Revision 9882
Added by Aaron Marcuse-Kubitza over 11 years ago
| inputs/UBC/Specimen/test.xml.ref | ||
|---|---|---|
| 160 | 160 |
<_join_words> |
| 161 | 161 |
<1> |
| 162 | 162 |
<_join_words> |
| 163 |
<2>$genus</2>
|
|
| 163 |
<2><_filter_genus><value>$genus</value></_filter_genus></2>
|
|
| 164 | 164 |
<3>$specificEpithet</3> |
| 165 | 165 |
<5> |
| 166 | 166 |
<_join_words> |
| inputs/SpeciesLink/Specimen/VegBIEN.csv | ||
|---|---|---|
| 199 | 199 |
conceptual_darwin_2003_1_0_ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/1, |
| 200 | 200 |
dwc_dwcore_ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/1, |
| 201 | 201 |
dwc_terms_scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/1, |
| 202 |
conceptual_darwin_2003_1_0_Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
| 203 |
dwc_dwcore_Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
| 204 |
dwc_terms_genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
| 202 |
conceptual_darwin_2003_1_0_Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2/_filter_genus/value,
|
|
| 203 |
dwc_dwcore_Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2/_filter_genus/value,
|
|
| 204 |
dwc_terms_genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2/_filter_genus/value,
|
|
| 205 | 205 |
conceptual_darwin_2003_1_0_Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
| 206 | 206 |
dwc_dwcore_SpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
| 207 | 207 |
dwc_terms_specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
| inputs/NY/Ecatalog_all/test.xml.ref | ||
|---|---|---|
| 201 | 201 |
<1>$ScientificName</1> |
| 202 | 202 |
<2> |
| 203 | 203 |
<_join_words> |
| 204 |
<2>$Genus</2>
|
|
| 204 |
<2><_filter_genus><value>$Genus</value></_filter_genus></2>
|
|
| 205 | 205 |
<3>$Species</3> |
| 206 | 206 |
<4>$Subspecies</4> |
| 207 | 207 |
</_join_words> |
| inputs/HVAA/Specimen/VegBIEN.csv | ||
|---|---|---|
| 64 | 64 |
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonepithet/_if[@name=""if taxonomic name is epithet""]/cond/_alt:[2=true]/1/_taxonomic_name_is_epithet/rank", |
| 65 | 65 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/prefix/_taxon_family_require_std/family, |
| 66 | 66 |
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/1, |
| 67 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
| 67 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2/_filter_genus/value,
|
|
| 68 | 68 |
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
| 69 | 69 |
infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond", |
| 70 | 70 |
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then", |
| inputs/HVAA/Specimen/test.xml.ref | ||
|---|---|---|
| 183 | 183 |
<_join_words> |
| 184 | 184 |
<1> |
| 185 | 185 |
<_join_words> |
| 186 |
<2>$genus</2>
|
|
| 186 |
<2><_filter_genus><value>$genus</value></_filter_genus></2>
|
|
| 187 | 187 |
<3>$specificEpithet</3> |
| 188 | 188 |
<5> |
| 189 | 189 |
<_join_words> |
| inputs/MT/Specimen/VegBIEN.csv | ||
|---|---|---|
| 23 | 23 |
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet", |
| 24 | 24 |
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet", |
| 25 | 25 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/prefix/_taxon_family_require_std/family, |
| 26 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
| 26 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2/_filter_genus/value,
|
|
| 27 | 27 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/family, |
| 28 | 28 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus, |
| 29 | 29 |
locality,/location/locationnarrative/_merge/1, |
| inputs/MT/Specimen/test.xml.ref | ||
|---|---|---|
| 106 | 106 |
<taxonomicname> |
| 107 | 107 |
<_merge_prefix> |
| 108 | 108 |
<prefix><_taxon_family_require_std><family>$family</family></_taxon_family_require_std></prefix> |
| 109 |
<value>$genus</value>
|
|
| 109 |
<value><_filter_genus><value>$genus</value></_filter_genus></value>
|
|
| 110 | 110 |
</_merge_prefix> |
| 111 | 111 |
</taxonomicname> |
| 112 | 112 |
</taxonlabel> |
| inputs/XAL/Specimen/VegBIEN.csv | ||
|---|---|---|
| 41 | 41 |
darwin:Kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,phylum,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=kingdom]/taxonepithet", |
| 42 | 42 |
darwin:Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/prefix/_taxon_family_require_std/family, |
| 43 | 43 |
darwin:ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/1, |
| 44 |
darwin:Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
| 44 |
darwin:Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2/_filter_genus/value,
|
|
| 45 | 45 |
darwin:Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
| 46 | 46 |
darwin:Subspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/4, |
| 47 | 47 |
darwin:ScientificNameAuthor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/2, |
| inputs/XAL/Specimen/test.xml.ref | ||
|---|---|---|
| 1 | 1 |
Put template: |
| 2 |
<VegBIEN> |
|
| 3 |
<location id="-1"> |
|
| 4 |
<authorlocationcode> |
|
| 5 |
<_merge> |
|
| 6 |
<1>$InstitutionCode</1> |
|
| 7 |
<2>$CollectionCode</2> |
|
| 8 |
<3>$CatalogNumber</3> |
|
| 9 |
</_merge> |
|
| 10 |
</authorlocationcode> |
|
| 11 |
<elevation> |
|
| 12 |
<_avg> |
|
| 13 |
<max> |
|
| 14 |
<_units> |
|
| 15 |
<default>m</default> |
|
| 16 |
<to>m</to> |
|
| 17 |
<to></to> |
|
| 18 |
<value> |
|
| 19 |
<_replace> |
|
| 20 |
<\bca\.?></\bca\.?> |
|
| 21 |
<value>$MaximumElevation</value> |
|
| 22 |
</_replace> |
|
| 23 |
</value> |
|
| 24 |
</_units> |
|
| 25 |
</max> |
|
| 26 |
<min> |
|
| 27 |
<_units> |
|
| 28 |
<default>m</default> |
|
| 29 |
<to>m</to> |
|
| 30 |
<to></to> |
|
| 31 |
<value> |
|
| 32 |
<_rangeStart> |
|
| 33 |
<value> |
|
| 34 |
<_replace> |
|
| 35 |
<\bca\.?></\bca\.?> |
|
| 36 |
<value>$MinimumElevation</value> |
|
| 37 |
</_replace> |
|
| 38 |
</value> |
|
| 39 |
</_rangeStart> |
|
| 40 |
</value> |
|
| 41 |
</_units> |
|
| 42 |
</min> |
|
| 43 |
</_avg> |
|
| 44 |
