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root/climate/extra/Interpolation_mindmap.mm @ 5891fba5

1 5891fba5 Adam M. Wilson 
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<!-- To view this file, download free mind mapping software FreeMind from http://freemind.sourceforge.net -->
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<richcontent TYPE="NODE"><html>
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  <head>
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  </head>
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  <body>
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    <p>
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      <font color="#ff0006" size="5"><b>Climate processing</b></font>
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    </p>
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  </body>
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</html></richcontent>
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<node CREATED="1337693478939" FOLDED="true" ID="ID_976653303" MODIFIED="1337805747721" POSITION="left" TEXT="Download/preprocess data">
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<richcontent TYPE="NODE"><html>
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  <head>
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  </head>
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  <body>
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    <p>
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      LST (MOD11A1) &#160;<font color="#149900">(JR&amp;BP)</font>
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    </p>
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  </body>
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</html></richcontent>
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<node CREATED="1337693771408" FOLDED="true" ID="ID_1881714255" LINK="https://projects.nceas.ucsb.edu/nceas/projects/environment-and-orga/repository/revisions/01b3830e935fd53889c078715af701506dc1bc97/entry/climate/extra/aggregate-daily-lst.py" MODIFIED="1337805747713">
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<richcontent TYPE="NODE"><html>
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  <head>
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  </head>
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  <body>
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    <p>
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      aggregate-daily-lst.py
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    </p>
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  </body>
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</html></richcontent>
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<node CREATED="1337696030080" ID="ID_345604069" MODIFIED="1337696035945" TEXT="Download tiles"/>
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<node CREATED="1337696018352" FOLDED="true" ID="ID_883428808" MODIFIED="1337805747712" TEXT="QC flag handling, keep the following:">
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<node CREATED="1337696078989" ID="ID_1653269019" MODIFIED="1337696132242" TEXT="First two QA bits &#x201c;00&#x201d;"/>
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<node CREATED="1337696145379" ID="ID_1126403858" MODIFIED="1337696153065" TEXT="First two &#x201c;01&#x201d; and second two &#x201c;00&#x201d;"/>
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<node CREATED="1337696166656" ID="ID_178027117" MODIFIED="1337696188024" TEXT="Explore &quot;LST error flags&quot; and &quot;clear-sky coverage&quot;"/>
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</node>
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<node CREATED="1337696056429" FOLDED="true" ID="ID_1676442262" MODIFIED="1337805747712" TEXT="Calculate monthly climatologies">
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<node CREATED="1337696213956" ID="ID_284684278" MODIFIED="1337696221719" TEXT="LST day for tmax"/>
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<node CREATED="1337696223377" ID="ID_1571291484" MODIFIED="1337696227030" TEXT="LST night for tmin"/>
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</node>
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</node>
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</node>
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<node CREATED="1337693745220" FOLDED="true" ID="ID_884884556" MODIFIED="1337805747716">
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<richcontent TYPE="NODE"><html>
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  <head>
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  </head>
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  <body>
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    <p>
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      Cloud Product (MOD06_L2) <font color="#019c01">(AW)</font>
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    </p>
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  </body>
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</html></richcontent>
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<node CREATED="1337694612149" FOLDED="true" ID="ID_1573194506" MODIFIED="1337805747715" TEXT="aggregate-swath-mod06.r">
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<node CREATED="1337695522534" ID="ID_560068855" MODIFIED="1337695635196" TEXT="Download swath data (not easy due to untiled format)"/>
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<node CREATED="1337695636466" ID="ID_567730294" MODIFIED="1337695756542" TEXT="swath-&gt;grid"/>
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<node CREATED="1337695762202" ID="ID_1779987171" MODIFIED="1337695768853" TEXT="QC flag handling"/>
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<node CREATED="1337695773345" ID="ID_454418278" MODIFIED="1337695798667" TEXT="monthly summaries"/>
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</node>
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</node>
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<node CREATED="1337693858549" FOLDED="true" ID="ID_132329517" MODIFIED="1337805747717" TEXT="Landcover">
