Revision 9876
Added by Aaron Marcuse-Kubitza over 11 years ago
| inputs/GBIF/raw_occurrence_record_plants/test.xml.ref | ||
|---|---|---|
| 9 | 9 |
<location> |
| 10 | 10 |
<authorlocationcode> |
| 11 | 11 |
<_alt> |
| 12 |
<1>$id</1>
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| 12 |
<1>$dataProviderRecordID</1>
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|
| 13 | 13 |
<2> |
| 14 | 14 |
<_join> |
| 15 |
<1>$institution_code</1>
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| 16 |
<2>$collection_code</2>
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| 17 |
<3>$catalogue_number</3>
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| 15 |
<1>$specimenHolderInstitutions</1>
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| 16 |
<2>$collection</2> |
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| 17 |
<3>$accessionNumber</3>
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| 18 | 18 |
</_join> |
| 19 | 19 |
</2> |
| 20 | 20 |
</_alt> |
| 21 | 21 |
</authorlocationcode> |
| 22 | 22 |
<elevation_m> |
| 23 | 23 |
<_avg> |
| 24 |
<1>$min_altitude</1>
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| 25 |
<2>$max_altitude</2>
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| 24 |
<1>$minimumElevationInMeters</1>
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| 25 |
<2>$maximumElevationInMeters</2>
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|
| 26 | 26 |
</_avg> |
| 27 | 27 |
</elevation_m> |
| 28 | 28 |
<iscultivated><_locationnarrative_is_cultivated><locationnarrative>$locality</locationnarrative></_locationnarrative_is_cultivated></iscultivated> |
| ... | ... | |
| 31 | 31 |
<aggregateoccurrence> |
| 32 | 32 |
<plantobservation> |
| 33 | 33 |
<specimenreplicate> |
| 34 |
<catalognumber_dwc>$catalogue_number</catalognumber_dwc>
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| 35 |
<collectioncode_dwc>$collection_code</collectioncode_dwc>
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| 34 |
<catalognumber_dwc>$accessionNumber</catalognumber_dwc>
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| 35 |
<collectioncode_dwc>$collection</collectioncode_dwc> |
|
| 36 | 36 |
<institution_id> |
| 37 | 37 |
<sourcelist> |
| 38 |
<name>$institution_code</name>
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| 38 |
<name>$specimenHolderInstitutions</name>
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|
| 39 | 39 |
<sourcename> |
| 40 | 40 |
<name> |
| 41 | 41 |
<_split> |
| 42 | 42 |
<separator>[,;] *</separator> |
| 43 |
<value>$institution_code</value>
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|
| 43 |
<value>$specimenHolderInstitutions</value>
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|
| 44 | 44 |
</_split> |
| 45 | 45 |
</name> |
| 46 | 46 |
</sourcename> |
| 47 | 47 |
</sourcelist> |
| 48 | 48 |
</institution_id> |
| 49 |
<sourceaccessioncode>$id</sourceaccessioncode>
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|
| 49 |
<sourceaccessioncode>$dataProviderRecordID</sourceaccessioncode>
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|
| 50 | 50 |
</specimenreplicate> |
| 51 | 51 |
</plantobservation> |
| 52 | 52 |
</aggregateoccurrence> |
| 53 |
<collector_id><party><fullname>$collector_name</fullname></party></collector_id>
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| 54 |
<sourceaccessioncode>$id</sourceaccessioncode>
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| 53 |
<collector_id><party><fullname>$recordedBy</fullname></party></collector_id>
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| 54 |
<sourceaccessioncode>$dataProviderRecordID</sourceaccessioncode>
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| 55 | 55 |
<taxondetermination> |
| 56 |
<party_id><party><fullname>$identifier_name</fullname></party></party_id>
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| 56 |
<party_id><party><fullname>$identifiedBy</fullname></party></party_id>
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| 57 | 57 |
<taxonverbatim_id> |
| 58 | 58 |
<taxonverbatim> |
| 59 | 59 |
<taxonlabel_id> |
| 60 | 60 |
<taxonlabel> |
| 61 | 61 |
<parent_id> |
| 62 | 62 |
<taxonlabel> |
| 63 |
<rank>$rank</rank>
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| 63 |
<rank>$taxonRank</rank>
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|
| 64 | 64 |
<parent_id> |
| 65 | 65 |
<taxonlabel> |
| 66 | 66 |
<rank>cultivar</rank> |
| ... | ... | |
| 77 | 77 |
<parent_id> |
| 78 | 78 |
<taxonlabel> |
| 79 | 79 |
<rank>species</rank> |
| 80 |
<taxonepithet>$species</taxonepithet>
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| 80 |
<taxonepithet>$specificEpithet</taxonepithet>
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|
| 81 | 81 |
<parent_id> |
| 82 | 82 |
<taxonlabel> |
| 83 | 83 |
<rank>genus</rank> |
| ... | ... | |
| 89 | 89 |
<parent_id> |
| 90 | 90 |
<taxonlabel> |
| 91 | 91 |
<rank>order</rank> |
| 92 |
<taxonepithet>$order_rank</taxonepithet>
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|
| 92 |
<taxonepithet>$order</taxonepithet> |
|
| 93 | 93 |
<parent_id> |
| 94 | 94 |
<taxonlabel> |
| 95 | 95 |
<rank>class</rank> |
| ... | ... | |
| 126 | 126 |
</parent_id> |
| 127 | 127 |
</taxonlabel> |
| 128 | 128 |
</parent_id> |
| 129 |
<rank>$rank</rank>
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| 129 |
<rank>$taxonRank</rank>
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|
