Project

General

Profile

1
"DwC::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list/",VegBIEN:/specimenreplicate,Comments,Order
2
footprintWKT,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/dsgpoly,,91
3
coordinatePrecision,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationaccuracy,,89
4
country,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination(/*_id/namedplace[placesystem=""area|country|territory""])/placename",Brad: Required; reject record if this field NULL,63
5
stateProvince,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination(/*_id/namedplace[placesystem=""region|state|province""])/placename",,65
6
county,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination(/*_id/namedplace[placesystem=county])/placename,,66
7
locality,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/*_id/namedplace/placedescription/_alt/1,,68
8
verbatimLocality,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/*_id/namedplace/placedescription/_alt/2,"Brad: Correct for VB; Nick, is there no specific element for locality description in VegX? Definitely need one.",69
9
decimalLatitude,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/reallatitude/_alt/1,,85
10
verbatimLatitude,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/reallatitude/_alt/2,,81
11
decimalLongitude,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/reallongitude/_alt/1,,86
12
verbatimLongitude,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/reallongitude/_alt/2,,82
13
maximumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/max,elevationrange/_range/to}",,72
14
minimumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/min,elevationrange/_range/from}",,71
15
bien.vegetation,/*_id/taxonoccurrence/*_id/locationevent/commclass/commdetermination/*_id/commconcept/commdescription,,
16
eventDate,/*_id/taxonoccurrence/*_id/locationevent/obsstartdate,,44
17
eventDate/_alt/1/_*/date,/*_id/taxonoccurrence/*_id/locationevent/obsstartdate/_alt/1/_*/date,,44
18
eventDate/_alt/2/_date/day,/*_id/taxonoccurrence/*_id/locationevent/obsstartdate/_alt/2/_date/day,,44
19
eventDate/_alt/2/_date/month,/*_id/taxonoccurrence/*_id/locationevent/obsstartdate/_alt/2/_date/month,,44
20
eventDate/_alt/2/_date/year,/*_id/taxonoccurrence/*_id/locationevent/obsstartdate/_alt/2/_date/year,,44
21
bien.substrate,/*_id/taxonoccurrence/*_id/locationevent/soilobs:[soilhorizon=unknown]/soildescription,,
22
maximumDepthInMeters,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/max,,75
23
minimumDepthInMeters,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/min,,74
24
habitat,"/*_id/taxonoccurrence/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=habitat]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",52
25
sex,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=sex]]:[@fkey=tableRecord_ID]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",26
26
dateIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/determinationdate",,120
27
dateIdentified/_alt/1/_*/date,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/determinationdate/_alt/1/_*/date",,120
28
dateIdentified/_alt/2/_date/day,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/determinationdate/_alt/2/_date/day",,120
29
dateIdentified/_alt/2/_date/month,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/determinationdate/_alt/2/_date/month",,120
30
dateIdentified/_alt/2/_date/year,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/determinationdate/_alt/2/_date/year",,120
31
identifiedBy,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]:[determinationtype=Author,iscurrent=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?,119
32
scientificName,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname/_alt/1","Brad: Bob, Nick, please is this mapping OK?",134
33
scientificNameAuthorship,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Authority]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
34
class,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Class]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,144
35
family,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Family]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,146
36
genus,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Genus]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,147
37
kingdom,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Kingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,142
38
order,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Order]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,145
39
specificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Species]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,149
40
phylum,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Subkingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,143
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infraspecificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Subspecies]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,150
42
fieldNotes,"/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=notes]]:[@fkey=tableRecord_ID]/definedvalue","Brad: mapping OK; NY appears to be using this field for almost anything, but mostly internal collections notes",54
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occurrenceID,"/{:[*_id/reference]/sourceaccessioncode,*_id/taxonoccurrence/aggregateoccurrence/*_id/plantobservation/authorplantcode}","Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19