</elevation> |
|
| 45 |
<elevationrange> |
|
| 46 |
<_range> |
|
| 47 |
<from> |
|
| 48 |
<_units> |
|
| 49 |
<default>m</default> |
|
| 50 |
<to>m</to> |
|
| 51 |
<to></to> |
|
| 52 |
<value> |
|
| 53 |
<_rangeStart> |
|
| 54 |
<value> |
|
| 55 |
<_replace> |
|
| 56 |
<\bca\.?></\bca\.?> |
|
| 57 |
<value>$MinimumElevation</value> |
|
| 58 |
</_replace> |
|
| 59 |
</value> |
|
| 60 |
</_rangeStart> |
|
| 61 |
</value> |
|
| 62 |
</_units> |
|
| 63 |
</from> |
|
| 64 |
<to> |
|
| 65 |
<_units> |
|
| 66 |
<default>m</default> |
|
| 67 |
<to>m</to> |
|
| 68 |
<to></to> |
|
| 69 |
<value> |
|
| 70 |
<_alt> |
|
| 71 |
<1> |
|
| 72 |
<_replace> |
|
| 73 |
<\bca\.?></\bca\.?> |
|
| 74 |
<value>$MaximumElevation</value> |
|
| 75 |
</_replace> |
|
| 76 |
</1> |
|
| 77 |
<2> |
|
| 78 |
<_rangeEnd> |
|
| 79 |
<value> |
|
| 80 |
<_replace> |
|
| 81 |
<\bca\.?></\bca\.?> |
|
| 82 |
<value>$MinimumElevation</value> |
|
| 83 |
</_replace> |
|
| 84 |
</value> |
|
| 85 |
</_rangeEnd> |
|
| 86 |
</2> |
|
| 87 |
</_alt> |
|
| 88 |
</value> |
|
| 89 |
</_units> |
|
| 90 |
</to> |
|
| 91 |
</_range> |
|
| 92 |
</elevationrange> |
|
| 93 |
<locationdetermination> |
|
| 94 |
<coordsaccuracy><_noCV><value>$CoordinatePrecision</value></_noCV></coordsaccuracy> |
|
| 95 |
<latitude> |
|
| 96 |
<_nullIf> |
|
| 97 |
<null>0</null> |
|
| 98 |
<type>float</type> |
|
| 99 |
<value>$Latitude</value> |
|
| 100 |
</_nullIf> |
|
| 101 |
</latitude> |
|
| 102 |
<longitude> |
|
| 103 |
<_nullIf> |
|
| 104 |
<null>0</null> |
|
| 105 |
<type>float</type> |
|
| 106 |
<value>$Longitude</value> |
|
| 107 |
</_nullIf> |
|
| 108 |
</longitude> |
|
| 109 |
<namedplace_id> |
|
| 110 |
<_simplifyPath> |
|
| 111 |
<next>parent_id/namedplace</next> |
|
| 112 |
<require>placename</require> |
|
| 113 |
<path> |
|
| 114 |
<namedplace> |
|
| 115 |
<rank>county</rank> |
|
| 116 |
<placename>$County</placename> |
|
| 117 |
<parent_id> |
|
| 118 |
<namedplace> |
|
| 119 |
<rank>stateProvince</rank> |
|
| 120 |
<placename>$StateProvince</placename> |
|
| 121 |
<parent_id> |
|
| 122 |
<namedplace> |
|
| 123 |
<rank>country</rank> |
|
| 124 |
<placename>$Country</placename> |
|
| 125 |
<parent_id> |
|
| 126 |
<namedplace> |
|
| 127 |
<rank>continent</rank> |
|
| 128 |
<placename>$ContinentOcean</placename> |
|
| 129 |
</namedplace> |
|
| 130 |
</parent_id> |
|
| 131 |
</namedplace> |
|
| 132 |
</parent_id> |
|
| 133 |
</namedplace> |
|
| 134 |
</parent_id> |
|
| 135 |
</namedplace> |
|
| 136 |
</path> |
|
| 137 |
</_simplifyPath> |
|
| 138 |
</namedplace_id> |
|
| 139 |
</locationdetermination> |
|
| 140 |
<locationevent> |
|
| 141 |
<obsenddate> |
|
| 142 |
<_date> |
|
| 143 |
<date> |
|
| 144 |
<_dateRangeEnd> |
|
| 145 |
<value> |
|
| 146 |
<_date> |
|
| 147 |
<day> |
|
| 148 |
<_nullIf> |
|
| 149 |
<null>0</null> |
|
| 150 |
<type>float</type> |
|
| 151 |
<value>$DayCollected</value> |
|
| 152 |
</_nullIf> |
|
| 153 |
</day> |
|
| 154 |
<month> |
|
| 155 |
<_nullIf> |
|
| 156 |
<null>0</null> |
|
| 157 |
<type>float</type> |
|
| 158 |
<value>$MonthCollected</value> |
|
| 159 |
</_nullIf> |
|
| 160 |
</month> |
|
| 161 |
<year> |
|
| 162 |
<_nullIf> |
|
| 163 |
<null>0</null> |
|
| 164 |
<type>float</type> |
|
| 165 |
<value>$YearCollected</value> |
|
| 166 |
</_nullIf> |
|
| 167 |
</year> |
|
| 168 |
</_date> |
|
| 169 |
</value> |
|
| 170 |
</_dateRangeEnd> |
|
| 171 |
</date> |
|
| 172 |
</_date> |
|
| 173 |
</obsenddate> |
|
| 174 |
<obsstartdate> |
|
| 175 |
<_date> |
|
| 176 |
<date> |
|
| 177 |
<_dateRangeStart> |
|
| 178 |
<value> |
|
| 179 |
<_date> |
|
| 180 |
<day> |
|
| 181 |
<_nullIf> |
|
| 182 |
<null>0</null> |
|
| 183 |
<type>float</type> |
|
| 184 |
<value>$DayCollected</value> |
|
| 185 |
</_nullIf> |
|
| 186 |
</day> |
|
| 187 |
<month> |
|
| 188 |
<_nullIf> |
|
| 189 |
<null>0</null> |
|
| 190 |
<type>float</type> |
|
| 191 |
<value>$MonthCollected</value> |
|
| 192 |
</_nullIf> |
|
| 193 |
</month> |
|
| 194 |
<year> |
|
| 195 |
<_nullIf> |
|
| 196 |
<null>0</null> |
|
| 197 |
<type>float</type> |
|
| 198 |
<value>$YearCollected</value> |
|
| 199 |
</_nullIf> |
|
| 200 |
</year> |
|
| 201 |
</_date> |
|
| 202 |
</value> |
|
| 203 |
</_dateRangeStart> |
|
| 204 |
</date> |
|
| 205 |
</_date> |
|
| 206 |
</obsstartdate> |
|
| 207 |
<taxonoccurrence> |
|
| 208 |
<aggregateoccurrence> |
|
| 209 |
<collectiondate> |
|
| 210 |
<_date> |
|
| 211 |
<date> |
|
| 212 |
<_date> |
|
| 213 |
<day> |
|
| 214 |
<_nullIf> |
|
| 215 |
<null>0</null> |
|
| 216 |
<type>float</type> |
|
| 217 |
<value>$DayCollected</value> |
|
| 218 |
</_nullIf> |
|
| 219 |
</day> |
|
| 220 |
<month> |
|
| 221 |
<_nullIf> |
|
| 222 |
<null>0</null> |
|
| 223 |
<type>float</type> |
|
| 224 |
<value>$MonthCollected</value> |
|
| 225 |
</_nullIf> |
|
| 226 |
</month> |
|
| 227 |
<year> |
|
| 228 |
<_nullIf> |
|
| 229 |
<null>0</null> |
|
| 230 |
<type>float</type> |
|
| 231 |
<value>$YearCollected</value> |
|
| 232 |
</_nullIf> |
|
| 233 |
</year> |
|
| 234 |
</_date> |
|
| 235 |
</date> |
|
| 236 |
</_date> |
|
| 237 |
</collectiondate> |
|
| 238 |
<count>$IndividualCount</count> |
|
| 239 |
<notes>$Notes</notes> |
|
| 240 |
<plantobservation> |
|
| 241 |
<collectionnumber> |
|
| 242 |
<_alt> |
|
| 243 |
<1>$CollectorNumber</1> |
|
| 244 |
<2>$FieldNumber</2> |
|
| 245 |
</_alt> |
|
| 246 |
</collectionnumber> |
|
| 247 |
<definedvalue fkey="tablerecord_id"> |
|
| 248 |
<userdefined_id> |
|
| 249 |
<userdefined> |
|
| 250 |
<tablename>plantobservation</tablename> |
|
| 251 |
<userdefinedname>sex</userdefinedname> |
|
| 252 |
</userdefined> |
|
| 253 |
</userdefined_id> |
|
| 254 |
<definedvalue>$Sex</definedvalue> |
|
| 255 |
</definedvalue> |
|
| 256 |
<specimenreplicate> |
|
| 257 |
<catalognumber_dwc>$CatalogNumber</catalognumber_dwc> |
|
| 258 |
<collectioncode_dwc>$CollectionCode</collectioncode_dwc> |
|
| 259 |
<institution_id><party><organizationname>$InstitutionCode</organizationname></party></institution_id> |
|
| 260 |
</specimenreplicate> |