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<node CREATED="1337694673911" FOLDED="true" ID="ID_340925422" MODIFIED="1337805747717" TEXT="Jetz consensus product">
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<icon BUILTIN="flag-green"/>
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<node CREATED="1337713232568" ID="ID_1681449624" MODIFIED="1337713428348">
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<richcontent TYPE="NODE"><html>
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  <head>
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  </head>
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  <body>
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    <p>
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      Landcover 1 &amp; 3 (grass &amp; forest)<font color="#028f0c">&#160;(BP)</font>
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    </p>
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  </body>
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</html></richcontent>
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</node>
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<node CREATED="1337713279548" ID="ID_1698377334" MODIFIED="1337713291975" TEXT="Add Barren, Urban, Agriculture"/>
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<node CREATED="1337713299696" ID="ID_1135739112" MODIFIED="1337713346632" TEXT="Add spatial aggregation around points (2km, 4km?)"/>
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</node>
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</node>
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<node CREATED="1337713444927" FOLDED="true" ID="ID_1699470382" MODIFIED="1337805747721" TEXT="Met Station Data">
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<node CREATED="1337693880467" FOLDED="true" ID="ID_303589508" MODIFIED="1337805747719" TEXT="Station Data (GHCN)">
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<node CREATED="1337694760649" FOLDED="true" ID="ID_980361932" LINK="https://projects.nceas.ucsb.edu/nceas/projects/environment-and-orga/repository/revisions/c7235eaebbe073c3d32c29e1fbd340bba637c7df/entry/climate/extra/ghcn-to-psql.R" MODIFIED="1337805747718">
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<richcontent TYPE="NODE"><html>
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  <head>
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  </head>
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  <body>
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    <p>
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      ghcn-to-psql.R <font color="#06a401">(JR)</font>
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    </p>
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  </body>
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</html></richcontent>
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<node CREATED="1337695211849" ID="ID_1420445695" MODIFIED="1337695328753" TEXT="Download .dly files"/>
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<node CREATED="1337695229751" ID="ID_1081105282" MODIFIED="1337695388785" TEXT="Convert to tabular format">
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<icon BUILTIN="flag-green"/>
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</node>
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<node CREATED="1337695241037" ID="ID_221714299" MODIFIED="1337695390305" TEXT="insert into database">
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<icon BUILTIN="flag-green"/>
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</node>
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</node>
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<node CREATED="1337695866690" ID="ID_82660518" MODIFIED="1337695981028" TEXT="Monthly GHCN: construct from daily or use Monthly GHCN product"/>
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</node>
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<node CREATED="1337693971567" FOLDED="true" ID="ID_1112385171" MODIFIED="1337805747720" TEXT="Station Data (other)">
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<node CREATED="1337694798883" ID="ID_1203773837" MODIFIED="1337695860669" TEXT="If we pursue anomaly approach, we may want to use WMO climatologies"/>
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<node CREATED="1337722524115" FOLDED="true" ID="ID_277739818" LINK="https://docs.google.com/spreadsheet/ccc?key=0Amdov1dAmji5dEtMRUM1MUZmMUZ4YlRWQzZzLV9LNlE" MODIFIED="1337805747720" TEXT="Literature review of (available?) data">
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<node CREATED="1337722559077" ID="ID_909532490" MODIFIED="1337722564374" TEXT="WorldClim data"/>
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<node CREATED="1337696712398" ID="ID_1489094293" MODIFIED="1337699833653">
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<richcontent TYPE="NODE"><html>
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  <head>
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  </head>
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  <body>
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    <p>
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      South African <font color="#028716">(AW)</font>
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    </p>
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  </body>
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</html></richcontent>
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<icon BUILTIN="male1"/>
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</node>
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<node CREATED="1337696721882" ID="ID_371829888" MODIFIED="1337696856847" TEXT="Neotropics?"/>
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<node CREATED="1337696736013" ID="ID_941927867" MODIFIED="1337699849677">
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<richcontent TYPE="NODE"><html>
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  <head>
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  </head>
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  <body>
