Revision 52ae84b1
Added by Adam Wilson over 11 years ago
| climate/procedures/Pleiades_MOD35.R | ||
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proclist=expand.grid(date=alldates,tile=tiles) |
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proclist$year=substr(proclist$date,1,4) |
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## identify tile-dates with no available swaths |
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## identify tile-dates with no available swaths
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avail=unique(cbind.data.frame(tile=fs$tile,date=fs$dateid)[fs$exists, ]) |
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proclist$avail=paste(proclist$tile,proclist$date,sep="_")%in%paste(avail$tile,avail$date,sep="_") |
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| ... | ... | |
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### qsub script |
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cat(paste("
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#PBS -S /bin/bash |
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##PBS -l select=1:ncpus=8:mpiprocs=8
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#PBS -l select=100:ncpus=8:mpiprocs=8 |
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#PBS -l walltime=8:00:00 |
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##PBS -l walltime=2:00:00
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#PBS -l select=20:ncpus=8:mpiprocs=8
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##PBS -l select=100:ncpus=8:mpiprocs=8
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##PBS -l walltime=8:00:00
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#PBS -l walltime=4:00:00
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#PBS -j n |
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#PBS -m be |
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#PBS -N mod35 |
| ... | ... | |
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##PBS -q devel |
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#PBS -V |
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CORES=800 |
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#CORES=160
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#CORES=800
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CORES=160 |
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HDIR=/u/armichae/pr/ |
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source $HDIR/etc/environ.sh |
| climate/procedures/UpdateCovar.sh | ||
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## simple script to upload data from various places such as acrobates (YALE) and atlas (NCEAS) to pleiades for interpolation project |
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## Set working directory |
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cd /nobackupp1/awilso10/interp/covar/ |
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## get distance to coast |
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wget http://oceancolor.gsfc.nasa.gov/DOCS/DistFromCoast/GMT_intermediate_coast_distance_01d.zip |
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unzip GMT_intermediate_coast_distance_01d.zip |
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## topographical variables |
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mkdir topo |
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scp adamw@acrobates.eeb.yale.edu:/data2/dem_variables/altitude/median/altitude_median.tif topo/ |
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scp adamw@acrobates.eeb.yale.edu:/data2/dem_variables/slope/median/slope_median.tif topo/ |
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scp adamw@acrobates.eeb.yale.edu:/data2/dem_variables/aspect/median/aspect_median_*.tif topo |
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## consensus landcover |
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mkdir landcover |
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scp adamw@acrobates.eeb.yale.edu:/data/jetzlab/Data/environ/global/landcover/Consensus_new/Layers/*.tif landcover/ |
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Also available in: Unified diff
Adding script to upload covariate data to Pleiades