Updates to MOD06 Climatology Script and MDO06 processing to isolate the effects of the MOD35 -landcover bias

Adjusted handling of cloud flag to 'hopefully' improve missing data problem in MOD06 climatology

restructured MOD06 processing routine to eliminate functions for more transparent (linear) processing. Also updated to run on either pleiades or litoria

Merging with Pleiades copy

Merging with Pleiades copies

Adding Climatology script to process daily files to climatologies

Identified problem in handling of missing values of MOD06 product. In some areas limiting quality control to the highest quality results in ~90% NAs.

MOD06 processing running successfully using Pleiades environment set up by Andrew Michaelis at NASA.

Script now runs except ncap2 is missing from the nco module

Currently submission hangs using mqueue when loading rgdal library. Will attempt to add a separate submission script that first loads modules before running Rscript on the slaves

MOD06_L2 now running properly but Rmpi is not running due to (probably) incompatability between Rmpi and the version of sgi-mpi available on Pleiades

Updated script to accurately set paths for HEG tool to facilitate parallel processing of gridding procedure using swtif. Multicore package is used to parallelize which limits processing to a single node. Next step is to explore use of foreach package to allow multiple nodes

Updated MOD06 process to output NetCDF files instead of geotif for faster post-processing

Resolved problem with temporary directory for Rscript call.

Script is successfully running and producing the summary files, though the output looks strange. Maybe a problem with sinusoidal output of HEG? Use Pleiades.R to drive the submission and MOD06_L2_process as the processing script