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    <p>
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      Japan? <font color="#028b08">(AW)</font>
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    </p>
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  </body>
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</html></richcontent>
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<icon BUILTIN="male1"/>
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</node>
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</node>
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</node>
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<node CREATED="1337694881142" FOLDED="true" ID="ID_424054784" MODIFIED="1337805747720">
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<richcontent TYPE="NODE"><html>
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  <head>
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  </head>
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  <body>
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    <p>
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      Quality Control <font color="#068402">(AW &amp; BP)</font>
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    </p>
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  </body>
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</html></richcontent>
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<node CREATED="1337695172158" ID="ID_817228390" MODIFIED="1337695177796" TEXT="Update database with QC flags"/>
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<node CREATED="1337694928723" ID="ID_1036738506" MODIFIED="1337695190937" TEXT="outliers, runs, etc"/>
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<node CREATED="1337695400785" ID="ID_679688223" MODIFIED="1337695412462" TEXT="Adam has example script"/>
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<node CREATED="1337723193346" ID="ID_532427724" MODIFIED="1337723215371" TEXT="Station Selection (WorldClim style priorities)"/>
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</node>
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<node CREATED="1337699923359" ID="ID_1034401963" MODIFIED="1337699950943" TEXT="Spatial Query (submit polygon and date to get table of observations)"/>
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</node>
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<node CREATED="1337713572766" FOLDED="true" ID="ID_1211719545" MODIFIED="1337805747721" TEXT="Other data">
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<node CREATED="1337713577167" ID="ID_1584845754" MODIFIED="1337713582360" TEXT="NCEP Reanalysis?"/>
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</node>
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</node>
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<node CREATED="1337696640713" FOLDED="true" ID="ID_1410709754" MODIFIED="1337805747721" POSITION="left" TEXT="Regions">
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<node CREATED="1337697035100" ID="ID_439992455" MODIFIED="1337697036524" TEXT="Oregon"/>
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<node CREATED="1337697039107" ID="ID_538311410" MODIFIED="1337697041013" TEXT="South Africa"/>
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<node CREATED="1337697050599" ID="ID_1880530792" MODIFIED="1337697053267" TEXT="East Africa"/>
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</node>
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<node CREATED="1337694217407" FOLDED="true" ID="ID_1692790642" MODIFIED="1337805747722" POSITION="left" TEXT="Subset">
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<icon BUILTIN="full-3"/>
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<node CREATED="1337694227599" FOLDED="true" ID="ID_907402330" MODIFIED="1337805747721" TEXT="Spatial">
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<node CREATED="1337696593506" FOLDED="true" ID="ID_219701496" MODIFIED="1337805747721" TEXT="Spatial Tiling">
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<node CREATED="1337696931165" ID="ID_255962886" MODIFIED="1337696971387" TEXT="Tiling depends on methods (will we need data from surrounding tiles or just stations)?"/>
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<node CREATED="1337694275313" ID="ID_854736297" MODIFIED="1337696994157" TEXT="Use stations from outside region to reduce edge effects"/>
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</node>
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</node>
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<node CREATED="1337694234192" FOLDED="true" ID="ID_1680696121" MODIFIED="1337805747722" TEXT="Temporal">
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<node CREATED="1337697075948" ID="ID_1400143470" MODIFIED="1337697081425" TEXT="Subset to 1970-2010"/>
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<node CREATED="1337697084530" ID="ID_907061196" MODIFIED="1337697092004" TEXT="Day-by-day interpolations"/>
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</node>
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<node CREATED="1337694241728" FOLDED="true" ID="ID_644499787" MODIFIED="1337805747722" TEXT="Reproject">
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<node CREATED="1337694248230" ID="ID_867337175" MODIFIED="1337694263148" TEXT="Use local projection (UTM?) for interpolation?"/>
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<node CREATED="1337721280170" ID="ID_1156119627" MODIFIED="1337721292456" TEXT="Fit in UTM and predict into translated cell centroids?"/>
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</node>
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<node CREATED="1337701235770" FOLDED="true" ID="ID_1775941968" MODIFIED="1337805747722" TEXT="Prepare Design matrix for modelling">
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<node CREATED="1337701279162" ID="ID_1661261436" MODIFIED="1337764353373" TEXT="One day"/>
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<node CREATED="1337701328594" ID="ID_274392765" MODIFIED="1337701337057" TEXT="One variable (tmax, tmin, or ppt)"/>
