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| Revision:
Name Size Revision Age Author Comment
  _archive 1598 over 12 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  analysis 3076 about 12 years Aaron Marcuse-Kubitza Added top-level analysis dir for range modeling
  backups 9496 about 11 years Aaron Marcuse-Kubitza added backups/*.md5
  bin 9530 about 11 years Aaron Marcuse-Kubitza bin/tnrs_db: documented how to estimate total r...
  config 7801 over 11 years Aaron Marcuse-Kubitza root Makefile: VegBIEN DB: mk_db: Added command...
  exports 8798 about 11 years Aaron Marcuse-Kubitza exports/: svn:ignore *.csv
  inputs 9699 about 11 years Aaron Marcuse-Kubitza inputs/GBIF/table.run: table.tsv/make(): use ne...
  lib 9703 about 11 years Aaron Marcuse-Kubitza /Makefile: moved %/remake, %-remake to lib/comm...
  mappings 9459 about 11 years Aaron Marcuse-Kubitza bugfix: mappings/VegCore-VegBIEN.csv: place.geo...
  planning 9671 about 11 years Aaron Marcuse-Kubitza *.url: mailto URLs: use the standard e-mail dot...
  schemas 9671 about 11 years Aaron Marcuse-Kubitza *.url: mailto URLs: use the standard e-mail dot...
  web 9614 about 11 years Aaron Marcuse-Kubitza web/links/index.htm: updated to Firefox bookmar...
.htaccess 326 Bytes 8771 about 11 years Aaron Marcuse-Kubitza /.htaccess: use canonical URL without symlinks
Makefile 12.3 KB 9703 about 11 years Aaron Marcuse-Kubitza /Makefile: moved %/remake, %-remake to lib/comm...
README.TXT 22.8 KB 9532 about 11 years Aaron Marcuse-Kubitza bugfix: README.TXT: Full database import: scree...
fix_perms 97 Bytes 7560 over 11 years Aaron Marcuse-Kubitza Added root fix_perms
map 1001 Bytes 6949 over 11 years Aaron Marcuse-Kubitza vegbien_dest: Changed default $prefix to "", so...
new_terms.csv 38.1 KB 7222 over 11 years Aaron Marcuse-Kubitza new_terms.csv: Regenerated
run 450 Bytes 9074 about 11 years Aaron Marcuse-Kubitza *{.sh,run}: removed extra space between functio...
unmapped_terms.csv 13.1 KB 7201 over 11 years Aaron Marcuse-Kubitza **/new_terms.csv, **/unmapped_terms.csv: Regene...

Latest revisions

# Date Author Comment
9703 06/04/2013 06:31 PM Aaron Marcuse-Kubitza

/Makefile: moved %/remake, %-remake to lib/common.Makefile because they are generally useful

9702 06/04/2013 06:26 PM Aaron Marcuse-Kubitza

/Makefile: moved %/reinstall to lib/common.Makefile because it is generally useful

9701 06/04/2013 06:07 PM Aaron Marcuse-Kubitza

lib/sh/db.sh: mysql_cmd(): run the command with `time` because in mysql()'s output_data mode, no queries, and therefore no runtimes, are echoed, so the total runtime needs to be echoed separately instead. the total runtime is also useful in general, when many long-running queries are run and you would also like to know the total time (e.g. in make_analytical_db).

9700 06/04/2013 05:54 PM Aaron Marcuse-Kubitza

lib/sh/db.sh: limit(): usage: surrounded query in "" to clarify that it's a string, not a command

9699 06/01/2013 09:32 PM Aaron Marcuse-Kubitza

inputs/GBIF/table.run: table.tsv/make(): use new set_large_table to prevent table.tsv from being deleted on error for full export runs (while still deleting it on error for sample subset runs)

9698 06/01/2013 09:31 PM Aaron Marcuse-Kubitza

lib/sh/db.sh: added set_large_table alias, used to set to_file's $del flag based on $limit

9697 06/01/2013 09:30 PM Aaron Marcuse-Kubitza

lib/sh/util.sh: added exit2bool()

9696 06/01/2013 09:18 PM Aaron Marcuse-Kubitza

lib/sh/util.sh: int2bool(): renamed to int2exit() because it actually sets a boolean exit status rather than returning a boolean string

9695 06/01/2013 09:07 PM Aaron Marcuse-Kubitza

bugfix: lib/sh/util.sh: to_file(): also kw_params the other kw params if_not_exists, del

9694 06/01/2013 07:02 PM Aaron Marcuse-Kubitza

lib/sh/db.sh: mysql_cmd(): use --quick to avoid buffering entire result (which is slow and memory-intensive for large result sets). this option applies to both mysql() and mysqldump().

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