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root/mappings/for_review/DwC-VegBIEN.specimens.csv @ 969

1 763 aaronmk 
"DwC::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list/",VegBIEN:/specimenreplicate,Comments,Order
2 922 aaronmk 
footprintWKT,//location/dsgpoly,,91
3 745 aaronmk 
coordinatePrecision,//location/locationaccuracy,,89
4 969 aaronmk 
coordinatePrecision/_noCV/value,//location/locationaccuracy/_noCV/value,,89
5 745 aaronmk 
country,"//*_id/namedplace[placesystem=""area|country|territory""]/placename",Brad: Required; reject record if this field NULL,63
6 
stateProvince,"//*_id/namedplace[placesystem=""region|state|province""]/placename",,65
7 
county,//*_id/namedplace[placesystem=county]/placename,,66
8 967 aaronmk 
locality,//location/locationnarrative/_alt/1,,68
9 
verbatimLocality,//location/locationnarrative/_alt/2,"Brad: Correct for VB; Nick, is there no specific element for locality description in VegX? Definitely need one.",69
10 913 aaronmk 
decimalLatitude,//location/reallatitude/_alt/1,,85
11 
verbatimLatitude,//location/reallatitude/_alt/2,,81
12 
decimalLongitude,//location/reallongitude/_alt/1,,86
13 
verbatimLongitude,//location/reallongitude/_alt/2,,82
14 745 aaronmk 
maximumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/max,elevationrange/_range/to}",,72
15 
minimumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/min,elevationrange/_range/from}",,71
16 922 aaronmk 
bien.vegetation,//commconcept/commdescription,,
17 816 aaronmk 
eventDate,//locationevent/obsstartdate,,44
18 
eventDate/_alt/1/_*/date,//locationevent/obsstartdate/_alt/1/_*/date,,44
19 
eventDate/_alt/2/_date/day,//locationevent/obsstartdate/_alt/2/_date/day,,44
20 
eventDate/_alt/2/_date/month,//locationevent/obsstartdate/_alt/2/_date/month,,44
21 
eventDate/_alt/2/_date/year,//locationevent/obsstartdate/_alt/2/_date/year,,44
22 922 aaronmk 
bien.substrate,//soilobs/soildescription,,
23 745 aaronmk 
maximumDepthInMeters,//waterdepth/max,,75
24 741 aaronmk 
minimumDepthInMeters,//waterdepth/min,,74
25 745 aaronmk 
habitat,"//stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=habitat]]/definedvalue","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",52
26 
sex,"//taxonoccurrence/taxondetermination[rolecode=identifier]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=sex]]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",26
27 816 aaronmk 
dateIdentified,//taxonoccurrence/taxondetermination[rolecode=identifier]/determinationdate,,120
28 
dateIdentified/_alt/1/_*/date,//taxonoccurrence/taxondetermination[rolecode=identifier]/determinationdate/_alt/1/_*/date,,120
29 
dateIdentified/_alt/2/_date/day,//taxonoccurrence/taxondetermination[rolecode=identifier]/determinationdate/_alt/2/_date/day,,120
30 
dateIdentified/_alt/2/_date/month,//taxonoccurrence/taxondetermination[rolecode=identifier]/determinationdate/_alt/2/_date/month,,120
31 
dateIdentified/_alt/2/_date/year,//taxonoccurrence/taxondetermination[rolecode=identifier]/determinationdate/_alt/2/_date/year,,120
32 745 aaronmk 
identifiedBy,"//taxonoccurrence/taxondetermination[rolecode=identifier]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?,119
33 
scientificName,//taxonoccurrence/taxondetermination[rolecode=identifier]/*_id/plantconcept/*_id/*/plantname/_alt/1,"Brad: Bob, Nick, please is this mapping OK?",134
34 
scientificNameAuthorship,"//taxonoccurrence/taxondetermination[rolecode=identifier,plantlevel=Authority]/*_id/plantconcept/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
35 
class,"//taxonoccurrence/taxondetermination[rolecode=identifier,plantlevel=Class]/*_id/plantconcept/*_id/*/plantname",,144
