Revision 952
Added by Aaron Marcuse-Kubitza almost 13 years ago
inputs/SALVIAS/maps/VegBIEN.organisms.csv | ||
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9 | 9 |
y_position,/aggregateoccurrence/*_id/plantobservation/stemobservation/yposition,Brad: See comment above for x_position |
10 | 10 |
NoInd,/aggregateoccurrence/count,"Brad: Incorrect for VegX. This is a count of number of indiiduals for an *aggregate* observation. For VegBank, I'm not sure. Not exactly the same as stemCount. An individual tree could have 3 stems but would still only count as 1. We need to check with Bob on this." |
11 | 11 |
cover_percent,/aggregateoccurrence/cover, |
12 |
canopy_form,"/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=canopyForm]]:[@fkey=tableRecord_ID]/definedvalue",Brad: Should also be userDefined for VegBank. |
|
13 |
canopy_position,"/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=canopyPosition]]:[@fkey=tableRecord_ID]/definedvalue",Brad: Should also be userDefined for VegBank. |
|
12 | 14 |
intercept_cm,"/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=interceptCm]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Incorrect for VegBank This is an aggregate observation. Used in line-intercept methodology only, describes the point along centerline at which an individual intercepts the center line of the plot. Used to determin relative abundance." |
15 |
liana_infestation,"/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=lianaInfestation]]:[@fkey=tableRecord_ID]/definedvalue",Brad: Should also be userDefined for VegBank. |
|
13 | 16 |
Notes,"/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=notes]]:[@fkey=tableRecord_ID]/definedvalue", |
14 | 17 |
census_no,"/definedvalue[*_id/userdefined[tablename=taxonoccurrence,userdefinedname=censusNo]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Assigned by SALVIAS. 1 for first plot, then 2, 3, etc. I can't recall if we even have repeat censuses in SALVIAS. Probably not." |
15 | 18 |
Habit,"/definedvalue[*_id/userdefined[tablename=taxonoccurrence,userdefinedname=habit]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Incorrect for VegBank, correct for VegX. This is growth form (tree, shrub, herb, etc.). It is an observation of a trait." |
... | ... | |
38 | 41 |
PlotCode,,"Brad: Same as plotCode, above" |
39 | 42 |
SourceVoucher,,"Brad: OMIT. This is the verbatim text, which includes both collectors name and collection number. I would use coll_number, below." |
40 | 43 |
SpAuthStatus,, |
41 |
canopy_form,,** No join mapping for /simpleUserdefined[name=canopyForm]/value ** Brad: Should also be userDefined for VegBank. |
|
42 |
canopy_position,,** No join mapping for /simpleUserdefined[name=canopyPosition]/value ** Brad: Should also be userDefined for VegBank. |
|
43 | 44 |
coll_inits,, |
44 | 45 |
collector_code,,Brad: OMIT |
45 | 46 |
common_name,, |
... | ... | |
51 | 52 |
height_m_commercial,, |
52 | 53 |
ind_id,,Brad: OMIT |
53 | 54 |
infra_auth_1,, |
54 |
liana_infestation,,** No join mapping for /simpleUserdefined[name=lianaInfestation]/value ** Brad: Should also be userDefined for VegBank. |
|
55 | 55 |
morphocf,, |
56 | 56 |
morphoname,, |
57 | 57 |
name_status,,"Brad: OMIT. Except, note that if species_status=3, this indicate that name is a morphospecies and not a standard latin name. Not exactly sure how to use this in BIEN, but could be useful during the name-scrubbing process with TNRS." |
mappings/VegX-VegBIEN.organisms.csv | ||
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79 | 79 |
/simpleUserdefined[name=yPosition]/value,/aggregateoccurrence/*_id/plantobservation/stemobservation/yposition |
80 | 80 |
/simpleUserdefined[name=count]/value,/aggregateoccurrence/count |
81 | 81 |
/simpleUserdefined[name=coverPercent]/value,/aggregateoccurrence/cover |
82 |
/simpleUserdefined[name=canopyForm]/value,"/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=canopyForm]]:[@fkey=tableRecord_ID]/definedvalue" |
|
83 |
/simpleUserdefined[name=canopyPosition]/value,"/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=canopyPosition]]:[@fkey=tableRecord_ID]/definedvalue" |
|
82 | 84 |
/simpleUserdefined[name=interceptCm]/value,"/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=interceptCm]]:[@fkey=tableRecord_ID]/definedvalue" |
85 |
/simpleUserdefined[name=lianaInfestation]/value,"/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=lianaInfestation]]:[@fkey=tableRecord_ID]/definedvalue" |
|
83 | 86 |
/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/note/text,"/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=notes]]:[@fkey=tableRecord_ID]/definedvalue" |
84 | 87 |
/simpleUserdefined[name=censusNo]/value,"/definedvalue[*_id/userdefined[tablename=taxonoccurrence,userdefinedname=censusNo]]:[@fkey=tableRecord_ID]/definedvalue" |
85 | 88 |
/simpleUserdefined[name=habit]/value,"/definedvalue[*_id/userdefined[tablename=taxonoccurrence,userdefinedname=habit]]:[@fkey=tableRecord_ID]/definedvalue" |
mappings/for_review/VegX-VegBIEN.organisms.csv | ||
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79 | 79 |
/simpleUserdefined[name=yPosition]/value,//stemobservation/yposition |
80 | 80 |
/simpleUserdefined[name=count]/value,//aggregateoccurrence/count |
81 | 81 |
/simpleUserdefined[name=coverPercent]/value,//aggregateoccurrence/cover |
82 |
/simpleUserdefined[name=canopyForm]/value,"//aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=canopyForm]]/definedvalue" |
|
83 |
/simpleUserdefined[name=canopyPosition]/value,"//aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=canopyPosition]]/definedvalue" |
|
82 | 84 |
/simpleUserdefined[name=interceptCm]/value,"//aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=interceptCm]]/definedvalue" |
85 |
/simpleUserdefined[name=lianaInfestation]/value,"//aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=lianaInfestation]]/definedvalue" |
|
83 | 86 |
//note/text,"//aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=notes]]/definedvalue" |
84 | 87 |
/simpleUserdefined[name=censusNo]/value,"/definedvalue[*_id/userdefined[tablename=taxonoccurrence,userdefinedname=censusNo]]/definedvalue" |
85 | 88 |
/simpleUserdefined[name=habit]/value,"/definedvalue[*_id/userdefined[tablename=taxonoccurrence,userdefinedname=habit]]/definedvalue" |
Also available in: Unified diff
mappings/VegX-VegBIEN.organisms.csv: Added mappings for SALVIAS fields with no join mapping. This fixes the last of the "no join mapping" errors.