|
| 261 |
</plantobservation> |
|
| 262 |
</aggregateoccurrence> |
|
| 263 |
<authortaxoncode> |
|
| 264 |
<_alt> |
|
| 265 |
<1> |
|
| 266 |
<_alt> |
|
| 267 |
<1>$CollectorNumber</1> |
|
| 268 |
<2>$FieldNumber</2> |
|
| 269 |
</_alt> |
|
| 270 |
</1> |
|
| 271 |
<2>$ScientificName</2> |
|
| 272 |
</_alt> |
|
| 273 |
</authortaxoncode> |
|
| 274 |
<taxondetermination> |
|
| 275 |
<party_id> |
|
| 276 |
<party> |
|
| 277 |
<givenname><_namePart><first>$IdentifiedBy</first></_namePart></givenname> |
|
| 278 |
<middlename><_namePart><middle>$IdentifiedBy</middle></_namePart></middlename> |
|
| 279 |
<surname><_namePart><last>$IdentifiedBy</last></_namePart></surname> |
|
| 280 |
</party> |
|
| 281 |
</party_id> |
|
| 282 |
<plantconcept_id> |
|
| 283 |
<plantconcept> |
|
| 284 |
<plantname_id> |
|
| 285 |
<_simplifyPath> |
|
| 286 |
<next>parent_id</next> |
|
| 287 |
<path> |
|
| 288 |
<plantname> |
|
| 289 |
<rank>binomial</rank> |
|
| 290 |
<plantname>$ScientificName</plantname> |
|
| 291 |
<parent_id> |
|
| 292 |
<plantname> |
|
| 293 |
<rank>authority</rank> |
|
| 294 |
<plantname>$ScientificNameAuthor</plantname> |
|
| 295 |
<parent_id> |
|
| 296 |
<plantname> |
|
| 297 |
<rank>subspecies</rank> |
|
| 298 |
<plantname>$Subspecies</plantname> |
|
| 299 |
<parent_id> |
|
| 300 |
<plantname> |
|
| 301 |
<rank>species</rank> |
|
| 302 |
<plantname>$Species</plantname> |
|
| 303 |
<parent_id> |
|
| 304 |
<plantname> |
|
| 305 |
<rank>genus</rank> |
|
| 306 |
<plantname>$Genus</plantname> |
|
| 307 |
<parent_id> |
|
| 308 |
<plantname> |
|
| 309 |
<rank>family</rank> |
|
| 310 |
<plantname>$Family</plantname> |
|
| 311 |
<parent_id> |
|
| 312 |
<plantname> |
|
| 313 |
<rank>order</rank> |
|
| 314 |
<plantname>$Order</plantname> |
|
| 315 |
<parent_id> |
|
| 316 |
<plantname> |
|
| 317 |
<rank>class</rank> |
|
| 318 |
<plantname>$Class</plantname> |
|
| 319 |
<parent_id> |
|
| 320 |
<plantname> |
|
| 321 |
<rank>subkingdom</rank> |
|
| 322 |
<plantname>$Phylum</plantname> |
|
| 323 |
<parent_id> |
|
| 324 |
<plantname> |
|
| 325 |
<rank>kingdom</rank> |
|
| 326 |
<plantname>$Kingdom</plantname> |
|
| 327 |
</plantname> |
|
| 328 |
</parent_id> |
|
| 329 |
</plantname> |
|
| 330 |
</parent_id> |
|
| 331 |
</plantname> |
|
| 332 |
</parent_id> |
|
| 333 |
</plantname> |
|
| 334 |
</parent_id> |
|
| 335 |
</plantname> |
|
| 336 |
</parent_id> |
|
| 337 |
</plantname> |
|
| 338 |
</parent_id> |
|
| 339 |
</plantname> |
|
| 340 |
</parent_id> |
|
| 341 |
</plantname> |
|
| 342 |
</parent_id> |
|
| 343 |
</plantname> |
|
| 344 |
</parent_id> |
|
| 345 |
</plantname> |
|
| 346 |
</path> |
|
| 347 |
</_simplifyPath> |
|
| 348 |
</plantname_id> |
|
| 349 |
</plantconcept> |
|
| 350 |
</plantconcept_id> |
|
| 351 |
<determinationdate> |
|
| 352 |
<_date> |
|
| 353 |
<date> |
|
| 354 |
<_dateRangeStart> |
|
| 355 |
<value> |
|
| 356 |
<_date> |
|
| 357 |
<day> |
|
| 358 |
<_nullIf> |
|
| 359 |
<null>0</null> |
|
| 360 |
<type>float</type> |
|
| 361 |
<value>$DayIdentified</value> |
|
| 362 |
</_nullIf> |
|
| 363 |
</day> |
|
| 364 |
<month> |
|
| 365 |
<_nullIf> |
|
| 366 |
<null>0</null> |
|
| 367 |
<type>float</type> |
|
| 368 |
<value>$MonthIdentified</value> |
|
| 369 |
</_nullIf> |
|
| 370 |
</month> |
|
| 371 |
<year> |
|
| 372 |
<_nullIf> |
|
| 373 |
<null>0</null> |
|
| 374 |
<type>float</type> |
|
| 375 |
<value>$YearIdentified</value> |
|
| 376 |
</_nullIf> |
|
| 377 |
</year> |
|
| 378 |
</_date> |
|
| 379 |
</value> |
|
| 380 |
</_dateRangeStart> |
|
| 381 |
</date> |
|
| 382 |
</_date> |
|
| 383 |
</determinationdate> |
|
| 384 |
</taxondetermination> |
|
| 385 |
<verbatimcollectorname>$Collector</verbatimcollectorname> |
|
| 386 |
</taxonoccurrence> |
|
| 387 |
<waterdepth> |
|
| 388 |
<_avg> |
|
| 389 |
<max> |
|
| 390 |
<_units> |
|
| 391 |
<default>m</default> |
|
| 392 |
<to>m</to> |
|
| 393 |
<to></to> |
|
| 394 |
<value> |
|
| 395 |
<_replace> |
|
| 396 |
<\bca\.?></\bca\.?> |
|
| 397 |
<value>$MaximumDepth</value> |
|
| 398 |
</_replace> |
|
| 399 |
</value> |
|
| 400 |
</_units> |
|
| 401 |
</max> |
|
| 402 |
<min> |
|
| 403 |
<_units> |
|
| 404 |
<default>m</default> |
|
| 405 |
<to>m</to> |
|
| 406 |
<to></to> |
|
| 407 |
<value> |
|
| 408 |
<_replace> |
|
| 409 |
<\bca\.?></\bca\.?> |
|
| 410 |
<value>$MinimumDepth</value> |
|
| 411 |
</_replace> |
|
| 412 |
</value> |
|
| 413 |
</_units> |
|
| 414 |
</min> |
|
| 415 |
</_avg> |
|
| 416 |
</waterdepth> |
|
| 417 |
</locationevent> |
|
| 418 |
<locationnarrative>$Locality</locationnarrative> |
|
| 419 |
</location> |
|
| 420 |
</VegBIEN> |
|
| 421 |
Inserted 47 new rows into database |
|
| 2 |
<VegBIEN/>Inserted 0 new rows into database |
|
| inputs/U/Specimen/test.xml.ref | ||
|---|---|---|
| 156 | 156 |
<taxonomicname> |
| 157 | 157 |
<_merge_prefix> |
| 158 | 158 |
<prefix><_taxon_family_require_std><family>$Family</family></_taxon_family_require_std></prefix> |
| 159 |
<value>$Genus</value>
|
|
| 159 |
<value><_filter_genus><value>$Genus</value></_filter_genus></value>
|
|
| 160 | 160 |
</_merge_prefix> |
| 161 | 161 |
</taxonomicname> |
| 162 | 162 |
</taxonlabel> |
| inputs/GBIF/Specimen/VegBIEN.csv | ||
|---|---|---|
| 25 | 25 |
InfraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/taxonepithet, |
| 26 | 26 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/prefix/_taxon_family_require_std/family, |
| 27 | 27 |
ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/1, |
| 28 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
| 28 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2/_filter_genus/value,
|
|
| 29 | 29 |
SpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
| 30 | 30 |
InfraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond", |
| 31 | 31 |
InfraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2, |
| inputs/QFA/Specimen/VegBIEN.csv | ||
|---|---|---|
| 52 | 52 |
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonepithet/_if[@name=""if taxonomic name is epithet""]/cond/_alt:[2=true]/1/_taxonomic_name_is_epithet/rank", |
