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Name Size Revision Age Author Comment
  _archive 1598 almost 13 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  analysis 3076 over 12 years Aaron Marcuse-Kubitza Added top-level analysis dir for range modeling
  backups 9496 over 11 years Aaron Marcuse-Kubitza added backups/*.md5
  bin 9741 over 11 years Aaron Marcuse-Kubitza bugfix: bin/make: use standard make logging por...
  config 7801 almost 12 years Aaron Marcuse-Kubitza root Makefile: VegBIEN DB: mk_db: Added command...
  exports 8798 over 11 years Aaron Marcuse-Kubitza exports/: svn:ignore *.csv
  inputs 9758 over 11 years Aaron Marcuse-Kubitza inputs/.TNRS/schema.sql: MatchedTaxon: renamed ...
  lib 9757 over 11 years Aaron Marcuse-Kubitza bugfix: lib/sql.py: parse_exception(): make_Dup...
  mappings 9459 over 11 years Aaron Marcuse-Kubitza bugfix: mappings/VegCore-VegBIEN.csv: place.geo...
  planning 9671 over 11 years Aaron Marcuse-Kubitza *.url: mailto URLs: use the standard e-mail dot...
  schemas 9758 over 11 years Aaron Marcuse-Kubitza inputs/.TNRS/schema.sql: MatchedTaxon: renamed ...
  web 9614 over 11 years Aaron Marcuse-Kubitza web/links/index.htm: updated to Firefox bookmar...
.htaccess 326 Bytes 8771 over 11 years Aaron Marcuse-Kubitza /.htaccess: use canonical URL without symlinks
Makefile 12.4 KB 9742 over 11 years Aaron Marcuse-Kubitza /Makefile: new config target (part of install):...
README.TXT 22.8 KB 9532 over 11 years Aaron Marcuse-Kubitza bugfix: README.TXT: Full database import: scree...
fix_perms 97 Bytes 7560 almost 12 years Aaron Marcuse-Kubitza Added root fix_perms
map 1001 Bytes 6949 about 12 years Aaron Marcuse-Kubitza vegbien_dest: Changed default $prefix to "", so...
new_terms.csv 38.1 KB 7222 almost 12 years Aaron Marcuse-Kubitza new_terms.csv: Regenerated
run 450 Bytes 9074 over 11 years Aaron Marcuse-Kubitza *{.sh,run}: removed extra space between functio...
unmapped_terms.csv 13.1 KB 7201 almost 12 years Aaron Marcuse-Kubitza **/new_terms.csv, **/unmapped_terms.csv: Regene...

Latest revisions

# Date Author Comment
9758 06/06/2013 02:11 PM Aaron Marcuse-Kubitza

inputs/.TNRS/schema.sql: MatchedTaxon: renamed to ValidMatchedTaxon since this view actually contains only the names with a valid match

9757 06/06/2013 12:59 PM Aaron Marcuse-Kubitza

bugfix: lib/sql.py: parse_exception(): make_DuplicateKeyException(): handle nested exceptions (which should never be generated, but may be in case of sql.py bugs such as wiki.vegpath.org/To_Do#Fixes > #1) by printing the nested exception and then rethrowing the original exception, so that the original exception does not get lost and still ends up at the end of the program's output, to enable debugging

9756 06/06/2013 11:08 AM Aaron Marcuse-Kubitza

inputs/.TNRS/schema.sql: tnrs: documented that when changing this table's schema, you must regenerate data.sql using `inputs/test_taxonomic_names/test_scrub`

9755 06/06/2013 08:09 AM Aaron Marcuse-Kubitza

inputs/GBIF/raw_occurrence_record/run: table.tsv.gz/make(): documented runtime (35 min)

9754 06/06/2013 07:52 AM Aaron Marcuse-Kubitza

bugfix: schemas/vegbien.sql: analytical_stem_view: speciesBinomialWithMorphospecies: if accepted name not specified, use matched name (matched*) or Name_submitted (concatenatedScientificName), as described at http://wiki.vegpath.org/2013-05-30_conference_call#fix-TNRS-speciesBinomialWithMorphospecies-to-include-alternatives-when-no-accepted-name

9753 06/06/2013 07:24 AM Aaron Marcuse-Kubitza

lib/sh/make.sh: make(): time all invocations of make

9752 06/06/2013 07:14 AM Aaron Marcuse-Kubitza

lib/sh/make.sh: make() at verbosity < 4, hide messages about making included Makefiles: use sed with a range expression (/.../,/.../) to also exclude all log messages between an opening "make ...Makefile" and a closing "make[#]: ...Makefile"

9751 06/06/2013 06:35 AM Aaron Marcuse-Kubitza

lib/sh/util.sh: log+ aliases: added clog++/-- aliases for cmds, which don't include log_local. these are useful when you can't just use "log++" because you need the command following it to be alias-expanded.

9750 06/06/2013 05:52 AM Aaron Marcuse-Kubitza

bugfix: lib/sh/make.sh: make(): use [:char_class:] exprs instead of \X char class abbrs because the \ abbrs are not supported on Linux

9749 06/06/2013 05:33 AM Aaron Marcuse-Kubitza

inputs/GBIF/table.run: table.tsv/make(): remake table.tsv.gz/make() after table.tsv is made

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