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<node CREATED="1337701338233" ID="ID_241629300" MODIFIED="1337701345167" TEXT="One tile"/>
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</node>
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</node>
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<node CREATED="1337697213185" FOLDED="true" ID="ID_15031549" MODIFIED="1337805747727" POSITION="right" TEXT="Interpolation">
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<icon BUILTIN="full-4"/>
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<node CREATED="1337697235796" FOLDED="true" ID="ID_1692618034" MODIFIED="1337805747722" TEXT="Temporal resolution (1970-2010)">
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<node CREATED="1337697244020" ID="ID_1640475194" MODIFIED="1337697245792" TEXT="Daily"/>
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<node CREATED="1337697246995" ID="ID_1369257827" MODIFIED="1337697249860" TEXT="Monthly"/>
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<node CREATED="1337697251140" ID="ID_577926600" MODIFIED="1337697256708" TEXT="Monthly Climatologies"/>
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</node>
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<node CREATED="1337697226173" FOLDED="true" ID="ID_1296935309" MODIFIED="1337805747725" TEXT="Methods">
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<node CREATED="1337701916996" FOLDED="true" ID="ID_880392640" MODIFIED="1337805747722" TEXT="Response variables">
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<node CREATED="1337701929541" ID="ID_1427601938" MODIFIED="1337701953760">
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<richcontent TYPE="NODE"><html>
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  <head>
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  </head>
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  <body>
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    <p>
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      Temperature (tmax &amp; tmin)<font color="#017708">&#160;(BP)</font>
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    </p>
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  </body>
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</html></richcontent>
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</node>
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<node CREATED="1337701957896" ID="ID_1619372413" MODIFIED="1337702014751">
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<richcontent TYPE="NODE"><html>
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  <head>
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  </head>
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  <body>
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    <p>
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      Precipitation <font color="#01830b">(AW)</font>
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    </p>
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  </body>
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</html></richcontent>
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</node>
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</node>
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<node CREATED="1337697677834" FOLDED="true" ID="ID_599360131" MODIFIED="1337805747723" TEXT="Input variables">
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<node CREATED="1337697688482" ID="ID_1871931734" MODIFIED="1337697695668" TEXT="Latitude"/>
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<node CREATED="1337697691388" ID="ID_1153921404" MODIFIED="1337697698251" TEXT="Longitude"/>
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<node CREATED="1337697699190" ID="ID_1767873058" MODIFIED="1337697703651" TEXT="Distance to Ocean"/>
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<node CREATED="1337697704782" ID="ID_1688387348" MODIFIED="1337697714221" TEXT="Aspect (eastness &amp; northness)"/>
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<node CREATED="1337697715634" ID="ID_995593396" MODIFIED="1337697724360" TEXT="Elevation"/>
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<node CREATED="1337697725310" ID="ID_766953470" MODIFIED="1337697785175" TEXT="Land Surface Temperature (LST)"/>
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<node CREATED="1337697795196" ID="ID_148550770" MODIFIED="1337697823186" TEXT="Cloud product?"/>
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<node CREATED="1337697899207" FOLDED="true" ID="ID_1471302870" MODIFIED="1337805747723" TEXT="Land cover">
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<node CREATED="1337697904435" ID="ID_128992060" MODIFIED="1337697910821" TEXT="interactions with LST?"/>
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</node>
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<node CREATED="1337714249015" FOLDED="true" ID="ID_1134140871" MODIFIED="1337805747723" TEXT="Others?">
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<node CREATED="1337714255701" ID="ID_403437508" MODIFIED="1337714272535" TEXT="other terrain variables?"/>
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<node CREATED="1337714285640" ID="ID_1934533760" MODIFIED="1337714302998" TEXT="coarse gridded weather (NCEP reanalysis)"/>
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</node>
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</node>
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<node CREATED="1337697653796" FOLDED="true" ID="ID_1967178138" MODIFIED="1337805747724" TEXT="&apos;Raw&apos; values">
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<node CREATED="1337697269453" FOLDED="true" ID="ID_1006915660" MODIFIED="1337805747723" TEXT="GAM">
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<node CREATED="1337701358195" FOLDED="true" ID="ID_1552803013" MODIFIED="1337805747723" TEXT="Input variables">
246 
<node CREATED="1337701442885" ID="ID_1963630966" MODIFIED="1337701451623" TEXT="Daily vs. monthly mean LST"/>
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</node>
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<node CREATED="1337701412448" FOLDED="true" ID="ID_1453574000" MODIFIED="1337805747723" TEXT="Interactions">
