Revision 9882
Added by Aaron Marcuse-Kubitza over 11 years ago
| test.xml.ref | ||
|---|---|---|
| 1 | 1 |
Put template: |
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<VegBIEN> |
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<location id="-1"> |
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<authorlocationcode> |
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<_merge> |
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<1>$InstitutionCode</1> |
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<2>$CollectionCode</2> |
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<3>$CatalogNumber</3> |
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</_merge> |
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</authorlocationcode> |
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<elevation> |
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<_avg> |
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<max> |
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<_units> |
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<default>m</default> |
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<to>m</to> |
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<to></to> |
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<value> |
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<_replace> |
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<\bca\.?></\bca\.?> |
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<value>$MaximumElevation</value> |
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</_replace> |
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</value> |
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</_units> |
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</max> |
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<min> |
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<_units> |
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<default>m</default> |
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<to>m</to> |
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<to></to> |
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<value> |
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<_rangeStart> |
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<value> |
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<_replace> |
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<\bca\.?></\bca\.?> |
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<value>$MinimumElevation</value> |
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</_replace> |
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</value> |
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</_rangeStart> |
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</value> |
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</_units> |
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</min> |
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</_avg> |
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</elevation> |
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<elevationrange> |
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<_range> |
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<from> |
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<_units> |
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<default>m</default> |
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<to>m</to> |
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<to></to> |
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<value> |
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<_rangeStart> |
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<value> |
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<_replace> |
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<\bca\.?></\bca\.?> |
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<value>$MinimumElevation</value> |
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</_replace> |
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</value> |
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</_rangeStart> |
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</value> |
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</_units> |
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</from> |
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<to> |
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<_units> |
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<default>m</default> |
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<to>m</to> |
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<to></to> |
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<value> |
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<_alt> |
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<1> |
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<_replace> |
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<\bca\.?></\bca\.?> |
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<value>$MaximumElevation</value> |
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</_replace> |
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</1> |
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<2> |
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<_rangeEnd> |
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<value> |
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<_replace> |
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<\bca\.?></\bca\.?> |
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<value>$MinimumElevation</value> |
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</_replace> |
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</value> |
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</_rangeEnd> |
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</2> |
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</_alt> |
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</value> |
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</_units> |
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</to> |
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</_range> |
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</elevationrange> |
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<locationdetermination> |
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<coordsaccuracy><_noCV><value>$CoordinatePrecision</value></_noCV></coordsaccuracy> |
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<latitude> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$Latitude</value> |
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</_nullIf> |
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</latitude> |
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<longitude> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$Longitude</value> |
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</_nullIf> |
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</longitude> |
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<namedplace_id> |
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<_simplifyPath> |
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<next>parent_id/namedplace</next> |
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<require>placename</require> |
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<path> |
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<namedplace> |
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<rank>county</rank> |
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<placename>$County</placename> |
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<parent_id> |
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<namedplace> |
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<rank>stateProvince</rank> |
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<placename>$StateProvince</placename> |
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<parent_id> |
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<namedplace> |
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<rank>country</rank> |
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<placename>$Country</placename> |
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<parent_id> |
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<namedplace> |
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<rank>continent</rank> |
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<placename>$ContinentOcean</placename> |
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</namedplace> |
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</parent_id> |
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</namedplace> |
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</parent_id> |
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</namedplace> |
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</parent_id> |
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</namedplace> |
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</path> |
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</_simplifyPath> |
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</namedplace_id> |
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</locationdetermination> |
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<locationevent> |
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<obsenddate> |
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<_date> |
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<date> |
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<_dateRangeEnd> |
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<value> |
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<_date> |
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<day> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$DayCollected</value> |
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</_nullIf> |
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</day> |
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<month> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$MonthCollected</value> |
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</_nullIf> |
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</month> |
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<year> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$YearCollected</value> |
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</_nullIf> |
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</year> |
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</_date> |
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</value> |
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</_dateRangeEnd> |
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</date> |
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</_date> |
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</obsenddate> |
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<obsstartdate> |
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<_date> |
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<date> |
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<_dateRangeStart> |
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<value> |
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<_date> |
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<day> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$DayCollected</value> |
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</_nullIf> |
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</day> |
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<month> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$MonthCollected</value> |
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</_nullIf> |
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</month> |
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<year> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$YearCollected</value> |
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</_nullIf> |
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</year> |
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</_date> |
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</value> |
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</_dateRangeStart> |
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</date> |
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</_date> |
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</obsstartdate> |
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<taxonoccurrence> |
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<aggregateoccurrence> |
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<collectiondate> |
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<_date> |
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<date> |
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<_date> |
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<day> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$DayCollected</value> |
