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Name Size Revision Age Author Comment
  _archive 1598 over 12 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  analysis 3076 over 12 years Aaron Marcuse-Kubitza Added top-level analysis dir for range modeling
  backups 9926 over 11 years Aaron Marcuse-Kubitza backups/TNRS.backup.md5: updated
  bin 9925 over 11 years Aaron Marcuse-Kubitza bin/make_analytical_db: use new mk_table() inst...
  config 7801 almost 12 years Aaron Marcuse-Kubitza root Makefile: VegBIEN DB: mk_db: Added command...
  exports 9928 over 11 years Aaron Marcuse-Kubitza added exports/_archive/
  inputs 9927 over 11 years Aaron Marcuse-Kubitza mappings/VegCore-VegBIEN.csv: genus->taxonlabel...
  lib 9912 over 11 years Aaron Marcuse-Kubitza lib/tnrs.py: HTTP requests: rewrapped lines
  mappings 9882 over 11 years Aaron Marcuse-Kubitza mappings/VegCore-VegBIEN.csv: genus->taxonlabel...
  planning 9931 over 11 years Aaron Marcuse-Kubitza schemas/VegBIEN/planning/taxonomy/: moved non-V...
  schemas 9933 over 11 years Aaron Marcuse-Kubitza added schemas/VegBIEN/taxonomy/higherPlantGroup...
  web 9854 over 11 years Aaron Marcuse-Kubitza *{.sh,run}: use simpler .rel() instead of `. "$...
.htaccess 326 Bytes 8771 over 11 years Aaron Marcuse-Kubitza /.htaccess: use canonical URL without symlinks
Makefile 12.5 KB 9917 over 11 years Aaron Marcuse-Kubitza bugfix: /Makefile: postgres-Linux: phpPgAdmin: ...
README.TXT 23.2 KB 9899 over 11 years Aaron Marcuse-Kubitza bugfix: /README.TXT: Full database import: adde...
fix_perms 97 Bytes 7560 almost 12 years Aaron Marcuse-Kubitza Added root fix_perms
map 1001 Bytes 6949 almost 12 years Aaron Marcuse-Kubitza vegbien_dest: Changed default $prefix to "", so...
new_terms.csv 38.1 KB 7222 almost 12 years Aaron Marcuse-Kubitza new_terms.csv: Regenerated
run 433 Bytes 9916 over 11 years Aaron Marcuse-Kubitza /run: geoscrub_input/make(): documented runtime...
unmapped_terms.csv 13.1 KB 7201 almost 12 years Aaron Marcuse-Kubitza **/new_terms.csv, **/unmapped_terms.csv: Regene...

Latest revisions

# Date Author Comment
9933 06/19/2013 03:27 PM Aaron Marcuse-Kubitza

added schemas/VegBIEN/taxonomy/higherPlantGroup.xlsx.src.txt with Brad's description of how the names were chosen
9932 06/19/2013 02:37 PM Aaron Marcuse-Kubitza

added schemas/VegBIEN/taxonomy/higherPlantGroup.xlsx
9931 06/19/2013 01:50 PM Aaron Marcuse-Kubitza

schemas/VegBIEN/planning/taxonomy/: moved non-VegBIEN-specific resources to planning/resources/taxonomy/. this includes Brad's all-important Nomenclature_excerpt.ppt with the Latin taxonomic hierarchy suffixes on slide 5.
9930 06/19/2013 11:02 AM Aaron Marcuse-Kubitza

bugfix: schemas/vegbien.sql: taxon_trait_view: use the TNRS-scrubbed name from ScrubbedTaxon when available
9929 06/19/2013 10:36 AM Aaron Marcuse-Kubitza

schemas/vegbien.sql: split geoscrub_input_view's new-row-only filtering into separate view geoscrub_input_new, so that the full geoscrub_input rows are still available. the reduction in geoscrub_input from eliminating the already-scrubbed rows was only 280,000 (5076500 - 4799173) out of a possible 1.7 million (1707970), so it makes sense to just run geoscrubbing on the full input. (the lower-than-expected reduction is most likely due to rows from pre-refresh data being present in the original geoscrub_output table, which have been replaced by different, post-refresh input rows.)
9928 06/19/2013 10:18 AM Aaron Marcuse-Kubitza

added exports/_archive/
9927 06/19/2013 10:17 AM Aaron Marcuse-Kubitza

mappings/VegCore-VegBIEN.csv: genus->taxonlabel.taxonomicname: use new _filter_genus() (see r9882)
9926 06/19/2013 10:15 AM Aaron Marcuse-Kubitza

backups/TNRS.backup.md5: updated
9925 06/19/2013 09:43 AM Aaron Marcuse-Kubitza

bin/make_analytical_db: use new mk_table() instead of TRUNCATE/INSERT
9924 06/19/2013 09:41 AM Aaron Marcuse-Kubitza

bin/make_analytical_db: added mk_table() and use it in mk_analytical_table()

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