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Revision 5891fba5

Added by Adam M. Wilson over 12 years ago

  • ID 5891fba546da9a4d11ca0dc944810b566d6c29e3

Add initial version of the 'mind map' for the interpolation project. This file contains an outline of the various stages of the project and links back to issues and code in the blessed repository.
Created during Benoit's visit to Yale May 21-22.

View differences:

climate/extra/Interpolation_mindmap.mm
1
<map version="1.0.0">
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<!-- To view this file, download free mind mapping software FreeMind from http://freemind.sourceforge.net -->
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<node CREATED="1337693448049" ID="ID_499007520" MODIFIED="1337805747728">
4
<richcontent TYPE="NODE"><html>
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  <head>
6
    
7
  </head>
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  <body>
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    <p>
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      <font color="#ff0006" size="5"><b>Climate processing</b></font>
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    </p>
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  </body>
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</html></richcontent>
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<node CREATED="1337693478939" FOLDED="true" ID="ID_976653303" MODIFIED="1337805747721" POSITION="left" TEXT="Download/preprocess data">
15
<icon BUILTIN="full-1"/>
16
<node CREATED="1337693492611" FOLDED="true" ID="ID_1622023543" MODIFIED="1337805747714">
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<richcontent TYPE="NODE"><html>
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  <head>
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  </head>
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  <body>
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    <p>
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      LST (MOD11A1) &#160;<font color="#149900">(JR&amp;BP)</font>
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    </p>
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  </body>
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</html></richcontent>
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<node CREATED="1337693771408" FOLDED="true" ID="ID_1881714255" LINK="https://projects.nceas.ucsb.edu/nceas/projects/environment-and-orga/repository/revisions/01b3830e935fd53889c078715af701506dc1bc97/entry/climate/extra/aggregate-daily-lst.py" MODIFIED="1337805747713">
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<richcontent TYPE="NODE"><html>
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  <head>
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  </head>
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  <body>
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    <p>
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      aggregate-daily-lst.py
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    </p>
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  </body>
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</html></richcontent>
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<node CREATED="1337696030080" ID="ID_345604069" MODIFIED="1337696035945" TEXT="Download tiles"/>
39
<node CREATED="1337696018352" FOLDED="true" ID="ID_883428808" MODIFIED="1337805747712" TEXT="QC flag handling, keep the following:">
40
<node CREATED="1337696078989" ID="ID_1653269019" MODIFIED="1337696132242" TEXT="First two QA bits &#x201c;00&#x201d;"/>
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<node CREATED="1337696145379" ID="ID_1126403858" MODIFIED="1337696153065" TEXT="First two &#x201c;01&#x201d; and second two &#x201c;00&#x201d;"/>
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<node CREATED="1337696166656" ID="ID_178027117" MODIFIED="1337696188024" TEXT="Explore &quot;LST error flags&quot; and &quot;clear-sky coverage&quot;"/>
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</node>
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<node CREATED="1337696056429" FOLDED="true" ID="ID_1676442262" MODIFIED="1337805747712" TEXT="Calculate monthly climatologies">
