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8699
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aaronmk
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#!/bin/bash -e
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# links to locally-available resources
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8893
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aaronmk
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. "$(dirname "${BASH_SOURCE[0]}")"/util.sh
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9014
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aaronmk
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. "$(dirname "${BASH_SOURCE[0]}")"/db.sh
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8699
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aaronmk
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8705
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aaronmk
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if self_not_included; then
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9331
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aaronmk
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root_dir="$(canon_rel_path "$(dirname "${BASH_SOURCE[0]}")"/../..)" || return
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8699
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aaronmk
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bin_dir="$root_dir"/bin
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9331
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aaronmk
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bin_dir_abs="$(realpath "$bin_dir")" || return
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8705
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aaronmk
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8925
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aaronmk
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export PATH="$bin_dir_abs:$PATH"
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8708
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aaronmk
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| 14 |
8939
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aaronmk
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#### make
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9074
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aaronmk
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root_make() { echo_func; make --directory="$root_dir" "$@"; }
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8939
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aaronmk
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8890
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aaronmk
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#### connection vars
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9630
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aaronmk
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: "${remote_ssh_server=vegbiendev.nceas.ucsb.edu}"
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: "${remote_server=}"
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8890
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aaronmk
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: "${local_server=localhost}"
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: "${local_user=bien}"
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: "${local_password="$(cat "$root_dir"/config/bien_password)"}"
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9575
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aaronmk
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: "${root_user=root}"
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: "${root_password=$local_password}"
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| 27 |
8890
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aaronmk
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#### databases
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### MySQL
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8891
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aaronmk
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: "${postgres_compat=1}"
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9577
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aaronmk
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mysql_local() { echo_func; use_local_remote; mysql "$@"; }
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9153
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aaronmk
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mysql_export_local() { echo_func; use_local_remote; mysql_export "$@"; }
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9074
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aaronmk
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mysqldump_local() { echo_func; use_local_remote; mysqldump_diffable "$@"; }
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| 39 |
8892
|
aaronmk
|
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| 40 |
9576
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aaronmk
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mysql_root() { echo_func; use_local_remote; use_root; mysql "$@"; }
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8890
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aaronmk
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### PostgreSQL
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| 44 |
9074
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aaronmk
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psql() # usage: [file=...] [dir=...] self
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| 45 |
8777
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aaronmk
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{
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| 46 |
9235
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aaronmk
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echo_func; kw_params file dir
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| 47 |
9050
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aaronmk
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if test "$file"; then
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| 48 |
8777
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aaronmk
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set -- --file "$file" "$@"
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| 49 |
8834
|
aaronmk
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local dir="${dir:-$(dirname "$file")}"
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| 50 |
8777
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aaronmk
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fi
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| 51 |
8834
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aaronmk
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local dir="${dir:-$top_dir}"
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| 52 |
9427
|
aaronmk
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mk_schema_esc
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mk_table_esc
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| 54 |
8777
|
aaronmk
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| 55 |
9421
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aaronmk
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local psql_cmd="psql_$(if can_log; then echo verbose; else echo script; fi)_vegbien"
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| 56 |
9478
|
aaronmk
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local redirs=("${redirs[@]}" '13>&1') # not 11 because it gives a
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# "/dev/fd/11: Bad file descriptor" error when 11 is set with exec
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# right before the command instead of on the subshell it's executed in
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| 59 |
8777
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aaronmk
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(cat <<EOF
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\cd $dir
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9427
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aaronmk
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\set schema $schema_esc
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\set table $table_esc
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\set table_str '''$table_esc'''
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SET search_path TO $schema_esc, util;
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| 65 |
8777
|
aaronmk
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EOF
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| 66 |
9214
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aaronmk
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cat)|cmd_log_fd=1 \
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| 67 |
9477
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aaronmk
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env no_search_path=1 "$psql_cmd" --output /dev/fd/13 "$@"
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| 68 |
9479
|
aaronmk
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# --output is for query *results*, not echoed statements
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| 69 |
8777
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aaronmk
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}
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| 71 |
9074
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aaronmk
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public_schema_exists() { psql_script_vegbien </dev/null 2>/dev/null; }
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| 72 |
9046
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aaronmk
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| 73 |
8705
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aaronmk
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fi
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