| 130 | 130 |
<taxonomicname> |
| 131 | 131 |
<_merge_prefix> |
| 132 | 132 |
<prefix><_taxon_family_require_std><family>$family</family></_taxon_family_require_std></prefix> |
| 133 | 133 |
<value> |
| 134 | 134 |
<_alt> |
| 135 |
<1>$scientific_name</1>
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| 135 |
<1>$scientificName</1>
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|
| 136 | 136 |
<2> |
| 137 | 137 |
<_join_words> |
| 138 | 138 |
<2>$genus</2> |
| 139 |
<3>$species</3>
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| 139 |
<3>$specificEpithet</3>
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| 140 | 140 |
<4>$subspecies</4> |
| 141 | 141 |
</_join_words> |
| 142 | 142 |
</2> |
| ... | ... | |
| 148 | 148 |
</taxonlabel_id> |
| 149 | 149 |
<family>$family</family> |
| 150 | 150 |
<genus>$genus</genus> |
| 151 |
<specific_epithet>$species</specific_epithet>
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| 152 |
<taxonomicname>$scientific_name</taxonomicname>
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| 153 |
<verbatimrank>$rank</verbatimrank>
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| 151 |
<specific_epithet>$specificEpithet</specific_epithet>
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| 152 |
<taxonomicname>$scientificName</taxonomicname>
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| 153 |
<verbatimrank>$taxonRank</verbatimrank>
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| 154 | 154 |
</taxonverbatim> |
| 155 | 155 |
</taxonverbatim_id> |
| 156 |
<determinationdate><_dateRangeStart><value>$identification_date</value></_dateRangeStart></determinationdate>
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| 156 |
<determinationdate><_dateRangeStart><value>$dateIdentified</value></_dateRangeStart></determinationdate>
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| 157 | 157 |
</taxondetermination> |
| 158 | 158 |
</taxonoccurrence> |
| 159 | 159 |
<waterdepth_m> |
| 160 | 160 |
<_avg> |
| 161 |
<1>$min_depth</1>
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| 162 |
<2>$max_depth</2>
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| 161 |
<1>$minimumDepthInMeters</1>
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| 162 |
<2>$maximumDepthInMeters</2>
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| 163 | 163 |
</_avg> |
| 164 | 164 |
</waterdepth_m> |
| 165 | 165 |
</locationevent> |
| ... | ... | |
| 173 | 173 |
<_nullIf> |
| 174 | 174 |
<null>0</null> |
| 175 | 175 |
<type>float</type> |
| 176 |
<value>$latitude</value>
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| 176 |
<value>$decimalLatitude</value>
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| 177 | 177 |
</_nullIf> |
| 178 | 178 |
</latitude_deg> |
| 179 | 179 |
<longitude_deg> |
| 180 | 180 |
<_nullIf> |
| 181 | 181 |
<null>0</null> |
| 182 | 182 |
<type>float</type> |
| 183 |
<value>$longitude</value>
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| 183 |
<value>$decimalLongitude</value>
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| 184 | 184 |
</_nullIf> |
| 185 | 185 |
</longitude_deg> |
| 186 | 186 |
</coordinates> |
| 187 | 187 |
</coordinates_id> |
| 188 |
<continent>$continent_ocean</continent>
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| 188 |
<continent>$continent</continent> |
|
| 189 | 189 |
<country>$country</country> |
| 190 | 190 |
<county>$county</county> |
| 191 | 191 |
<matched_place_id> |
| ... | ... | |
| 198 | 198 |
<_nullIf> |
| 199 | 199 |
<null>0</null> |
| 200 | 200 |
<type>float</type> |
| 201 |
<value>$latitude</value>
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| 201 |
<value>$decimalLatitude</value>
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| 202 | 202 |
</_nullIf> |
| 203 | 203 |
</latitude_deg> |
| 204 | 204 |
<longitude_deg> |
| 205 | 205 |
<_nullIf> |
| 206 | 206 |
<null>0</null> |
| 207 | 207 |
<type>float</type> |
| 208 |
<value>$longitude</value>
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| 208 |
<value>$decimalLongitude</value>
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| 209 | 209 |
</_nullIf> |
| 210 | 210 |
</longitude_deg> |
| 211 | 211 |
</coordinates> |
| 212 | 212 |
</coordinates_id> |
| 213 | 213 |
<country>$country</country> |
| 214 | 214 |
<county>$county</county> |
| 215 |
<stateprovince>$state_province</stateprovince>
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| 215 |
<stateprovince>$stateProvince</stateprovince>
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| 216 | 216 |
</place> |
| 217 | 217 |
</matched_place_id> |
| 218 |
<stateprovince>$state_province</stateprovince>
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| 218 |
<stateprovince>$stateProvince</stateprovince>
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| 219 | 219 |
</place> |
| 220 | 220 |
</place_id> |
| 221 | 221 |
</locationplace> |
| ... | ... | |
| 225 | 225 |
</path> |
| 226 | 226 |
</_setDefault> |
| 227 | 227 |
</VegBIEN> |
| 228 |
Inserted 0 new rows into database |
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| 228 |
Inserted 36 new rows into database |
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Also available in: Unified diff
inputs/GBIF/raw_occurrence_record_plants/test.xml.ref: regenerated. updated for new staging table input columns, which are now the same as the output columns.