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Revision 952

mappings/VegX-VegBIEN.organisms.csv: Added mappings for SALVIAS fields with no join mapping. This fixes the last of the "no join mapping" errors.

View differences:

inputs/SALVIAS/maps/VegBIEN.organisms.csv
9 9
y_position,/aggregateoccurrence/*_id/plantobservation/stemobservation/yposition,Brad: See comment above for x_position
10 10
NoInd,/aggregateoccurrence/count,"Brad: Incorrect for VegX. This is a count of number of indiiduals for an *aggregate* observation. For VegBank, I'm not sure. Not exactly the same as stemCount. An individual tree could have 3 stems but would still only count as 1. We need to check with Bob on this."
11 11
cover_percent,/aggregateoccurrence/cover,
12
canopy_form,"/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=canopyForm]]:[@fkey=tableRecord_ID]/definedvalue",Brad: Should also be userDefined for VegBank. 
13
canopy_position,"/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=canopyPosition]]:[@fkey=tableRecord_ID]/definedvalue",Brad: Should also be userDefined for VegBank. 
12 14
intercept_cm,"/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=interceptCm]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Incorrect for VegBank This is an aggregate observation. Used in line-intercept methodology only, describes the point along centerline at which an individual intercepts the center line of the plot. Used to determin relative abundance."
15
liana_infestation,"/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=lianaInfestation]]:[@fkey=tableRecord_ID]/definedvalue",Brad: Should also be userDefined for VegBank. 
13 16
Notes,"/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=notes]]:[@fkey=tableRecord_ID]/definedvalue",
14 17
census_no,"/definedvalue[*_id/userdefined[tablename=taxonoccurrence,userdefinedname=censusNo]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Assigned by SALVIAS. 1 for first plot, then 2, 3, etc. I can't recall if we even have repeat censuses in SALVIAS. Probably not."
15 18
Habit,"/definedvalue[*_id/userdefined[tablename=taxonoccurrence,userdefinedname=habit]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Incorrect for VegBank, correct for VegX. This is growth form (tree, shrub, herb, etc.). It is an observation of a trait."
......
38 41
PlotCode,,"Brad: Same as plotCode, above"
39 42
SourceVoucher,,"Brad: OMIT. This is the verbatim text, which includes both collectors name and collection number. I would use coll_number, below."
40 43
SpAuthStatus,,
41
canopy_form,,** No join mapping for /simpleUserdefined[name=canopyForm]/value ** Brad: Should also be userDefined for VegBank. 
42
canopy_position,,** No join mapping for /simpleUserdefined[name=canopyPosition]/value ** Brad: Should also be userDefined for VegBank. 
43 44
coll_inits,,
44 45
collector_code,,Brad: OMIT
45 46
common_name,,
......
51 52
height_m_commercial,,
52 53
ind_id,,Brad: OMIT
53 54
infra_auth_1,,
54
liana_infestation,,** No join mapping for /simpleUserdefined[name=lianaInfestation]/value ** Brad: Should also be userDefined for VegBank. 
55 55
morphocf,,
56 56
morphoname,,
57 57
name_status,,"Brad: OMIT. Except, note that if species_status=3, this indicate that name is a morphospecies and not a standard latin name. Not exactly sure how to use this in BIEN, but could be useful during the name-scrubbing process with TNRS."
mappings/VegX-VegBIEN.organisms.csv
79 79
/simpleUserdefined[name=yPosition]/value,/aggregateoccurrence/*_id/plantobservation/stemobservation/yposition
80 80
/simpleUserdefined[name=count]/value,/aggregateoccurrence/count
81 81
/simpleUserdefined[name=coverPercent]/value,/aggregateoccurrence/cover
82
/simpleUserdefined[name=canopyForm]/value,"/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=canopyForm]]:[@fkey=tableRecord_ID]/definedvalue"
83
/simpleUserdefined[name=canopyPosition]/value,"/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=canopyPosition]]:[@fkey=tableRecord_ID]/definedvalue"
82 84
/simpleUserdefined[name=interceptCm]/value,"/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=interceptCm]]:[@fkey=tableRecord_ID]/definedvalue"
85
/simpleUserdefined[name=lianaInfestation]/value,"/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=lianaInfestation]]:[@fkey=tableRecord_ID]/definedvalue"
83 86
/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/note/text,"/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=notes]]:[@fkey=tableRecord_ID]/definedvalue"
84 87
/simpleUserdefined[name=censusNo]/value,"/definedvalue[*_id/userdefined[tablename=taxonoccurrence,userdefinedname=censusNo]]:[@fkey=tableRecord_ID]/definedvalue"
85 88
/simpleUserdefined[name=habit]/value,"/definedvalue[*_id/userdefined[tablename=taxonoccurrence,userdefinedname=habit]]:[@fkey=tableRecord_ID]/definedvalue"
mappings/for_review/VegX-VegBIEN.organisms.csv
79 79
/simpleUserdefined[name=yPosition]/value,//stemobservation/yposition
80 80
/simpleUserdefined[name=count]/value,//aggregateoccurrence/count
81 81
/simpleUserdefined[name=coverPercent]/value,//aggregateoccurrence/cover
82
/simpleUserdefined[name=canopyForm]/value,"//aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=canopyForm]]/definedvalue"
83
/simpleUserdefined[name=canopyPosition]/value,"//aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=canopyPosition]]/definedvalue"
82 84
/simpleUserdefined[name=interceptCm]/value,"//aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=interceptCm]]/definedvalue"
85
/simpleUserdefined[name=lianaInfestation]/value,"//aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=lianaInfestation]]/definedvalue"
83 86
//note/text,"//aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=notes]]/definedvalue"
84 87
/simpleUserdefined[name=censusNo]/value,"/definedvalue[*_id/userdefined[tablename=taxonoccurrence,userdefinedname=censusNo]]/definedvalue"
85 88
/simpleUserdefined[name=habit]/value,"/definedvalue[*_id/userdefined[tablename=taxonoccurrence,userdefinedname=habit]]/definedvalue"

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