Merging with Pleiades copies
Merge branch 'aw/precip' of code.nceas.ucsb.edu:environmental-layers into aw/precip
Identified problem in handling of missing values of MOD06 product. In some areas limiting quality control to the highest quality results in ~90% NAs.
initial script to handle modified netcdf files from Pleiades.R script
Merging with remote branch"
Updated summary script to work with netcdf output files
MOD06 processing running successfully using Pleiades environment set up by Andrew Michaelis at NASA.
Script now runs except ncap2 is missing from the nco module
Currently submission hangs using mqueue when loading rgdal library. Will attempt to add a separate submission script that first loads modules before running Rscript on the slaves
MOD06_L2 now running properly but Rmpi is not running due to (probably) incompatability between Rmpi and the version of sgi-mpi available on Pleiades
Updated script to accurately set paths for HEG tool to facilitate parallel processing of gridding procedure using swtif. Multicore package is used to parallelize which limits processing to a single node. Next step is to explore use of foreach package to allow multiple nodes
Updated MOD06 process to output NetCDF files instead of geotif for faster post-processing
Resolved problem with temporary directory for Rscript call.
Script is successfully running and producing the summary files, though the output looks strange. Maybe a problem with sinusoidal output of HEG? Use Pleiades.R to drive the submission and MOD06_L2_process as the processing script
Successfully running MOD06 processing on Pleiades as an array job (though submissions are limited to < 365 jobs so will have to find another way to submit them)
Started working with script to process MOD05 on NASA's Pleiades
Updates to run 12 months of mean daily precipitation using a variety of models. Includes using gamm() to incorporate spatial effects in addition to the smooth parameters. Not all clean and cozy yet, uploading as a work-in-progress...
Further updates to interpolation procedures including:
1) bugfix in MOD06_L2_data_compile. Root access is needed to run swtif in its current directory (bad design!).2) Switched to UTM output from swtif (from sinusoidal) becuase it looked like gdal was struggling with integerized sinusoidal...
Added initial version of LST_Landcover exploration (not finished). Also moved prior version of interpolation procedure (bayesian krig) into repository.
added processing for 'very cloudy days'
Added PRISM comparison to MOD06_summary and added script to calculate 'back-of-the-envelope' estimates of total daily climate layer sizes
Updated MOD06 compile script to process the tiles in parallel using GRASS. This brings processing time for 10 year archive for oregon from 48 hours to ~2 hours on 24 cores. Also added several exploratory analysis to the data_summary script.
Added cloud flag to outputs
First 10-year processing of daily mean tifs
MOD06 processing runs well in sequence, but not parallel
Adding some MOD06 (cloud product) processing routines. Still a work in progress
Initial commit
cleaned up file permissions
added in various previously uncommitted scripts