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<node CREATED="1337696213956" ID="ID_284684278" MODIFIED="1337696221719" TEXT="LST day for tmax"/>
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<node CREATED="1337696223377" ID="ID_1571291484" MODIFIED="1337696227030" TEXT="LST night for tmin"/>
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</node>
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</node>
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</node>
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<node CREATED="1337693745220" FOLDED="true" ID="ID_884884556" MODIFIED="1337805747716">
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<richcontent TYPE="NODE"><html>
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  <head>
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  </head>
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  <body>
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    <p>
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      Cloud Product (MOD06_L2) <font color="#019c01">(AW)</font>
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    </p>
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  </body>
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</html></richcontent>
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<node CREATED="1337694612149" FOLDED="true" ID="ID_1573194506" MODIFIED="1337805747715" TEXT="aggregate-swath-mod06.r">
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<node CREATED="1337695522534" ID="ID_560068855" MODIFIED="1337695635196" TEXT="Download swath data (not easy due to untiled format)"/>
63
<node CREATED="1337695636466" ID="ID_567730294" MODIFIED="1337695756542" TEXT="swath-&gt;grid"/>
64
<node CREATED="1337695762202" ID="ID_1779987171" MODIFIED="1337695768853" TEXT="QC flag handling"/>
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<node CREATED="1337695773345" ID="ID_454418278" MODIFIED="1337695798667" TEXT="monthly summaries"/>
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</node>
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</node>
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<node CREATED="1337693858549" FOLDED="true" ID="ID_132329517" MODIFIED="1337805747717" TEXT="Landcover">
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<node CREATED="1337694673911" FOLDED="true" ID="ID_340925422" MODIFIED="1337805747717" TEXT="Jetz consensus product">
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<icon BUILTIN="flag-green"/>
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<node CREATED="1337713232568" ID="ID_1681449624" MODIFIED="1337713428348">
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<richcontent TYPE="NODE"><html>
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  <head>
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  </head>
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  <body>
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    <p>
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      Landcover 1 &amp; 3 (grass &amp; forest)<font color="#028f0c">&#160;(BP)</font>
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    </p>
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  </body>
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</html></richcontent>
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</node>
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<node CREATED="1337713279548" ID="ID_1698377334" MODIFIED="1337713291975" TEXT="Add Barren, Urban, Agriculture"/>
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<node CREATED="1337713299696" ID="ID_1135739112" MODIFIED="1337713346632" TEXT="Add spatial aggregation around points (2km, 4km?)"/>
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</node>
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</node>
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<node CREATED="1337713444927" FOLDED="true" ID="ID_1699470382" MODIFIED="1337805747721" TEXT="Met Station Data">
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<node CREATED="1337693880467" FOLDED="true" ID="ID_303589508" MODIFIED="1337805747719" TEXT="Station Data (GHCN)">
