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Name Size Revision Age Author Comment
  _archive 1598 almost 13 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  analysis 3076 over 12 years Aaron Marcuse-Kubitza Added top-level analysis dir for range modeling
  backups 9496 over 11 years Aaron Marcuse-Kubitza added backups/*.md5
  bin 9455 over 11 years Aaron Marcuse-Kubitza bin/map: by_col: ensure verbosity is at least 2...
  config 7801 almost 12 years Aaron Marcuse-Kubitza root Makefile: VegBIEN DB: mk_db: Added command...
  exports 8798 over 11 years Aaron Marcuse-Kubitza exports/: svn:ignore *.csv
  inputs 9501 over 11 years Aaron Marcuse-Kubitza inputs/*/*/postprocess.sql: Remove institutions...
  lib 9482 over 11 years Aaron Marcuse-Kubitza lib/sh/db.sh: added mk_drop()
  mappings 9459 over 11 years Aaron Marcuse-Kubitza bugfix: mappings/VegCore-VegBIEN.csv: place.geo...
  planning 9403 over 11 years Aaron Marcuse-Kubitza added planning/workflow/validation/GeoDistKM.sq...
  schemas 9493 over 11 years Aaron Marcuse-Kubitza inputs/.TNRS/schema.sql, data.sql: updated for ...
  web 9389 over 11 years Aaron Marcuse-Kubitza web/links/index.htm: updated to Firefox bookmar...
.htaccess 326 Bytes 8771 over 11 years Aaron Marcuse-Kubitza /.htaccess: use canonical URL without symlinks
Makefile 12.6 KB 8844 over 11 years Aaron Marcuse-Kubitza bugfix: /Makefile: moved schemas/install from i...
README.TXT 22.7 KB 9499 over 11 years Aaron Marcuse-Kubitza README.TXT: Full database import: added warning...
fix_perms 97 Bytes 7560 almost 12 years Aaron Marcuse-Kubitza Added root fix_perms
map 1001 Bytes 6949 about 12 years Aaron Marcuse-Kubitza vegbien_dest: Changed default $prefix to "", so...
new_terms.csv 38.1 KB 7222 almost 12 years Aaron Marcuse-Kubitza new_terms.csv: Regenerated
run 450 Bytes 9074 over 11 years Aaron Marcuse-Kubitza *{.sh,run}: removed extra space between functio...
unmapped_terms.csv 13.1 KB 7201 almost 12 years Aaron Marcuse-Kubitza **/new_terms.csv, **/unmapped_terms.csv: Regene...

Latest revisions

# Date Author Comment
9501 05/21/2013 11:10 PM Aaron Marcuse-Kubitza

inputs/*/*/postprocess.sql: Remove institutions that we have direct data for: query to obtain list: updated for current schema
9500 05/21/2013 10:49 PM Aaron Marcuse-Kubitza

inputs/import.stats.xls: Updated import times. GBIF has been refreshed (with the range modeling column subset), and column-based import now takes 3 days for 88.4 million rows.
9499 05/21/2013 10:27 PM Aaron Marcuse-Kubitza

README.TXT: Full database import: added warning to perform every single step listed, to avoid breaking column-based import
9498 05/21/2013 10:26 PM Aaron Marcuse-Kubitza

README.TXT: Full database import: Publish the new import: added warning to be sure you have done every single verification step before proceeding. otherwise, a previous valid import could incorrectly be overwritten with a broken one.
9497 05/21/2013 09:07 PM Aaron Marcuse-Kubitza

bugfix: README.TXT: Full database import: To run TNRS/remake analytical DB: need to run `export version=<version>` before the command which uses it rather than after
9496 05/21/2013 08:26 PM Aaron Marcuse-Kubitza

added backups/*.md5
9495 05/21/2013 08:22 PM Aaron Marcuse-Kubitza

added backups/TNRS.2013-5-21.backup.md5
9494 05/21/2013 07:42 PM Aaron Marcuse-Kubitza

README.TXT: Datasource setup: For MySQL inputs: For .sql exports: added steps to grant privileges to the bien user. the privileges list excludes UPDATE, DELETE, ALTER, DROP to prevent bugs in the import scripts from accidentally deleting data.
9493 05/21/2013 07:37 PM Aaron Marcuse-Kubitza

inputs/.TNRS/schema.sql, data.sql: updated for new TNRS CSV columns (see bug at https://pods.iplantcollaborative.org/jira/browse/TNRS-183). note that these columns may eventually change back (comment by Naim at https://pods.iplantcollaborative.org/jira/browse/TNRS-183#comment-34444).
9492 05/21/2013 07:33 PM Aaron Marcuse-Kubitza

README.TXT: Full database import: added steps to check that TNRS ran successfully, and fix errors (due to column changes in the TNRS CSV) if it didn't

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