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Name Size Revision Age Author Comment
  _archive 1598 over 12 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  analysis 3076 over 12 years Aaron Marcuse-Kubitza Added top-level analysis dir for range modeling
  backups 9926 over 11 years Aaron Marcuse-Kubitza backups/TNRS.backup.md5: updated
  bin 9925 over 11 years Aaron Marcuse-Kubitza bin/make_analytical_db: use new mk_table() inst...
  config 7801 over 11 years Aaron Marcuse-Kubitza root Makefile: VegBIEN DB: mk_db: Added command...
  exports 9928 over 11 years Aaron Marcuse-Kubitza added exports/_archive/
  inputs 9990 over 11 years Aaron Marcuse-Kubitza inputs/.TNRS/schema.sql: tnrs: documented that ...
  lib 9967 over 11 years Aaron Marcuse-Kubitza bugfix: lib/runscripts/table.run: remake_VegBIE...
  mappings 9882 over 11 years Aaron Marcuse-Kubitza mappings/VegCore-VegBIEN.csv: genus->taxonlabel...
  planning 9978 over 11 years Aaron Marcuse-Kubitza planning/workflow/bien3_architecture.pptx: stag...
  schemas 9991 over 11 years Aaron Marcuse-Kubitza schemas/VegBIEN/taxonomy/higherPlantGroup.xlsx....
  web 9854 over 11 years Aaron Marcuse-Kubitza *{.sh,run}: use simpler .rel() instead of `. "$...
.htaccess 326 Bytes 8771 over 11 years Aaron Marcuse-Kubitza /.htaccess: use canonical URL without symlinks
Makefile 12.5 KB 9917 over 11 years Aaron Marcuse-Kubitza bugfix: /Makefile: postgres-Linux: phpPgAdmin: ...
README.TXT 23.3 KB 9970 over 11 years Aaron Marcuse-Kubitza /README.TXT: Full database import: disk space c...
fix_perms 97 Bytes 7560 almost 12 years Aaron Marcuse-Kubitza Added root fix_perms
map 1001 Bytes 6949 almost 12 years Aaron Marcuse-Kubitza vegbien_dest: Changed default $prefix to "", so...
new_terms.csv 38.1 KB 7222 almost 12 years Aaron Marcuse-Kubitza new_terms.csv: Regenerated
run 433 Bytes 9916 over 11 years Aaron Marcuse-Kubitza /run: geoscrub_input/make(): documented runtime...
unmapped_terms.csv 13.1 KB 7201 almost 12 years Aaron Marcuse-Kubitza **/new_terms.csv, **/unmapped_terms.csv: Regene...

Latest revisions

# Date Author Comment
9991 06/20/2013 05:09 PM Aaron Marcuse-Kubitza

schemas/VegBIEN/taxonomy/higherPlantGroup.xlsx.src.txt: added Brad's comment that there are some holes in the Embryophyte subclasses list, and we need to validate it
9990 06/20/2013 04:49 PM Aaron Marcuse-Kubitza

inputs/.TNRS/schema.sql: tnrs: documented that when changing this table's schema, you must also make the same changes on vegbiendev. included sample util.set_col_types() call with runtime (4 min).
9989 06/20/2013 03:58 PM Aaron Marcuse-Kubitza

inputs/.TNRS/schema.sql: tnrs_populate_fields(): updated runtime (16 min)
9988 06/20/2013 03:32 PM Aaron Marcuse-Kubitza

bugfix: inputs/.TNRS/schema.sql: tnrs_populate_fields(): need to schema-qualify invoked functions
9987 06/20/2013 03:29 PM Aaron Marcuse-Kubitza

bugfix: inputs/.TNRS/schema.sql: tnrs_populate_fields(): Is_homonym: use the *_is_homonym flag for whichever of genus or family (in that order) is NOT NULL, rather than horizontal-ORing potentially NULL values together
9986 06/20/2013 03:22 PM Aaron Marcuse-Kubitza

bugfix: inputs/.TNRS/schema.sql: family_is_homonym(), genus_is_homonym(): need to return NULL instead of false when input family/genus is NULL. EXISTS does not support this, so STRICT is used to provide this functionality automatically.
9985 06/20/2013 03:19 PM Aaron Marcuse-Kubitza

inputs/.TNRS/schema.sql: added family_is_homonym(), genus_is_homonym() and use them in tnrs_populate_fields()
9984 06/20/2013 03:15 PM Aaron Marcuse-Kubitza

inputs/.TNRS/schema.sql: score_ok(): changed to IMMUTABLE and STRICT
9983 06/20/2013 03:14 PM Aaron Marcuse-Kubitza

inputs/.TNRS/schema.sql: tnrs_populate_fields(): updated runtime (16 min)
9982 06/20/2013 02:41 PM Aaron Marcuse-Kubitza

inputs/.TNRS/schema.sql: tnrs_populate_fields(): never_homonym: use Author_score threshold to exclude matches that are too fuzzy to confirm the presence of a plant name author

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