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<node CREATED="1337694760649" FOLDED="true" ID="ID_980361932" LINK="https://projects.nceas.ucsb.edu/nceas/projects/environment-and-orga/repository/revisions/c7235eaebbe073c3d32c29e1fbd340bba637c7df/entry/climate/extra/ghcn-to-psql.R" MODIFIED="1337805747718">
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<richcontent TYPE="NODE"><html>
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  <head>
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  </head>
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  <body>
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    <p>
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      ghcn-to-psql.R <font color="#06a401">(JR)</font>
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    </p>
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  </body>
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</html></richcontent>
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<node CREATED="1337695211849" ID="ID_1420445695" MODIFIED="1337695328753" TEXT="Download .dly files"/>
101
<node CREATED="1337695229751" ID="ID_1081105282" MODIFIED="1337695388785" TEXT="Convert to tabular format">
102
<icon BUILTIN="flag-green"/>
103
</node>
104
<node CREATED="1337695241037" ID="ID_221714299" MODIFIED="1337695390305" TEXT="insert into database">
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<icon BUILTIN="flag-green"/>
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</node>
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</node>
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<node CREATED="1337695866690" ID="ID_82660518" MODIFIED="1337695981028" TEXT="Monthly GHCN: construct from daily or use Monthly GHCN product"/>
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</node>
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<node CREATED="1337693971567" FOLDED="true" ID="ID_1112385171" MODIFIED="1337805747720" TEXT="Station Data (other)">
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<node CREATED="1337694798883" ID="ID_1203773837" MODIFIED="1337695860669" TEXT="If we pursue anomaly approach, we may want to use WMO climatologies"/>
112
<node CREATED="1337722524115" FOLDED="true" ID="ID_277739818" LINK="https://docs.google.com/spreadsheet/ccc?key=0Amdov1dAmji5dEtMRUM1MUZmMUZ4YlRWQzZzLV9LNlE" MODIFIED="1337805747720" TEXT="Literature review of (available?) data">
113
<node CREATED="1337722559077" ID="ID_909532490" MODIFIED="1337722564374" TEXT="WorldClim data"/>
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<node CREATED="1337696712398" ID="ID_1489094293" MODIFIED="1337699833653">
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<richcontent TYPE="NODE"><html>
116
  <head>
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  </head>
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  <body>
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    <p>
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      South African <font color="#028716">(AW)</font>
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    </p>
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  </body>
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</html></richcontent>
125
<icon BUILTIN="male1"/>
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</node>
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<node CREATED="1337696721882" ID="ID_371829888" MODIFIED="1337696856847" TEXT="Neotropics?"/>
128
<node CREATED="1337696736013" ID="ID_941927867" MODIFIED="1337699849677">
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<richcontent TYPE="NODE"><html>
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  <head>
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  </head>
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  <body>
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    <p>
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      Japan? <font color="#028b08">(AW)</font>
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    </p>
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  </body>