| 53 | 53 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/prefix/_taxon_family_require_std/family, |
| 54 | 54 |
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/1, |
| 55 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
| 55 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2/_filter_genus/value,
|
|
| 56 | 56 |
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
| 57 | 57 |
infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond", |
| 58 | 58 |
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then", |
| inputs/JBM/Specimen/VegBIEN.csv | ||
|---|---|---|
| 44 | 44 |
kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,phylum,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=kingdom]/taxonepithet", |
| 45 | 45 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/prefix/_taxon_family_require_std/family, |
| 46 | 46 |
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/1, |
| 47 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
| 47 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2/_filter_genus/value,
|
|
| 48 | 48 |
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
| 49 | 49 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/family, |
| 50 | 50 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus, |
| inputs/UBC/Specimen/VegBIEN.csv | ||
|---|---|---|
| 51 | 51 |
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonepithet/_if[@name=""if taxonomic name is epithet""]/cond/_alt:[2=true]/1/_taxonomic_name_is_epithet/rank", |
| 52 | 52 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/prefix/_taxon_family_require_std/family, |
| 53 | 53 |
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/1, |
| 54 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
| 54 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2/_filter_genus/value,
|
|
| 55 | 55 |
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
| 56 | 56 |
infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond", |
| 57 | 57 |
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then", |
| inputs/HIBG/Specimen/test.xml.ref | ||
|---|---|---|
| 164 | 164 |
<_join_words> |
| 165 | 165 |
<1> |
| 166 | 166 |
<_join_words> |
| 167 |
<2>$genus</2>
|
|
| 167 |
<2><_filter_genus><value>$genus</value></_filter_genus></2>
|
|
| 168 | 168 |
<3>$specificEpithet</3> |
| 169 | 169 |
<5> |
| 170 | 170 |
<_join_words> |
| inputs/NY/Ecatalog_all/VegBIEN.csv | ||
|---|---|---|
| 45 | 45 |
Kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,phylum,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=kingdom]/taxonepithet", |
| 46 | 46 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/prefix/_taxon_family_require_std/family, |
| 47 | 47 |
ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/1, |
| 48 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
| 48 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2/_filter_genus/value,
|
|
| 49 | 49 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
| 50 | 50 |
Subspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/4, |
| 51 | 51 |
ScientificNameAuthor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/2, |
| inputs/UNCC/Specimen/test.xml.ref | ||
|---|---|---|
| 210 | 210 |
<1>$SciName</1> |
| 211 | 211 |
<2> |
| 212 | 212 |
<_join_words> |
| 213 |
<2>$genus</2>
|
|
| 213 |
<2><_filter_genus><value>$genus</value></_filter_genus></2>
|
|
| 214 | 214 |
<3>$species</3> |
| 215 | 215 |
<5> |
| 216 | 216 |
<_join_words> |
| inputs/TEAM/VL/VegBIEN.csv | ||
|---|---|---|
| 30 | 30 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet", |
| 31 | 31 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet", |
| 32 | 32 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/prefix/_taxon_family_require_std/family, |
| 33 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
| 33 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2/_filter_genus/value,
|
|
| 34 | 34 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
| 35 | 35 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/family, |
| 36 | 36 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus, |
| inputs/TEAM/VL/test.xml.ref | ||
|---|---|---|
| 97 | 97 |
<prefix><_taxon_family_require_std><family>$Family</family></_taxon_family_require_std></prefix> |
| 98 | 98 |
<value> |
| 99 | 99 |
<_join_words> |
| 100 |
<2>$Genus</2>
|
|
| 100 |
<2><_filter_genus><value>$Genus</value></_filter_genus></2>
|
|
| 101 | 101 |
<3>$Species</3> |
| 102 | 102 |
</_join_words> |
| 103 | 103 |
</value> |
| inputs/TEAM/VT/VegBIEN.csv | ||
|---|---|---|
| 30 | 30 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet", |
| 31 | 31 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet", |
| 32 | 32 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/prefix/_taxon_family_require_std/family, |
| 33 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
| 33 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2/_filter_genus/value,
|
|
| 34 | 34 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
| 35 | 35 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/family, |
| 36 | 36 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus, |
| inputs/TEAM/VT/test.xml.ref | ||
|---|---|---|
| 97 | 97 |
<prefix><_taxon_family_require_std><family>$Family</family></_taxon_family_require_std></prefix> |
| 98 | 98 |
<value> |
| 99 | 99 |
<_join_words> |
| 100 |
<2>$Genus</2>
|
|
| 100 |
<2><_filter_genus><value>$Genus</value></_filter_genus></2>
|
|
| 101 | 101 |
<3>$Species</3> |
| 102 | 102 |
</_join_words> |
| 103 | 103 |
</value> |
| inputs/ACAD/Specimen/VegBIEN.csv | ||
|---|---|---|
| 53 | 53 |
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonepithet/_if[@name=""if taxonomic name is epithet""]/cond/_alt:[2=true]/1/_taxonomic_name_is_epithet/rank", |
| 54 | 54 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/prefix/_taxon_family_require_std/family, |
| 55 | 55 |
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/1, |