36 
family,"//taxonoccurrence/taxondetermination[rolecode=identifier,plantlevel=Family]/*_id/plantconcept/*_id/*/plantname",,146
37 
genus,"//taxonoccurrence/taxondetermination[rolecode=identifier,plantlevel=Genus]/*_id/plantconcept/*_id/*/plantname",,147
38 
kingdom,"//taxonoccurrence/taxondetermination[rolecode=identifier,plantlevel=Kingdom]/*_id/plantconcept/*_id/*/plantname",,142
39 
order,"//taxonoccurrence/taxondetermination[rolecode=identifier,plantlevel=Order]/*_id/plantconcept/*_id/*/plantname",,145
40 
specificEpithet,"//taxonoccurrence/taxondetermination[rolecode=identifier,plantlevel=Species]/*_id/plantconcept/*_id/*/plantname",,149
41 
phylum,"//taxonoccurrence/taxondetermination[rolecode=identifier,plantlevel=Subkingdom]/*_id/plantconcept/*_id/*/plantname",,143
42 914 aaronmk 
infraspecificEpithet,"//taxonoccurrence/taxondetermination[rolecode=identifier,plantlevel=Subspecies]/*_id/plantconcept/*_id/*/plantname",,150
43 896 aaronmk 
fieldNotes,"/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=notes]]/definedvalue","Brad: mapping OK; NY appears to be using this field for almost anything, but mostly internal collections notes",54
44 746 aaronmk 
occurrenceID,"/{/sourceaccessioncode,*_id/taxonoccurrence/aggregateoccurrence/*_id/plantobservation/authorplantcode}","Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19
45 915 aaronmk 
catalogNumber,/catalognumber_dwc,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",20
46 
recordNumber,/collectionnumber/_alt/1,,22
47 
collectionID,/collectionnumber/_alt/2,,9
48 
fieldNumber,/collectionnumber/_alt/3,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?",53
49 922 aaronmk 
bien.specimenDescription,/description,,
50 
bien.specimenDescription/_merge/1,/description/_merge/1,,
51 
"bien.specimenDescription/_merge/2/_label[label=""plant fungus""]/value","/description/_merge/2/_label[label=""plant fungus""]/value",,
52 915 aaronmk 
recordedBy,/verbatimcollectorname,,23
53 745 aaronmk 
institutionCode,/{museum_id/party/organizationname/_name/first},,11
54 
collectionCode,"/{museum_id/party/organizationname/_name/last,collectioncode_dwc}",Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12
55 
acceptedNameUsage,,,135
56 
acceptedNameUsageID,,,128
57 
associatedMedia,,,36
58 
associatedOccurrences,,,38
59 
associatedReferences,,,37
60 
associatedSequences,,,39
61 
associatedTaxa,,,40
62 
basisOfRecord,,Brad: OMIT? See http://rs.tdwg.org/dwc/terms/index.htm#basisOfRecord for definition of this term.,15
63 
bed,,,117
64 
behavior,,,29
65 741 aaronmk 
continent,,Brad: OMIT,59
66 
coordinateUncertaintyInMeters,,,88
67 745 aaronmk 
countryCode,,,64
68 741 aaronmk 
dataGeneralizations,,,17
69 745 aaronmk 
datasetID,,,10
70 
datasetName,,,13
71 
day,,Brad: OMIT,50
72 
dcterms:accessRights,,,5
73 741 aaronmk 
dcterms:bibliographicCitation,,,6
74 745 aaronmk 
dcterms:language,,,2
75 
dcterms:modified,,"Brad: Mapping to VegX is incorrect. I think is this merely an internal timestamp indicated when record last modified, not necessarily when determination (taxon name) last modified. Probably we should omit this field, although might be useful for updating changed records from this source.",1
76 
dcterms:references,,,7
77 
dcterms:rights,,,3
78 
dcterms:rightsHolder,,,4
79 741 aaronmk 
dcterms:type,,,0
80 745 aaronmk 
disposition,,,33
81 
dynamicProperties,,,18
82 
earliestAgeOrLowestStage,,,109
83 
earliestEonOrLowestEonothem,,,101
84 
earliestEpochOrLowestSeries,,,107
85 
earliestEraOrLowestErathem,,,103
86 
earliestPeriodOrLowestSystem,,,105
87 
endDayOfYear,,,47
88 
establishmentMeans,,,30
