel/_alt/1,/authorstemcode/_alt/1
6 6 
/*ID->/*s/individualOrganism/identificationLabel/_alt/2,/authorstemcode/_alt/2
7 7 
/diameterBaseDistance[baseDistance/value=0]/diameter,"/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=basalDiameter]]:[@fkey=tableRecord_ID]/definedvalue"
8 
/diameterBaseDistance[baseDistance[complexUserDefined/method=Gentry]/value=1.37]/diameter,"/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=gentryDiameter]]:[@fkey=tableRecord_ID]/definedvalue"
8 
/diameterBaseDistance[baseDistance[*ID/*s/attribute/quantitative/*ID/*s/method(/name=Gentry)]/value=1.37]/diameter,"/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=gentryDiameter]]:[@fkey=tableRecord_ID]/definedvalue"
9 9 
/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/note/text,"/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=notes]]:[@fkey=tableRecord_ID]/definedvalue"
10 10 
/simpleUserdefined[name=stemCanopyForm]/value,"/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=stemCanopyForm]]:[@fkey=tableRecord_ID]/definedvalue"
11 11 
/simpleUserdefined[name=stemCanopyPosition]/value,"/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=stemCanopyPosition]]:[@fkey=tableRecord_ID]/definedvalue"
12 12 
/simpleUserdefined[name=stemHeightFirstBranchM]/value,"/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=stemHeightFirstBranchM]]:[@fkey=tableRecord_ID]/definedvalue"
13 13 
/simpleUserdefined[name=stemLianaInfestation]/value,"/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=stemLianaInfestation]]:[@fkey=tableRecord_ID]/definedvalue"
14 
/diameterBaseDistance[baseDistance[!complexUserDefined/method]/value=1.37]/diameter,/diameter
14 
/diameterBaseDistance[baseDistance[!attributeID]/value=1.37]/diameter,/diameter
15 15 
/simpleUserdefined[name=stemHeightM]/value,/height

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