| 56 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
| 56 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2/_filter_genus/value,
|
|
| 57 | 57 |
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
| 58 | 58 |
infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond", |
| 59 | 59 |
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then", |
| inputs/ACAD/Specimen/test.xml.ref | ||
|---|---|---|
| 182 | 182 |
<_join_words> |
| 183 | 183 |
<1> |
| 184 | 184 |
<_join_words> |
| 185 |
<2>$genus</2>
|
|
| 185 |
<2><_filter_genus><value>$genus</value></_filter_genus></2>
|
|
| 186 | 186 |
<3>$specificEpithet</3> |
| 187 | 187 |
<5> |
| 188 | 188 |
<_join_words> |
| inputs/WIN/Specimen/VegBIEN.csv | ||
|---|---|---|
| 48 | 48 |
taxonRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/rank, |
| 49 | 49 |
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonepithet/_if[@name=""if taxonomic name is epithet""]/cond/_alt:[2=true]/1/_taxonomic_name_is_epithet/rank", |
| 50 | 50 |
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/1, |
| 51 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
| 51 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2/_filter_genus/value,
|
|
| 52 | 52 |
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
| 53 | 53 |
infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond", |
| 54 | 54 |
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then", |
| inputs/WIN/Specimen/test.xml.ref | ||
|---|---|---|
| 161 | 161 |
<_join_words> |
| 162 | 162 |
<1> |
| 163 | 163 |
<_join_words> |
| 164 |
<2>$genus</2>
|
|
| 164 |
<2><_filter_genus><value>$genus</value></_filter_genus></2>
|
|
| 165 | 165 |
<3>$specificEpithet</3> |
| 166 | 166 |
<5> |
| 167 | 167 |
<_join_words> |
| inputs/CTFS/AggregateObservation/VegBIEN.csv | ||
|---|---|---|
| 31 | 31 |
subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=subspecies]/taxonepithet", |
| 32 | 32 |
speciesname,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet", |
| 33 | 33 |
Genus ,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet", |
| 34 |
Genus ,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
| 34 |
Genus ,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2/_filter_genus/value,
|
|
| 35 | 35 |
speciesname,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
| 36 | 36 |
subspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/4, |
| 37 | 37 |
Genus ,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus, |
| inputs/CTFS/AggregateObservation/test.xml.ref | ||
|---|---|---|
| 79 | 79 |
</parent_id> |
| 80 | 80 |
<taxonomicname> |
| 81 | 81 |
<_join_words> |
| 82 |
<2>$Genus </2>
|
|
| 82 |
<2><_filter_genus><value>$Genus </value></_filter_genus></2>
|
|
| 83 | 83 |
<3>$speciesname</3> |
| 84 | 84 |
<4>$subspecies</4> |
| 85 | 85 |
</_join_words> |
| inputs/TEX/Specimen/VegBIEN.csv | ||
|---|---|---|
| 28 | 28 |
FAMILY,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet", |
| 29 | 29 |
INFRA NAME,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/taxonepithet, |
| 30 | 30 |
FAMILY,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/prefix/_taxon_family_require_std/family, |
| 31 |
GENUS,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
| 31 |
GENUS,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2/_filter_genus/value,
|
|
| 32 | 32 |
SPECIES,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
| 33 | 33 |
INFRA NAME,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond", |
| 34 | 34 |
INFRA NAME,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2, |
| inputs/TEX/Specimen/test.xml.ref | ||
|---|---|---|
| 123 | 123 |
<_join_words> |
| 124 | 124 |
<1> |
| 125 | 125 |
<_join_words> |
| 126 |
<2>$GENUS</2>
|
|
| 126 |
<2><_filter_genus><value>$GENUS</value></_filter_genus></2>
|
|
| 127 | 127 |
<3>$SPECIES</3> |
| 128 | 128 |
<5>$INFRA NAME</5> |
| 129 | 129 |
</_join_words> |
| inputs/TEX/Specimen2/VegBIEN.csv | ||
|---|---|---|
| 35 | 35 |
GENUS,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet", |
| 36 | 36 |
FAMILY,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet", |
| 37 | 37 |
FAMILY,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/prefix/_taxon_family_require_std/family, |
| 38 |
GENUS,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
| 38 |
GENUS,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2/_filter_genus/value,
|
|
| 39 | 39 |
SPECIES,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
| 40 | 40 |
SUBSPECIES,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/4, |
| 41 | 41 |
VARIETY,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/6/_join_words:[1=""var. ""]/2", |
| inputs/TEX/Specimen2/test.xml.ref | ||
|---|---|---|
| 168 | 168 |
<_join_words> |
| 169 | 169 |
<1> |
| 170 | 170 |
<_join_words> |
| 171 |
<2>$GENUS</2>
|
|
| 171 |
<2><_filter_genus><value>$GENUS</value></_filter_genus></2>
|
|
| 172 | 172 |
<3>$SPECIES</3> |
| 173 | 173 |
<4>$SUBSPECIES</4> |
| 174 | 174 |
<6> |
| inputs/BRIT/specimen_flat/VegBIEN.csv | ||
|---|---|---|
| 59 | 59 |
Infra_Epithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/taxonepithet, |
| 60 | 60 |
Family_Name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/prefix/_taxon_family_require_std/family, |
| 61 | 61 |
Scientific_Name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/1, |
| 62 |
Genus_Name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
| 62 |
Genus_Name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2/_filter_genus/value,
|
|
| 63 | 63 |
Specific_Epithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
| 64 | 64 |
Infra_Epithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond", |
| 65 | 65 |
Infra_Epithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2, |
| inputs/BRIT/specimen_flat/test.xml.ref | ||
|---|---|---|
| 221 | 221 |
<_join_words> |
| 222 | 222 |
<1> |
| 223 | 223 |
<_join_words> |
| 224 |
<2>$Genus_Name</2>
|
|
| 224 |
<2><_filter_genus><value>$Genus_Name</value></_filter_genus></2>