44
catalogNumber,:[*_id/reference]/catalognumber_dwc,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",20
45
recordNumber,:[*_id/reference]/collectionnumber/_alt/1,,22
46
collectionID,:[*_id/reference]/collectionnumber/_alt/2,,9
47
fieldNumber,:[*_id/reference]/collectionnumber/_alt/3,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?",53
48
bien.specimenDescription,:[*_id/reference]/description,,
49
bien.specimenDescription/_merge/1,:[*_id/reference]/description/_merge/1,,
50
"bien.specimenDescription/_merge/2/_label[label=""plant fungus""]/value",":[*_id/reference]/description/_merge/2/_label[label=""plant fungus""]/value",,
51
recordedBy,:[*_id/reference]/verbatimcollectorname,,23
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institutionCode,:[*_id/reference]/{museum_id/party/organizationname/_name/first},,11
53
collectionCode,":[*_id/reference]/{museum_id/party/organizationname/_name/last,collectioncode_dwc}",Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12
54
acceptedNameUsage,,,135
55
acceptedNameUsageID,,,128
56
associatedMedia,,,36
57
associatedOccurrences,,,38
58
associatedReferences,,,37
59
associatedSequences,,,39
60
associatedTaxa,,,40
61
basisOfRecord,,Brad: OMIT? See http://rs.tdwg.org/dwc/terms/index.htm#basisOfRecord for definition of this term.,15
62
bed,,,117
63
behavior,,,29
64
continent,,Brad: OMIT,59
65
coordinateUncertaintyInMeters,,,88
66
countryCode,,,64
67
dataGeneralizations,,,17
68
datasetID,,,10
69
datasetName,,,13
70
day,,Brad: OMIT,50
71
dcterms:accessRights,,,5
72
dcterms:bibliographicCitation,,,6
73
dcterms:language,,,2
74
dcterms:modified,,"Brad: Mapping to VegX is incorrect. I think is this merely an internal timestamp indicated when record last modified, not necessarily when determination (taxon name) last modified. Probably we should omit this field, although might be useful for updating changed records from this source.",1
75
dcterms:references,,,7
76
dcterms:rights,,,3
77
dcterms:rightsHolder,,,4
78
dcterms:type,,,0
79
disposition,,,33
80
dynamicProperties,,,18
81
earliestAgeOrLowestStage,,,109
82
earliestEonOrLowestEonothem,,,101
83
earliestEpochOrLowestSeries,,,107
84
earliestEraOrLowestErathem,,,103
85
earliestPeriodOrLowestSystem,,,105
86
endDayOfYear,,,47
87
establishmentMeans,,,30
88
eventID,,,41
89
eventRemarks,,,55
90
eventTime,,Brad: OMIT,45
91
footprintSRS,,,92
92
footprintSpatialFit,,,93
93
formation,,,115
94
geodeticDatum,,,87
95
geologicalContextID,,,100
96
georeferenceProtocol,,,96
97
georeferenceRemarks,,,99
98
georeferenceSources,,,97
99
georeferenceVerificationStatus,,,98
100
georeferencedBy,,Brad: Correct for VB. Nick: is there a way to specifically identify this party as collector of a specimen?,94
101
georeferencedDate,,,95
102
group,,,114
103
higherClassification,,,141
104
higherGeography,,,58
105
higherGeographyID,,,57
106
highestBiostratigraphicZone,,,112
107
identificationID,,,118
108
identificationQualifier,,,124
109
identificationReferences,,,121
110
identificationRemarks,,,123
111
identificationVerificationStatus,,,122
112
individualCount,,Brad: OMIT; not relevant for DwC plant specimen data.,25
113
individualID,,"Brad: OMIT; db-specific element, not relevant to VB/VX",24
114
informationWithheld,,,16
115
institutionID,,,8
116
island,,,62
117
islandGroup,,,61
118
latestAgeOrHighestStage,,,110
119
latestEonOrHighestEonothem,,,102
120
latestEpochOrHighestSeries,,,108
121
latestEraOrHighestErathem,,,104
122
latestPeriodOrHighestSystem,,,106
123
lifeStage,,,27
124
lithostratigraphicTerms,,,113
125
locationAccordingTo,,,78
126
locationID,,,56
127
locationRemarks,,,79
128
lowestBiostratigraphicZone,,,111
129
maximumDistanceAboveSurfaceInMeters,,,77
130
measurementAccuracy,,,169
131
measurementDeterminedBy,,,172
132
measurementDeterminedDate,,,171
133
measurementID,,,166
134
measurementMethod,,,173
135
measurementRemarks,,,174
136
measurementType,,,167
137
measurementUnit,,,170
138
measurementValue,,,168
139
member,,,116
140
minimumDistanceAboveSurfaceInMeters,,,76
141
month,,,49
142
municipality,,,67
143
nameAccordingTo,,,138
144
nameAccordingToID,,,131
145
namePublishedIn,,,139
146
namePublishedInID,,,132
147
namePublishedInYear,,,140
148
nomenclaturalCode,,,155
149
nomenclaturalStatus,,,157
150
occurrenceRemarks,,,21
151
occurrenceStatus,,,31
152
originalNameUsage,,,137
153
originalNameUsageID,,,130
154
otherCatalogNumbers,,,34
155
ownerInstitutionCode,,,14
156
parentNameUsage,,,136
157
parentNameUsageID,,,129
158
pointRadiusSpatialFit,,,90
159
preparations,,Brad: OMIT,32
160
previousIdentifications,,Brad: OMIT,35
161
relatedResourceID,,Brad: OMIT,161
162
relationshipAccordingTo,,,163
163
relationshipEstablishedDate,,,164
164
relationshipOfResource,,Brad: OMIT,162
165
relationshipRemarks,,,165
166
reproductiveCondition,,,28
167
resourceID,,,160
168
resourceRelationshipID,,,159
169
samplingEffort,,,43
170
samplingProtocol,,,42
171
scientificNameID,,,127
172
startDayOfYear,,,46
173
subgenus,,,148
174
taxonConceptID,,,133
175
taxonID,,,126
176
taxonRank,,,151
177
taxonRemarks,,,158
178
taxonomicStatus,,,156
179
typeStatus,,Brad: OMIT (?). Indicates whether this specimen served as type for taxon name. Probably not relevant for BIEN,125
180
verbatimCoordinateSystem,,,83
181
verbatimCoordinates,,,80
182
verbatimDepth,,,73
183
verbatimElevation,,,70
184
verbatimEventDate,,,51
185
verbatimSRS,,,84
186
verbatimTaxonRank,,,152
187
vernacularName,,,154
188
waterBody,,,60
189
year,,,48
(3-3/8)