Revision 9875
Added by Aaron Marcuse-Kubitza over 11 years ago
| inputs/GBIF/raw_occurrence_record_plants/VegBIEN.csv | ||
|---|---|---|
| 1 |
VegCore,VegBIEN:/_setDefault:[source_id/source/shortname/_env:[name=source]]/path/_simplifyPath:[next=parent_id]/path,Comments
|
|
| 1 |
GBIF,VegBIEN:/_setDefault:[source_id/source/shortname/_env:[name=source]]/path/_simplifyPath:[next=parent_id]/path,Filter; Comments,Comments
|
|
| 2 | 2 |
accessionNumber,"/_if[@name=""if specimen""]/cond/_exists", |
| 3 | 3 |
dataProviderRecordID,"/_if[@name=""if specimen""]/cond/_exists", |
| 4 | 4 |
specimenHolderInstitutions,"/_if[@name=""if specimen""]/else/source/shortname/_first/1", |
| inputs/input.Makefile | ||
|---|---|---|
| 339 | 339 |
endif |
| 340 | 340 |
|
| 341 | 341 |
%/VegBIEN.csv: %/map.csv $(coreMap) |
| 342 |
<$< $(bin)/cat_cols 1 2$(if $(wildcard $*/run),|$(bin)/cols 1 1 3\ |
|
| 342 |
<$< $(bin)/cat_cols 1 2$(if $(wildcard\ |
|
| 343 |
$*/run),|$(bin)/cols 1 1 3|(head -1 $<; tail -n +2)\ |
|
| 343 | 344 |
)|$(bin)/join $(coreMap)|$(bin)/sort_map >$@ |
| 344 | 345 |
maps += $(autogenMaps) |
| 345 | 346 |
|
Also available in: Unified diff
bugfix: inputs/input.Makefile: %/VegBIEN.csv: use header from map.csv instead of the new columns, so that source.shortname is set to GBIF instead of VegCore