|
|
| 225 | 225 |
<3>$Specific_Epithet</3> |
| 226 | 226 |
<5>$Infra_Epithet</5> |
| 227 | 227 |
</_join_words> |
| inputs/SALVIAS/plotObservations/VegBIEN.csv | ||
|---|---|---|
| 104 | 104 |
infra_rank_1,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/rank, |
| 105 | 105 |
infra_rank_1,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonepithet/_if[@name=""if taxonomic name is epithet""]/cond/_alt:[2=true]/1/_taxonomic_name_is_epithet/rank", |
| 106 | 106 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/prefix/_taxon_family_require_std/family, |
| 107 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
| 107 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2/_filter_genus/value,
|
|
| 108 | 108 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
| 109 | 109 |
infra_ep_1,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond", |
| 110 | 110 |
infra_rank_1,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then", |
| inputs/SALVIAS/plotObservations/test.xml.ref | ||
|---|---|---|
| 209 | 209 |
<_join_words> |
| 210 | 210 |
<1> |
| 211 | 211 |
<_join_words> |
| 212 |
<2>$Genus</2>
|
|
| 212 |
<2><_filter_genus><value>$Genus</value></_filter_genus></2>
|
|
| 213 | 213 |
<3>$Species</3> |
| 214 | 214 |
<5> |
| 215 | 215 |
<_join_words> |
| inputs/U/Specimen/VegBIEN.csv | ||
|---|---|---|
| 38 | 38 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet", |
| 39 | 39 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet", |
| 40 | 40 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/prefix/_taxon_family_require_std/family, |
| 41 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
| 41 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2/_filter_genus/value,
|
|
| 42 | 42 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/family, |
| 43 | 43 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus, |
| 44 | 44 |
Detyy,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value", |
| inputs/GBIF/raw_occurrence_record_plants/table.tsv.md5 | ||
|---|---|---|
| 1 |
483799d4022d4f717cc7ebaef7195516 |
|
| 1 |
79e606fe3b5069fda2ff7771211274f1 |
|
| inputs/GBIF/Specimen/test.xml.ref | ||
|---|---|---|
| 105 | 105 |
<1>$ScientificName</1> |
| 106 | 106 |
<2> |
| 107 | 107 |
<_join_words> |
| 108 |
<2>$Genus</2>
|
|
| 108 |
<2><_filter_genus><value>$Genus</value></_filter_genus></2>
|
|
| 109 | 109 |
<3>$SpecificEpithet</3> |
| 110 | 110 |
<5>$InfraspecificEpithet</5> |
| 111 | 111 |
</_join_words> |
| inputs/QFA/Specimen/test.xml.ref | ||
|---|---|---|
| 176 | 176 |
<_join_words> |
| 177 | 177 |
<1> |
| 178 | 178 |
<_join_words> |
| 179 |
<2>$genus</2>
|
|
| 179 |
<2><_filter_genus><value>$genus</value></_filter_genus></2>
|
|
| 180 | 180 |
<3>$specificEpithet</3> |
| 181 | 181 |
<5> |
| 182 | 182 |
<_join_words> |
| inputs/JBM/Specimen/test.xml.ref | ||
|---|---|---|
| 157 | 157 |
<1>$scientificName</1> |
| 158 | 158 |
<2> |
| 159 | 159 |
<_join_words> |
| 160 |
<2>$genus</2>
|
|
| 160 |
<2><_filter_genus><value>$genus</value></_filter_genus></2>
|
|
| 161 | 161 |
<3>$specificEpithet</3> |
| 162 | 162 |
</_join_words> |
| 163 | 163 |
</2> |
| inputs/HIBG/Specimen/VegBIEN.csv | ||
|---|---|---|
| 53 | 53 |
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonepithet/_if[@name=""if taxonomic name is epithet""]/cond/_alt:[2=true]/1/_taxonomic_name_is_epithet/rank", |
| 54 | 54 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/prefix/_taxon_family_require_std/family, |
| 55 | 55 |
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/1, |
| 56 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
| 56 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2/_filter_genus/value,
|
|
| 57 | 57 |
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
| 58 | 58 |
infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond", |
| 59 | 59 |
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then", |
| inputs/SpeciesLink/Specimen/test.xml.ref | ||
|---|---|---|
| 384 | 384 |
<2> |
| 385 | 385 |
<_join_words> |
| 386 | 386 |
<2> |
| 387 |
<_alt> |
|
| 388 |
<0>$conceptual_darwin_2003_1_0_Genus</0> |
|
| 389 |
<1>$dwc_dwcore_Genus</1> |
|
| 390 |
<2>$dwc_terms_genus</2> |
|
| 391 |
</_alt> |
|
| 387 |
<_filter_genus> |
|
| 388 |
<value> |
|
| 389 |
<_alt> |
|
| 390 |
<0>$conceptual_darwin_2003_1_0_Genus</0> |
|
| 391 |
<1>$dwc_dwcore_Genus</1> |
|
| 392 |
<2>$dwc_terms_genus</2> |
|
| 393 |
</_alt> |
|
| 394 |
</value> |
|
| 395 |
</_filter_genus> |
|
| 392 | 396 |
</2> |
| 393 | 397 |
<3> |
| 394 | 398 |
<_alt> |
| inputs/UNCC/Specimen/VegBIEN.csv | ||
|---|---|---|
| 96 | 96 |
infrarank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonepithet/_if[@name=""if taxonomic name is epithet""]/cond/_alt:[2=true]/1/_taxonomic_name_is_epithet/rank/_alt/2", |
| 97 | 97 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/prefix/_taxon_family_require_std/family, |
| 98 | 98 |
SciName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/1, |
| 99 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
| 99 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2/_filter_genus/value,
|
|
| 100 | 100 |
species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
| 101 | 101 |
infraname,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond", |
| 102 | 102 |
usdaRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then/_alt/1", |
| inputs/SALVIAS-CSV/Organism/VegBIEN.csv | ||
|---|---|---|
| 109 | 109 |
infra_rank_1,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/rank, |
| 110 | 110 |
infra_rank_1,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonepithet/_if[@name=""if taxonomic name is epithet""]/cond/_alt:[2=true]/1/_taxonomic_name_is_epithet/rank", |
| 111 | 111 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/prefix/_taxon_family_require_std/family, |
| 112 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
| 112 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2/_filter_genus/value,
|
|
| 113 | 113 |