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</html></richcontent>
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<icon BUILTIN="male1"/>
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</node>
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</node>
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</node>
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<node CREATED="1337694881142" FOLDED="true" ID="ID_424054784" MODIFIED="1337805747720">
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<richcontent TYPE="NODE"><html>
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  <head>
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  </head>
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  <body>
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    <p>
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      Quality Control <font color="#068402">(AW &amp; BP)</font>
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    </p>
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  </body>
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</html></richcontent>
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<node CREATED="1337695172158" ID="ID_817228390" MODIFIED="1337695177796" TEXT="Update database with QC flags"/>
155
<node CREATED="1337694928723" ID="ID_1036738506" MODIFIED="1337695190937" TEXT="outliers, runs, etc"/>
156
<node CREATED="1337695400785" ID="ID_679688223" MODIFIED="1337695412462" TEXT="Adam has example script"/>
157
<node CREATED="1337723193346" ID="ID_532427724" MODIFIED="1337723215371" TEXT="Station Selection (WorldClim style priorities)"/>
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</node>
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<node CREATED="1337699923359" ID="ID_1034401963" MODIFIED="1337699950943" TEXT="Spatial Query (submit polygon and date to get table of observations)"/>
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</node>
161
<node CREATED="1337713572766" FOLDED="true" ID="ID_1211719545" MODIFIED="1337805747721" TEXT="Other data">
162
<node CREATED="1337713577167" ID="ID_1584845754" MODIFIED="1337713582360" TEXT="NCEP Reanalysis?"/>
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</node>
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</node>
165
<node CREATED="1337696640713" FOLDED="true" ID="ID_1410709754" MODIFIED="1337805747721" POSITION="left" TEXT="Regions">
166
<icon BUILTIN="full-2"/>
167
<node CREATED="1337697035100" ID="ID_439992455" MODIFIED="1337697036524" TEXT="Oregon"/>
168
<node CREATED="1337697039107" ID="ID_538311410" MODIFIED="1337697041013" TEXT="South Africa"/>
169
<node CREATED="1337697050599" ID="ID_1880530792" MODIFIED="1337697053267" TEXT="East Africa"/>
170
</node>
171
<node CREATED="1337694217407" FOLDED="true" ID="ID_1692790642" MODIFIED="1337805747722" POSITION="left" TEXT="Subset">
172
<icon BUILTIN="full-3"/>
173
<node CREATED="1337694227599" FOLDED="true" ID="ID_907402330" MODIFIED="1337805747721" TEXT="Spatial">
174
<node CREATED="1337696593506" FOLDED="true" ID="ID_219701496" MODIFIED="1337805747721" TEXT="Spatial Tiling">
175
<node CREATED="1337696931165" ID="ID_255962886" MODIFIED="1337696971387" TEXT="Tiling depends on methods (will we need data from surrounding tiles or just stations)?"/>
176
<node CREATED="1337694275313" ID="ID_854736297" MODIFIED="1337696994157" TEXT="Use stations from outside region to reduce edge effects"/>
177
</node>
178
</node>
179
<node CREATED="1337694234192" FOLDED="true" ID="ID_1680696121" MODIFIED="1337805747722" TEXT="Temporal">
180
<node CREATED="1337697075948" ID="ID_1400143470" MODIFIED="1337697081425" TEXT="Subset to 1970-2010"/>
181
<node CREATED="1337697084530" ID="ID_907061196" MODIFIED="1337697092004" TEXT="Day-by-day interpolations"/>
182
</node>
183
<node CREATED="1337694241728" FOLDED="true" ID="ID_644499787" MODIFIED="1337805747722" TEXT="Reproject">
184
<node CREATED="1337694248230" ID="ID_867337175" MODIFIED="1337694263148" TEXT="Use local projection (UTM?) for interpolation?"/>
185
<node CREATED="1337721280170" ID="ID_1156119627" MODIFIED="1337721292456" TEXT="Fit in UTM and predict into translated cell centroids?"/>
186