249 
<node CREATED="1337701456001" ID="ID_1273197967" MODIFIED="1337701465854" TEXT="LST &amp; Landcover"/>
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<node CREATED="1337701469632" ID="ID_651464033" MODIFIED="1337701472569" TEXT="aspect"/>
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<node CREATED="1337701494058" ID="ID_1659159243" MODIFIED="1337701499886" TEXT="Latitude/Longitude"/>
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</node>
253 
<node CREATED="1337714980501" ID="ID_574328154" MODIFIED="1337714992688" TEXT="Spatial structure in error term?"/>
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</node>
255 
<node CREATED="1337697278338" FOLDED="true" ID="ID_1725153104" MODIFIED="1337805747724" TEXT="Co-kriging">
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<node CREATED="1337701520770" FOLDED="true" ID="ID_1408791547" MODIFIED="1337805747724" TEXT="Variogram">
257 
<node CREATED="1337701525586" ID="ID_1732269465" MODIFIED="1337701534160" TEXT="Fit with LST data"/>
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<node CREATED="1337701535206" ID="ID_1503144865" MODIFIED="1337701541936" TEXT="Fit with station observations"/>
259 
<node CREATED="1337701544595" ID="ID_1962531134" MODIFIED="1337701564932" TEXT="explore various variograms (automap)"/>
260 
<node CREATED="1337701569795" ID="ID_400352692" MODIFIED="1337701574613" TEXT="Bayesian?"/>
261 
</node>
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</node>
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<node CREATED="1337697281075" FOLDED="true" ID="ID_1837699933" MODIFIED="1337805747724" TEXT="GWR">
264 
<node CREATED="1337701637242" ID="ID_912490046" MODIFIED="1337701682376" TEXT="same as above"/>
265 
<node CREATED="1337701694620" ID="ID_71289629" MODIFIED="1337701711362" TEXT="range setting set (spgwr package)"/>
266 
<node CREATED="1337701715058" FOLDED="true" ID="ID_424191977" MODIFIED="1337805747724" TEXT="Validation">
267 
<node CREATED="1337701719851" ID="ID_1543877575" MODIFIED="1337701736306" TEXT="Range based on training dataset"/>
268 
<node CREATED="1337701738472" ID="ID_1835145782" MODIFIED="1337701775835" TEXT="Krig slopes based on training data and use for predictions"/>
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</node>
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</node>
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</node>
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<node CREATED="1337697646348" FOLDED="true" ID="ID_1127846820" MODIFIED="1337805747724" TEXT="Anomaly Approach">
273 
<node CREATED="1337697269453" ID="ID_1974814189" MODIFIED="1337697277159" TEXT="GAM"/>
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<node CREATED="1337697278338" ID="ID_1114918308" MODIFIED="1337722375384" TEXT="cokriging"/>
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<node CREATED="1337697281075" ID="ID_1403425851" MODIFIED="1337697282244" TEXT="GWR"/>
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</node>
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<node CREATED="1337697825505" ID="ID_1235804707" MODIFIED="1337697854510" TEXT="Backup method (for times/locations that primary method fails)"/>
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</node>
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<node CREATED="1337700453400" FOLDED="true" ID="ID_1764057631" MODIFIED="1337805747727" TEXT="Assessment">
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<node CREATED="1337697587352" FOLDED="true" ID="ID_1111409905" MODIFIED="1337805747725">
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<richcontent TYPE="NODE"><html>
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  <head>
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  </head>
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  <body>
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    <p>
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      Literature Review: Compare to other interpolation studies <font color="#01a00a">(BP &amp; AW)</font>
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    </p>
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  </body>
290 
</html></richcontent>
291 
<node CREATED="1337702592191" ID="ID_1109082387" MODIFIED="1337702597850" TEXT="Mendely shared library"/>
292 
<node CREATED="1337722297901" ID="ID_702952208" MODIFIED="1337722301750" TEXT="Table of methods"/>
293 
<node CREATED="1337722303924" ID="ID_437946867" MODIFIED="1337722313586" TEXT="Explanation of similarities and differences"/>
294 
<node CREATED="1337722320078" ID="ID_1695809130" MODIFIED="1337722338669" TEXT="GAM vs Spline vs ANUSPLIN"/>
295 
</node>
296 
<node CREATED="1337697289184" FOLDED="true" ID="ID_800767423" MODIFIED="1337805747726" TEXT="Validation (holdout stations)">
297 
<node CREATED="1337721537535" FOLDED="true" ID="ID_1440764691" MODIFIED="1337805747725" TEXT="metrics">
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<node CREATED="1337697291945" ID="ID_1279187065" MODIFIED="1337697296054" TEXT="RMSE"/>
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<node CREATED="1337697297260" ID="ID_676994378" MODIFIED="1337697298703" TEXT="MAE"/>
300 
<node CREATED="1337697300612" ID="ID_1888790124" MODIFIED="1337697344604" TEXT="Bias (mean error)"/>
301 
<node CREATED="1337697381000" ID="ID_835799389" MODIFIED="1337697385278" TEXT="R^2"/>
302 
<node CREATED="1337700496780" FOLDED="true" ID="ID_213135038" MODIFIED="1337805747725" TEXT="Precipitation">
303 
<node CREATED="1337700502834" ID="ID_316342827" MODIFIED="1337700541140" TEXT="sensitivity/specificity"/>
304 
<node CREATED="1337700543098" ID="ID_1199492789" MODIFIED="1337700643961" TEXT="Relative error rather than absolute"/>
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</node>
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</node>
307 
<node CREATED="1337721548098" FOLDED="true" ID="ID_1213593936" MODIFIED="1337805747725" TEXT="Comparisons">
308 
<node CREATED="1337721587292" ID="ID_1004288967" MODIFIED="1337721598950" TEXT="spatiotemporal distribution of metrics"/>
309 
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