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Name Size Revision Age Author Comment
  _archive 1598 over 12 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  analysis 3076 over 12 years Aaron Marcuse-Kubitza Added top-level analysis dir for range modeling
  backups 9926 over 11 years Aaron Marcuse-Kubitza backups/TNRS.backup.md5: updated
  bin 9925 over 11 years Aaron Marcuse-Kubitza bin/make_analytical_db: use new mk_table() inst...
  config 7801 over 11 years Aaron Marcuse-Kubitza root Makefile: VegBIEN DB: mk_db: Added command...
  exports 9928 over 11 years Aaron Marcuse-Kubitza added exports/_archive/
  inputs 9974 over 11 years Aaron Marcuse-Kubitza inputs/.TNRS/schema.sql: tnrs_populate_fields()...
  lib 9967 over 11 years Aaron Marcuse-Kubitza bugfix: lib/runscripts/table.run: remake_VegBIE...
  mappings 9882 over 11 years Aaron Marcuse-Kubitza mappings/VegCore-VegBIEN.csv: genus->taxonlabel...
  planning 9976 over 11 years Aaron Marcuse-Kubitza added planning/workflow/bien3_architecture/stag...
  schemas 9971 over 11 years Aaron Marcuse-Kubitza schemas/vegbien.sql: re-ran `make schemas/publi...
  web 9854 over 11 years Aaron Marcuse-Kubitza *{.sh,run}: use simpler .rel() instead of `. "$...
.htaccess 326 Bytes 8771 over 11 years Aaron Marcuse-Kubitza /.htaccess: use canonical URL without symlinks
Makefile 12.5 KB 9917 over 11 years Aaron Marcuse-Kubitza bugfix: /Makefile: postgres-Linux: phpPgAdmin: ...
README.TXT 23.3 KB 9970 over 11 years Aaron Marcuse-Kubitza /README.TXT: Full database import: disk space c...
fix_perms 97 Bytes 7560 almost 12 years Aaron Marcuse-Kubitza Added root fix_perms
map 1001 Bytes 6949 almost 12 years Aaron Marcuse-Kubitza vegbien_dest: Changed default $prefix to "", so...
new_terms.csv 38.1 KB 7222 almost 12 years Aaron Marcuse-Kubitza new_terms.csv: Regenerated
run 433 Bytes 9916 over 11 years Aaron Marcuse-Kubitza /run: geoscrub_input/make(): documented runtime...
unmapped_terms.csv 13.1 KB 7201 almost 12 years Aaron Marcuse-Kubitza **/new_terms.csv, **/unmapped_terms.csv: Regene...

Latest revisions

# Date Author Comment
9976 06/20/2013 01:36 PM Aaron Marcuse-Kubitza

added planning/workflow/bien3_architecture/stage_*.png
9975 06/20/2013 12:54 PM Aaron Marcuse-Kubitza

added planning/workflow/bien3_architecture.pptx
9974 06/20/2013 08:20 AM Aaron Marcuse-Kubitza

inputs/.TNRS/schema.sql: tnrs_populate_fields(): when changing this function: UPDATE statement: include TNRS schema since it may not be in the search_path
9973 06/20/2013 08:14 AM Aaron Marcuse-Kubitza

inputs/.TNRS/schema.sql: tnrs_populate_fields(): Is_plant: also consider homonyms using new family_is_homonym, genus_is_homonym (see wiki.vegpath.org/Result_filtering#taxon_is_plant)
9972 06/20/2013 08:03 AM Aaron Marcuse-Kubitza

inputs/.TNRS/schema.sql: tnrs: added Is_homonym derived col (uses IRMNG.family_homonym_epithet, genus_homonym_epithet)
9971 06/20/2013 07:54 AM Aaron Marcuse-Kubitza

schemas/vegbien.sql: re-ran `make schemas/public/reinstall; make schemas/remake` cycle, which apparently changed sort order of statements
9970 06/20/2013 07:11 AM Aaron Marcuse-Kubitza

/README.TXT: Full database import: disk space check: updated minimum (to 300GB) for new import schema size. note that most of the space (166GB) is indexes, and even of the 87GB of data, only 20GB is from GBIF and 15GB from FIA (so most of it is duplication).
9969 06/20/2013 07:07 AM Aaron Marcuse-Kubitza

added inputs/IRMNG/*_homonym_epithet/map.csv, etc. (created by */run)
9968 06/20/2013 07:01 AM Aaron Marcuse-Kubitza

bugfix: inputs/input.Makefile: `%/install %/header.csv: %/create.sql`: in noclobber mode, mark %/header.csv as .PRECIOUS so the existing file won't be deleted if the table already exists (causing an error exit)
9967 06/20/2013 06:54 AM Aaron Marcuse-Kubitza

bugfix: lib/runscripts/table.run: remake_VegBIEN_mappings(): run yes using piped_cmd() so the SIGPIPE doesn't cause an errexit

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