</node>
187
<node CREATED="1337701235770" FOLDED="true" ID="ID_1775941968" MODIFIED="1337805747722" TEXT="Prepare Design matrix for modelling">
188
<node CREATED="1337701279162" ID="ID_1661261436" MODIFIED="1337764353373" TEXT="One day"/>
189
<node CREATED="1337701328594" ID="ID_274392765" MODIFIED="1337701337057" TEXT="One variable (tmax, tmin, or ppt)"/>
190
<node CREATED="1337701338233" ID="ID_241629300" MODIFIED="1337701345167" TEXT="One tile"/>
191
</node>
192
</node>
193
<node CREATED="1337697213185" FOLDED="true" ID="ID_15031549" MODIFIED="1337805747727" POSITION="right" TEXT="Interpolation">
194
<icon BUILTIN="full-4"/>
195
<node CREATED="1337697235796" FOLDED="true" ID="ID_1692618034" MODIFIED="1337805747722" TEXT="Temporal resolution (1970-2010)">
196
<node CREATED="1337697244020" ID="ID_1640475194" MODIFIED="1337697245792" TEXT="Daily"/>
197
<node CREATED="1337697246995" ID="ID_1369257827" MODIFIED="1337697249860" TEXT="Monthly"/>
198
<node CREATED="1337697251140" ID="ID_577926600" MODIFIED="1337697256708" TEXT="Monthly Climatologies"/>
199
</node>
200
<node CREATED="1337697226173" FOLDED="true" ID="ID_1296935309" MODIFIED="1337805747725" TEXT="Methods">
201
<node CREATED="1337701916996" FOLDED="true" ID="ID_880392640" MODIFIED="1337805747722" TEXT="Response variables">
202
<node CREATED="1337701929541" ID="ID_1427601938" MODIFIED="1337701953760">
203
<richcontent TYPE="NODE"><html>
204
  <head>
205
    
206
  </head>
207
  <body>
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    <p>
209
      Temperature (tmax &amp; tmin)<font color="#017708">&#160;(BP)</font>
210
    </p>
211
  </body>
212
</html></richcontent>
213
</node>
214
<node CREATED="1337701957896" ID="ID_1619372413" MODIFIED="1337702014751">
215
<richcontent TYPE="NODE"><html>
216
  <head>
217
    
218
  </head>
219
  <body>
220
    <p>
221
      Precipitation <font color="#01830b">(AW)</font>
222
    </p>
223
  </body>
224
</html></richcontent>
225
</node>
226
</node>
227
<node CREATED="1337697677834" FOLDED="true" ID="ID_599360131" MODIFIED="1337805747723" TEXT="Input variables">
228
<node CREATED="1337697688482" ID="ID_1871931734" MODIFIED="1337697695668" TEXT="Latitude"/>
229
<node CREATED="1337697691388" ID="ID_1153921404" MODIFIED="1337697698251" TEXT="Longitude"/>
230
<node CREATED="1337697699190" ID="ID_1767873058" MODIFIED="1337697703651" TEXT="Distance to Ocean"/>
231
<node CREATED="1337697704782" ID="ID_1688387348" MODIFIED="1337697714221" TEXT="Aspect (eastness &amp; northness)"/>
232
<node CREATED="1337697715634" ID="ID_995593396" MODIFIED="1337697724360" TEXT="Elevation"/>
233
<node CREATED="1337697725310" ID="ID_766953470" MODIFIED="1337697785175" TEXT="Land Surface Temperature (LST)"/>
234
<node CREATED="1337697795196" ID="ID_148550770" MODIFIED="1337697823186" TEXT="Cloud product?"/>
235
<node CREATED="1337697899207" FOLDED="true" ID="ID_1471302870" MODIFIED="1337805747723" TEXT="Land cover">
236
<node CREATED="1337697904435" ID="ID_128992060" MODIFIED="1337697910821" TEXT="interactions with LST?"/>
237
</node>
238
<node CREATED="1337714249015" FOLDED="true" ID="ID_1134140871" MODIFIED="1337805747723" TEXT="Others?">
239
<node CREATED="1337714255701" ID="ID_403437508" MODIFIED="1337714272535" TEXT="other terrain variables?"/>
240
<node CREATED="1337714285640" ID="ID_1934533760" MODIFIED="1337714302998" TEXT="coarse gridded weather (NCEP reanalysis)"/>
241
</node>
242
</node>
243
<node CREATED="1337697653796" FOLDED="true" ID="ID_1967178138" MODIFIED="1337805747724" TEXT="&apos;Raw&apos; values">
244
<node CREATED="1337697269453" FOLDED="true" ID="ID_1006915660" MODIFIED="1337805747723" TEXT="GAM">
245
<node CREATED="1337701358195" FOLDED="true" ID="ID_1552803013" MODIFIED="1337805747723" TEXT="Input variables">
246
<node CREATED="1337701442885" ID="ID_1963630966" MODIFIED="1337701451623" TEXT="Daily vs. monthly mean LST"/>
247
</node>
248
<node CREATED="1337701412448" FOLDED="true" ID="ID_1453574000" MODIFIED="1337805747723" TEXT="Interactions">
249
<node CREATED="1337701456001" ID="ID_1273197967" MODIFIED="1337701465854" TEXT="LST &amp; Landcover"/>
250
<node CREATED="1337701469632" ID="ID_651464033" MODIFIED="1337701472569" TEXT="aspect"/>