specific_epithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
| 114 | 114 |
infra_ep_1,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond", |
| 115 | 115 |
infra_rank_1,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then", |
| inputs/REMIB/Specimen/VegBIEN.csv | ||
|---|---|---|
| 67 | 67 |
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet", |
| 68 | 68 |
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet", |
| 69 | 69 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/prefix/_taxon_family_require_std/family, |
| 70 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
| 70 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2/_filter_genus/value,
|
|
| 71 | 71 |
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
| 72 | 72 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/family, |
| 73 | 73 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus, |
| inputs/CVS/taxonObservation_/test.xml.ref | ||
|---|---|---|
| 149 | 149 |
<2> |
| 150 | 150 |
<_join_words> |
| 151 | 151 |
<2> |
| 152 |
<_alt> |
|
| 153 |
<1>$denorm_genus</1> |
|
| 154 |
<2>$genus</2> |
|
| 155 |
</_alt> |
|
| 152 |
<_filter_genus> |
|
| 153 |
<value> |
|
| 154 |
<_alt> |
|
| 155 |
<1>$denorm_genus</1> |
|
| 156 |
<2>$genus</2> |
|
| 157 |
</_alt> |
|
| 158 |
</value> |
|
| 159 |
</_filter_genus> |
|
| 156 | 160 |
</2> |
| 157 | 161 |
<3> |
| 158 | 162 |
<_alt> |
| inputs/CVS/taxonObservation_/VegBIEN.csv | ||
|---|---|---|
| 49 | 49 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/prefix/_taxon_family_require_std/family/_alt/2, |
| 50 | 50 |
plantNameWithAuthority,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/1, |
| 51 | 51 |
plantname,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/1, |
| 52 |
denorm_genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2/_alt/1, |
|
| 53 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2/_alt/2, |
|
| 52 |
denorm_genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2/_filter_genus/value/_alt/1,
|
|
| 53 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2/_filter_genus/value/_alt/2,
|
|
| 54 | 54 |
denorm_species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1/_alt/1, |
| 55 | 55 |
species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1/_alt/2, |
| 56 | 56 |
subspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/4/_alt/2, |
| inputs/SALVIAS-CSV/Organism/test.xml.ref | ||
|---|---|---|
| 236 | 236 |
<_join_words> |
| 237 | 237 |
<1> |
| 238 | 238 |
<_join_words> |
| 239 |
<2>$genus</2>
|
|
| 239 |
<2><_filter_genus><value>$genus</value></_filter_genus></2>
|
|
| 240 | 240 |
<3>$specific_epithet</3> |
| 241 | 241 |
<5> |
| 242 | 242 |
<_join_words> |
| inputs/REMIB/Specimen/test.xml.ref | ||
|---|---|---|
| 137 | 137 |
<prefix><_taxon_family_require_std><family>$family</family></_taxon_family_require_std></prefix> |
| 138 | 138 |
<value> |
| 139 | 139 |
<_join_words> |
| 140 |
<2>$genus</2>
|
|
| 140 |
<2><_filter_genus><value>$genus</value></_filter_genus></2>
|
|
| 141 | 141 |
<3>$specificEpithet</3> |
| 142 | 142 |
</_join_words> |
| 143 | 143 |
</value> |
| inputs/FIA/occurrence_all/test.xml.ref | ||
|---|---|---|
| 126 | 126 |
<1>$taxonName</1> |
| 127 | 127 |
<2> |
| 128 | 128 |
<_join_words> |
| 129 |
<2>$genus</2>
|
|
| 129 |
<2><_filter_genus><value>$genus</value></_filter_genus></2>
|
|
| 130 | 130 |
<3>$specificEpithet</3> |
| 131 | 131 |
<4>$subspecies</4> |
| 132 | 132 |
<6> |
| inputs/TRT/Specimen/test.xml.ref | ||
|---|---|---|
| 196 | 196 |
<_join_words> |
| 197 | 197 |
<1> |
| 198 | 198 |
<_join_words> |
| 199 |
<2>$genus</2>
|
|
| 199 |
<2><_filter_genus><value>$genus</value></_filter_genus></2>
|
|
| 200 | 200 |
<3>$specificEpithet</3> |
| 201 | 201 |
<5> |
| 202 | 202 |
<_join_words> |
| inputs/VASCAN/Taxon/test.xml.ref | ||
|---|---|---|
| 95 | 95 |
<_join_words> |
| 96 | 96 |
<1> |
| 97 | 97 |
<_join_words> |
| 98 |
<2>$genus</2>
|
|
| 98 |
<2><_filter_genus><value>$genus</value></_filter_genus></2>
|
|
| 99 | 99 |
<3>$specificEpithet</3> |
| 100 | 100 |
<5> |
| 101 | 101 |
<_join_words> |
| inputs/TRTE/Specimen/test.xml.ref | ||
|---|---|---|
| 160 | 160 |
<_join_words> |
| 161 | 161 |
<1> |
| 162 | 162 |
<_join_words> |
| 163 |
<2>$genus</2>
|
|
| 163 |
<2><_filter_genus><value>$genus</value></_filter_genus></2>
|
|
| 164 | 164 |
<3>$specificEpithet</3> |
| 165 | 165 |
<5> |
| 166 | 166 |
<_join_words> |
| inputs/FIA/occurrence_all/VegBIEN.csv | ||
|---|---|---|
| 48 | 48 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/prefix/_taxon_family_require_std/family, |
| 49 | 49 |
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/1, |
| 50 | 50 |
taxonName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/1, |
| 51 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
| 51 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2/_filter_genus/value,
|
|
| 52 | 52 |
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
| 53 | 53 |
subspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/4, |
| 54 | 54 |
variety,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/6/_join_words:[1=""var. ""]/2", |
| inputs/TRT/Specimen/VegBIEN.csv | ||
|---|---|---|
| 56 | 56 |
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonepithet/_if[@name=""if taxonomic name is epithet""]/cond/_alt:[2=true]/1/_taxonomic_name_is_epithet/rank", |
| 57 | 57 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/prefix/_taxon_family_require_std/family, |
| 58 | 58 |
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/1, |
| 59 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
| 59 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2/_filter_genus/value,
|
|
| 60 | 60 |
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
| 61 | 61 |
infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond", |
| 62 | 62 |
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then", |
| inputs/VASCAN/Taxon/VegBIEN.csv | ||
|---|---|---|
| 15 | 15 |