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</_nullIf> |
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</day> |
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<month> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$MonthCollected</value> |
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</_nullIf> |
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</month> |
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<year> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$YearCollected</value> |
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</_nullIf> |
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</year> |
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</_date> |
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</date> |
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</_date> |
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</collectiondate> |
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<count>$IndividualCount</count> |
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<notes>$Notes</notes> |
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<plantobservation> |
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<collectionnumber> |
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<_alt> |
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<1>$CollectorNumber</1> |
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<2>$FieldNumber</2> |
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</_alt> |
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</collectionnumber> |
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<definedvalue fkey="tablerecord_id"> |
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<userdefined_id> |
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<userdefined> |
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<tablename>plantobservation</tablename> |
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<userdefinedname>sex</userdefinedname> |
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</userdefined> |
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</userdefined_id> |
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<definedvalue>$Sex</definedvalue> |
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</definedvalue> |
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<specimenreplicate> |
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<catalognumber_dwc>$CatalogNumber</catalognumber_dwc> |
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<collectioncode_dwc>$CollectionCode</collectioncode_dwc> |
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<institution_id><party><organizationname>$InstitutionCode</organizationname></party></institution_id> |
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</specimenreplicate> |
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</plantobservation> |
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</aggregateoccurrence> |
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<authortaxoncode> |
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<_alt> |
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<1> |
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<_alt> |
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<1>$CollectorNumber</1> |
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<2>$FieldNumber</2> |
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</_alt> |
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</1> |
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<2>$ScientificName</2> |
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</_alt> |
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</authortaxoncode> |
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<taxondetermination> |
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<party_id> |
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<party> |
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<givenname><_namePart><first>$IdentifiedBy</first></_namePart></givenname> |
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<middlename><_namePart><middle>$IdentifiedBy</middle></_namePart></middlename> |
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<surname><_namePart><last>$IdentifiedBy</last></_namePart></surname> |
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</party> |
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</party_id> |
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<plantconcept_id> |
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<plantconcept> |
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<plantname_id> |
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<_simplifyPath> |
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<next>parent_id</next> |
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<path> |
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<plantname> |
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<rank>binomial</rank> |
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<plantname>$ScientificName</plantname> |
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<parent_id> |
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<plantname> |
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<rank>authority</rank> |
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<plantname>$ScientificNameAuthor</plantname> |
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<parent_id> |
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<plantname> |
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<rank>subspecies</rank> |
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<plantname>$Subspecies</plantname> |
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<parent_id> |
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<plantname> |
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<rank>species</rank> |
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<plantname>$Species</plantname> |
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<parent_id> |
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<plantname> |
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<rank>genus</rank> |
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<plantname>$Genus</plantname> |
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<parent_id> |
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<plantname> |
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<rank>family</rank> |
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<plantname>$Family</plantname> |
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<parent_id> |
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<plantname> |
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<rank>order</rank> |
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<plantname>$Order</plantname> |
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<parent_id> |
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<plantname> |
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<rank>class</rank> |
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<plantname>$Class</plantname> |
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<parent_id> |
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<plantname> |
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<rank>subkingdom</rank> |
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<plantname>$Phylum</plantname> |
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<parent_id> |
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<plantname> |
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<rank>kingdom</rank> |
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<plantname>$Kingdom</plantname> |
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</plantname> |
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</parent_id> |
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</plantname> |
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</parent_id> |
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</plantname> |
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</parent_id> |
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</plantname> |
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</parent_id> |
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</plantname> |
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</parent_id> |
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</plantname> |
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</parent_id> |
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</plantname> |
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</parent_id> |
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</plantname> |
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</parent_id> |
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</plantname> |
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</parent_id> |
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</plantname> |
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</path> |
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</_simplifyPath> |
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</plantname_id> |
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</plantconcept> |
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</plantconcept_id> |
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<determinationdate> |
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<_date> |
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<date> |
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<_dateRangeStart> |
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<value> |
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<_date> |
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<day> |
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<_nullIf> |
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<null>0</null> |
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| 360 |
<type>float</type> |
|
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<value>$DayIdentified</value> |
|
| 362 |
</_nullIf> |
|
| 363 |
</day> |
|
| 364 |
<month> |
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| 365 |
<_nullIf> |
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<null>0</null> |
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| 367 |
<type>float</type> |
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<value>$MonthIdentified</value> |
|
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</_nullIf> |
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</month> |
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<year> |
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| 372 |
<_nullIf> |
|
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<null>0</null> |
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<type>float</type> |
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<value>$YearIdentified</value> |
|
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</_nullIf> |
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</year> |
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</_date> |
|
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</value> |
|
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</_dateRangeStart> |
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</date> |
|
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</_date> |
|
| 383 |
</determinationdate> |
|
| 384 |
</taxondetermination> |
|
| 385 |
<verbatimcollectorname>$Collector</verbatimcollectorname> |
|
| 386 |
</taxonoccurrence> |
|
| 387 |
<waterdepth> |
|
| 388 |
<_avg> |
|
| 389 |
<max> |
|
| 390 |
<_units> |
|
| 391 |
<default>m</default> |
|
| 392 |
<to>m</to> |
|
| 393 |
<to></to> |
|
| 394 |
<value> |
|
| 395 |
<_replace> |
|
| 396 |
<\bca\.?></\bca\.?> |
|
| 397 |
<value>$MaximumDepth</value> |
|
| 398 |
</_replace> |
|
| 399 |
</value> |
|
| 400 |
</_units> |
|
| 401 |
</max> |
|
| 402 |
<min> |
|
| 403 |
<_units> |
|
| 404 |
<default>m</default> |
|
| 405 |
<to>m</to> |
|
| 406 |
<to></to> |
|
| 407 |
<value> |
|
| 408 |
<_replace> |
|
| 409 |
<\bca\.?></\bca\.?> |
|
| 410 |
<value>$MinimumDepth</value> |
|
| 411 |
</_replace> |
|
| 412 |
</value> |
|
| 413 |
</_units> |
|
| 414 |
</min> |
|
| 415 |
</_avg> |
|
| 416 |
</waterdepth> |
|
| 417 |
</locationevent> |
|
| 418 |
<locationnarrative>$Locality</locationnarrative> |
|
| 419 |
</location> |
|
| 420 |
</VegBIEN> |
|
| 421 |
Inserted 47 new rows into database |
|
| 2 |
<VegBIEN/>Inserted 0 new rows into database |
|
Also available in: Unified diff
mappings/VegCore-VegBIEN.csv: genus->taxonlabel.taxonomicname: filter out genera that contain numbers (using new _filter_genus()), which break TNRS and prevent it from matching any other parts of the name. later, these genera can instead be moved to the end of the name, where TNRS will correctly match them as Unmatched_terms.