89 741 aaronmk 
eventID,,,41
90 745 aaronmk 
eventRemarks,,,55
91 741 aaronmk 
eventTime,,Brad: OMIT,45
92 745 aaronmk 
footprintSRS,,,92
93 
footprintSpatialFit,,,93
94 
formation,,,115
95 
geodeticDatum,,,87
96 
geologicalContextID,,,100
97 
georeferenceProtocol,,,96
98 741 aaronmk 
georeferenceRemarks,,,99
99 
georeferenceSources,,,97
100 745 aaronmk 
georeferenceVerificationStatus,,,98
101 915 aaronmk 
georeferencedBy,,Brad: Correct for VB. Nick: is there a way to specifically identify this party as collector of a specimen?,94
102 745 aaronmk 
georeferencedDate,,,95
103 
group,,,114
104 
higherClassification,,,141
105 
higherGeography,,,58
106 
higherGeographyID,,,57
107 
highestBiostratigraphicZone,,,112
108 
identificationID,,,118
109 
identificationQualifier,,,124
110 741 aaronmk 
identificationReferences,,,121
111 745 aaronmk 
identificationRemarks,,,123
112 
identificationVerificationStatus,,,122
113 
individualCount,,Brad: OMIT; not relevant for DwC plant specimen data.,25
114 915 aaronmk 
individualID,,"Brad: OMIT; db-specific element, not relevant to VB/VX",24
115 745 aaronmk 
informationWithheld,,,16
116 
institutionID,,,8
117 
island,,,62
118 
islandGroup,,,61
119 
latestAgeOrHighestStage,,,110
120 
latestEonOrHighestEonothem,,,102
121 
latestEpochOrHighestSeries,,,108
122 
latestEraOrHighestErathem,,,104
123 
latestPeriodOrHighestSystem,,,106
124 
lifeStage,,,27
125 
lithostratigraphicTerms,,,113
126 
locationAccordingTo,,,78
127 
locationID,,,56
128 
locationRemarks,,,79
129 
lowestBiostratigraphicZone,,,111
130 
maximumDistanceAboveSurfaceInMeters,,,77
131 
measurementAccuracy,,,169
132 
measurementDeterminedBy,,,172
133 
measurementDeterminedDate,,,171
134 
measurementID,,,166
135 
measurementMethod,,,173
136 741 aaronmk 
measurementRemarks,,,174
137 745 aaronmk 
measurementType,,,167
138 
measurementUnit,,,170
139 
measurementValue,,,168
140 
member,,,116
141 
minimumDistanceAboveSurfaceInMeters,,,76
142 
month,,,49
143 
municipality,,,67
144 
nameAccordingTo,,,138
145 
nameAccordingToID,,,131
146 
namePublishedIn,,,139
147 
namePublishedInID,,,132
148 
namePublishedInYear,,,140
149 
nomenclaturalCode,,,155
150 
nomenclaturalStatus,,,157
151 741 aaronmk 
occurrenceRemarks,,,21
152 745 aaronmk 
occurrenceStatus,,,31
153 
originalNameUsage,,,137
154 
originalNameUsageID,,,130
155 
otherCatalogNumbers,,,34
156 741 aaronmk 
ownerInstitutionCode,,,14
157 745 aaronmk 
parentNameUsage,,,136
158 
parentNameUsageID,,,129
159 
pointRadiusSpatialFit,,,90
160 
preparations,,Brad: OMIT,32
161 
previousIdentifications,,Brad: OMIT,35
162 
relatedResourceID,,Brad: OMIT,161
163 
relationshipAccordingTo,,,163
164 741 aaronmk 
relationshipEstablishedDate,,,164
165 745 aaronmk 
relationshipOfResource,,Brad: OMIT,162
166 741 aaronmk 
relationshipRemarks,,,165
167 745 aaronmk 
reproductiveCondition,,,28
168 
resourceID,,,160
169 
resourceRelationshipID,,,159
170 
samplingEffort,,,43
171 
samplingProtocol,,,42
172 
scientificNameID,,,127
173 741 aaronmk 
startDayOfYear,,,46
174 
subgenus,,,148
175 745 aaronmk 
taxonConceptID,,,133
176 741 aaronmk 
taxonID,,,126
177 745 aaronmk 
taxonRank,,,151
178 
taxonRemarks,,,158
179 
taxonomicStatus,,,156
180 
typeStatus,,Brad: OMIT (?). Indicates whether this specimen served as type for taxon name. Probably not relevant for BIEN,125
181 741 aaronmk 
verbatimCoordinateSystem,,,83
182 745 aaronmk 
verbatimCoordinates,,,80
183 741 aaronmk 
verbatimDepth,,,73
184 
verbatimElevation,,,70
185 
verbatimEventDate,,,51
186 745 aaronmk 
verbatimSRS,,,84
187 
verbatimTaxonRank,,,152
188 
vernacularName,,,154
189 
waterBody,,,60
190 
year,,,48