251
<node CREATED="1337701494058" ID="ID_1659159243" MODIFIED="1337701499886" TEXT="Latitude/Longitude"/>
252
</node>
253
<node CREATED="1337714980501" ID="ID_574328154" MODIFIED="1337714992688" TEXT="Spatial structure in error term?"/>
254
</node>
255
<node CREATED="1337697278338" FOLDED="true" ID="ID_1725153104" MODIFIED="1337805747724" TEXT="Co-kriging">
256
<node CREATED="1337701520770" FOLDED="true" ID="ID_1408791547" MODIFIED="1337805747724" TEXT="Variogram">
257
<node CREATED="1337701525586" ID="ID_1732269465" MODIFIED="1337701534160" TEXT="Fit with LST data"/>
258
<node CREATED="1337701535206" ID="ID_1503144865" MODIFIED="1337701541936" TEXT="Fit with station observations"/>
259
<node CREATED="1337701544595" ID="ID_1962531134" MODIFIED="1337701564932" TEXT="explore various variograms (automap)"/>
260
<node CREATED="1337701569795" ID="ID_400352692" MODIFIED="1337701574613" TEXT="Bayesian?"/>
261
</node>
262
</node>
263
<node CREATED="1337697281075" FOLDED="true" ID="ID_1837699933" MODIFIED="1337805747724" TEXT="GWR">
264
<node CREATED="1337701637242" ID="ID_912490046" MODIFIED="1337701682376" TEXT="same as above"/>
265
<node CREATED="1337701694620" ID="ID_71289629" MODIFIED="1337701711362" TEXT="range setting set (spgwr package)"/>
266
<node CREATED="1337701715058" FOLDED="true" ID="ID_424191977" MODIFIED="1337805747724" TEXT="Validation">
267
<node CREATED="1337701719851" ID="ID_1543877575" MODIFIED="1337701736306" TEXT="Range based on training dataset"/>
268
<node CREATED="1337701738472" ID="ID_1835145782" MODIFIED="1337701775835" TEXT="Krig slopes based on training data and use for predictions"/>
269
</node>
270
</node>
271
</node>
272
<node CREATED="1337697646348" FOLDED="true" ID="ID_1127846820" MODIFIED="1337805747724" TEXT="Anomaly Approach">
273
<node CREATED="1337697269453" ID="ID_1974814189" MODIFIED="1337697277159" TEXT="GAM"/>
274
<node CREATED="1337697278338" ID="ID_1114918308" MODIFIED="1337722375384" TEXT="cokriging"/>
275
<node CREATED="1337697281075" ID="ID_1403425851" MODIFIED="1337697282244" TEXT="GWR"/>
276
</node>
277
<node CREATED="1337697825505" ID="ID_1235804707" MODIFIED="1337697854510" TEXT="Backup method (for times/locations that primary method fails)"/>
278
</node>
279
<node CREATED="1337700453400" FOLDED="true" ID="ID_1764057631" MODIFIED="1337805747727" TEXT="Assessment">
280
<node CREATED="1337697587352" FOLDED="true" ID="ID_1111409905" MODIFIED="1337805747725">
281
<richcontent TYPE="NODE"><html>
282
  <head>
283
    
284
  </head>
285
  <body>
286
    <p>
287
      Literature Review: Compare to other interpolation studies <font color="#01a00a">(BP &amp; AW)</font>
288
    </p>
289
  </body>
290
</html></richcontent>
291
<node CREATED="1337702592191" ID="ID_1109082387" MODIFIED="1337702597850" TEXT="Mendely shared library"/>
292
<node CREATED="1337722297901" ID="ID_702952208" MODIFIED="1337722301750" TEXT="Table of methods"/>
293
<node CREATED="1337722303924" ID="ID_437946867" MODIFIED="1337722313586" TEXT="Explanation of similarities and differences"/>
294
<node CREATED="1337722320078" ID="ID_1695809130" MODIFIED="1337722338669" TEXT="GAM vs Spline vs ANUSPLIN"/>
295
</node>
296
<node CREATED="1337697289184" FOLDED="true" ID="ID_800767423" MODIFIED="1337805747726" TEXT="Validation (holdout stations)">
297
<node CREATED="1337721537535" FOLDED="true" ID="ID_1440764691" MODIFIED="1337805747725" TEXT="metrics">
298
<node CREATED="1337697291945" ID="ID_1279187065" MODIFIED="1337697296054" TEXT="RMSE"/>
299
<node CREATED="1337697297260" ID="ID_676994378" MODIFIED="1337697298703" TEXT="MAE"/>
300
<node CREATED="1337697300612" ID="ID_1888790124" MODIFIED="1337697344604" TEXT="Bias (mean error)"/>
301
<node CREATED="1337697381000" ID="ID_835799389" MODIFIED="1337697385278" TEXT="R^2"/>
302
<node CREATED="1337700496780" FOLDED="true" ID="ID_213135038" MODIFIED="1337805747725" TEXT="Precipitation">
303
<node CREATED="1337700502834" ID="ID_316342827" MODIFIED="1337700541140" TEXT="sensitivity/specificity"/>
304
<node CREATED="1337700543098" ID="ID_1199492789" MODIFIED="1337700643961" TEXT="Relative error rather than absolute"/>
305
</node>
306
</node>
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