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonepithet/_if[@name=""if taxonomic name is epithet""]/cond/_alt:[2=true]/1/_taxonomic_name_is_epithet/rank", |
| 16 | 16 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/prefix/_taxon_family_require_std/family, |
| 17 | 17 |
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/1, |
| 18 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
| 18 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2/_filter_genus/value,
|
|
| 19 | 19 |
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
| 20 | 20 |
infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond", |
| 21 | 21 |
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then", |
| inputs/TRTE/Specimen/VegBIEN.csv | ||
|---|---|---|
| 49 | 49 |
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonepithet/_if[@name=""if taxonomic name is epithet""]/cond/_alt:[2=true]/1/_taxonomic_name_is_epithet/rank", |
| 50 | 50 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/prefix/_taxon_family_require_std/family, |
| 51 | 51 |
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/1, |
| 52 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
| 52 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2/_filter_genus/value,
|
|
| 53 | 53 |
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
| 54 | 54 |
infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond", |
| 55 | 55 |
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then", |
| inputs/ARIZ/omoccurrences/test.xml.ref | ||
|---|---|---|
| 137 | 137 |
<_join_words> |
| 138 | 138 |
<1> |
| 139 | 139 |
<_join_words> |
| 140 |
<2>$genus</2>
|
|
| 140 |
<2><_filter_genus><value>$genus</value></_filter_genus></2>
|
|
| 141 | 141 |
<3>$specificEpithet</3> |
| 142 | 142 |
<5> |
| 143 | 143 |
<_join_words> |
| inputs/MO/Specimen/test.xml.ref | ||
|---|---|---|
| 106 | 106 |
<1>$name</1> |
| 107 | 107 |
<2> |
| 108 | 108 |
<_join_words> |
| 109 |
<2>$genusnamepart</2>
|
|
| 109 |
<2><_filter_genus><value>$genusnamepart</value></_filter_genus></2>
|
|
| 110 | 110 |
<3>$speciesnamepart</3> |
| 111 | 111 |
<5> |
| 112 | 112 |
<_join_words> |
| inputs/VegBank/taxonobservation_/test.xml.ref | ||
|---|---|---|
| 111 | 111 |
<prefix><_taxon_family_require_std><family>$Family</family></_taxon_family_require_std></prefix> |
| 112 | 112 |
<value> |
| 113 | 113 |
<_join_words> |
| 114 |
<2>$Genus</2>
|
|
| 114 |
<2><_filter_genus><value>$Genus</value></_filter_genus></2>
|
|
| 115 | 115 |
<3>$Species</3> |
| 116 | 116 |
<4>$Subspecies</4> |
| 117 | 117 |
<6> |
| inputs/ARIZ/omoccurrences/VegBIEN.csv | ||
|---|---|---|
| 58 | 58 |
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonepithet/_if[@name=""if taxonomic name is epithet""]/cond/_alt:[2=true]/1/_taxonomic_name_is_epithet/rank", |
| 59 | 59 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/prefix/_taxon_family_require_std/family, |
| 60 | 60 |
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/1, |
| 61 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
| 61 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2/_filter_genus/value,
|
|
| 62 | 62 |
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
| 63 | 63 |
infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond", |
| 64 | 64 |
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then", |
| inputs/MO/Specimen/VegBIEN.csv | ||
|---|---|---|
| 38 | 38 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/prefix/_taxon_family_require_std/family, |
| 39 | 39 |
fullname,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/1, |
| 40 | 40 |
name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/1, |
| 41 |
genusnamepart,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
| 41 |
genusnamepart,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2/_filter_genus/value,
|
|
| 42 | 42 |
speciesnamepart,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
| 43 | 43 |
epithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond", |
| 44 | 44 |
rankabbreviation,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then", |
| inputs/VegBank/taxonobservation_/VegBIEN.csv | ||
|---|---|---|
| 36 | 36 |
Class,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=class]/taxonepithet", |
| 37 | 37 |
Kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,phylum,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=kingdom]/taxonepithet", |
| 38 | 38 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/prefix/_taxon_family_require_std/family, |
| 39 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
| 39 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2/_filter_genus/value,
|
|
| 40 | 40 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
| 41 | 41 |
Subspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/4, |
| 42 | 42 |
Variety,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/6/_join_words:[1=""var. ""]/2", |
| mappings/VegCore-VegBIEN.csv | ||
|---|---|---|
| 270 | 270 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/prefix/_taxon_family_require_std/family, |
| 271 | 271 |
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/1, |
| 272 | 272 |
taxonName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/1, |
| 273 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
| 273 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2/_filter_genus/value,
|
|
| 274 | 274 |
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
| 275 | 275 |
taxonIsCanonical,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/2/_if[@name=""if has verbatim name""]/cond/_exists", |
| 276 | 276 |
morphospeciesSuffix,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/2/_if[@name=""if has verbatim name""]/else", |
Also available in: Unified diff
mappings/VegCore-VegBIEN.csv: genus->taxonlabel.taxonomicname: filter out genera that contain numbers (using new _filter_genus()), which break TNRS and prevent it from matching any other parts of the name. later, these genera can instead be moved to the end of the name, where TNRS will correctly match them as Unmatched_terms.