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Name Size Revision Age Author Comment
  _archive 1598 over 12 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  analysis 3076 over 12 years Aaron Marcuse-Kubitza Added top-level analysis dir for range modeling
  backups 9897 over 11 years Aaron Marcuse-Kubitza added backups/TNRS.backup.md5, vegbien.r9459.ba...
  bin 9915 over 11 years Aaron Marcuse-Kubitza bin/make_analytical_db: added `/run export_` to...
  config 7801 over 11 years Aaron Marcuse-Kubitza root Makefile: VegBIEN DB: mk_db: Added command...
  exports 8798 over 11 years Aaron Marcuse-Kubitza exports/: svn:ignore *.csv
  inputs 9920 over 11 years Aaron Marcuse-Kubitza inputs/.geoscrub/geoscrub_output/postprocess.sq...
  lib 9912 over 11 years Aaron Marcuse-Kubitza lib/tnrs.py: HTTP requests: rewrapped lines
  mappings 9882 over 11 years Aaron Marcuse-Kubitza mappings/VegCore-VegBIEN.csv: genus->taxonlabel...
  planning 9671 over 11 years Aaron Marcuse-Kubitza *.url: mailto URLs: use the standard e-mail dot...
  schemas 9919 over 11 years Aaron Marcuse-Kubitza schemas/vegbien.sql: higher_plant_group_nodes: ...
  web 9854 over 11 years Aaron Marcuse-Kubitza *{.sh,run}: use simpler .rel() instead of `. "$...
.htaccess 326 Bytes 8771 over 11 years Aaron Marcuse-Kubitza /.htaccess: use canonical URL without symlinks
Makefile 12.5 KB 9917 over 11 years Aaron Marcuse-Kubitza bugfix: /Makefile: postgres-Linux: phpPgAdmin: ...
README.TXT 23.2 KB 9899 over 11 years Aaron Marcuse-Kubitza bugfix: /README.TXT: Full database import: adde...
fix_perms 97 Bytes 7560 almost 12 years Aaron Marcuse-Kubitza Added root fix_perms
map 1001 Bytes 6949 almost 12 years Aaron Marcuse-Kubitza vegbien_dest: Changed default $prefix to "", so...
new_terms.csv 38.1 KB 7222 almost 12 years Aaron Marcuse-Kubitza new_terms.csv: Regenerated
run 433 Bytes 9916 over 11 years Aaron Marcuse-Kubitza /run: geoscrub_input/make(): documented runtime...
unmapped_terms.csv 13.1 KB 7201 almost 12 years Aaron Marcuse-Kubitza **/new_terms.csv, **/unmapped_terms.csv: Regene...

Latest revisions

# Date Author Comment
9920 06/19/2013 09:02 AM Aaron Marcuse-Kubitza

inputs/.geoscrub/geoscrub_output/postprocess.sql: coords index: added rest of input columns so this can be used to check the existence of a result by input. added runtime (55 s). use idempotent create_if_not_exists().
9919 06/19/2013 08:17 AM Aaron Marcuse-Kubitza

schemas/vegbien.sql: higher_plant_group_nodes: ferns and allies: added Lycopodiophyta node, as requested by Brad in the conference call (wiki.vegpath.org/2013-06-13_conference_call)
9918 06/19/2013 08:08 AM Aaron Marcuse-Kubitza

bugfix: schemas/vegbien.sql: higher_plant_group_nodes: removed ferns and allies nodes Anthocerotophyta, Marchantiophyta, Bryophyta, which were incorrectly said to be part of this clade in the BIEN2 analytical DB overview (/planning/workflow/validation/BIEN2_Analytical_DB_overview.docx > p. 13 bottom > last ΒΆ). see http://wiki.vegpath.org/2013-06-13_conference_call#fix-higher_plant_group_nodes-mapping .
9917 06/19/2013 07:58 AM Aaron Marcuse-Kubitza

bugfix: /Makefile: postgres-Linux: phpPgAdmin: added steps to configure it for Apache 2.4
9916 06/18/2013 07:49 PM Aaron Marcuse-Kubitza

/run: geoscrub_input/make(): documented runtime (40 s)
9915 06/18/2013 06:22 PM Aaron Marcuse-Kubitza

bin/make_analytical_db: added `/run export_` to make the geoscrub_input CSV export
9914 06/18/2013 06:21 PM Aaron Marcuse-Kubitza

inputs/.TNRS/schema.sql: tnrs_populate_fields(): removed no longer needed casts of *_score to double precision
9913 06/18/2013 06:06 PM Aaron Marcuse-Kubitza

inputs/.TNRS/schema.sql: tnrs: *_score: changed type to double precision because these fields are always floats. this also avoids the need to manually cast them to double precision each time they are used.
9912 06/18/2013 05:55 PM Aaron Marcuse-Kubitza

lib/tnrs.py: HTTP requests: rewrapped lines
9911 06/18/2013 05:53 PM Aaron Marcuse-Kubitza

lib/tnrs.py: updated HTTP requests to match current web app

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