Revision 660e8459
Added by Benoit Parmentier over 8 years ago
| climate/research/oregon/interpolation/master_script_stage_7.R | ||
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#AUTHOR: Benoit Parmentier |
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#CREATED ON: 01/01/2016 |
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#MODIFIED ON: 06/24/2016
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#MODIFIED ON: 07/05/2016
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#PROJECT: NCEAS INPLANT: Environment and Organisms |
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#First source these files: |
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#Rscript /nobackupp8/bparmen1/env_layers_scripts/master_script_stage_7_06192016.R TMAX /nobackupp6/aguzman4/climateLayers/out/ reg4 reg4_1999 /nobackupp8/bparmen1/climateLayers/out/reg4 TRUE 1999 6 1e+07 use_edge_weights rmse 19990107 19990108 /nobackupp8/bparmen1/NEX_data/regions_input_files/r_mask_LST_reg4.tif /nobackupp6/aguzman4/climateLayers/out/reg4/assessment/output_reg4_1999/df_assessment_files_reg4_1999_reg4_1999.txt python ac_testing FALSE Int16 100 -100,100 |
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#run mosaic for ac testing, n |
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#Rscript /nobackupp8/bparmen1/env_layers_scripts/master_script_stage_7_06192016.R TMAX /nobackupp6/aguzman4/climateLayers/out/ reg4 reg4_1999 /nobackupp8/bparmen1/climateLayers/out/reg4 TRUE 1999 6 1e+07 use_edge_weights n 19990107 19990108 /nobackupp8/bparmen1/NEX_data/regions_input_files/r_mask_LST_reg4.tif /nobackupp6/aguzman4/climateLayers/out/reg4/assessment/output_reg4_1999/df_assessment_files_reg4_1999_reg4_1999.txt python ac_testing FALSE Int16 100 -100,100 |
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#Rscript /nobackupp8/bparmen1/env_layers_scripts/master_script_stage_7_06192016.R TMAX /nobackupp6/aguzman4/climateLayers/out/ reg5 reg5_1985 /nobackupp6/aguzman4/climateLayers/out/reg5/mosaicsAc/ TRUE 1981 6 1e+07 use_edge_weights n 19910101 19910101 /nobackupp8/bparmen1/NEX_data/regions_input_files/r_mask_LST_reg5.tif /nobackupp6/aguzman4/climateLayers/out/reg5/assessment/output_reg5_1985/df_assessment_files_reg5_1985_reg5_1985.txt python ac_testing FALSE Int16 100 -100,100
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#Region 5: test |
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#Rscript /nobackupp8/bparmen1/env_layers_scripts/master_script_stage_7_07052016.R TMAX /nobackupp6/aguzman4/climateLayers/out/ reg5 reg5_1991 /nobackupp6/aguzman4/climateLayers/out/reg5/mosaicsAc/ TRUE 1991 6 1e+07 use_edge_weights rmse 19910101 19910103 /nobackupp8/bparmen1/NEX_data/regions_input_files/r_mask_LST_reg5.tif /nobackupp6/aguzman4/climateLayers/out/reg5/assessment/output_reg5_1991/df_assessment_files_reg5_1991_reg5_1991.txt python ac_testing FALSE Int16 100 -100,100
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#script /nobackupp8/bparmen1/env_layers_scripts/master_script_stage_7_06192016.R TMAX /nobackupp6/aguzman4/climateLayers/out/ reg5 reg5_1985 /nobackupp6/aguzman4/climateLayers/out/reg5/mosaicsAc/ TRUE 1985 6 1e+07 use_edge_weights n 19850101 19850101 /nobackupp8/bparmen1/NEX_data/regions_input_files/r_mask_LST_reg5.tif /nobackupp6/aguzman4/climateLayers/out/reg5/assessment/output_reg5_1985/df_assessment_files_reg5_1985_reg5_1985.txt python ac_testing FALSE Int16 100 -100,100 |
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#script_path <- "/home/parmentier/Data/IPLANT_project/env_layers_scripts" |
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script_path <- "/nobackupp8/bparmen1/env_layers_scripts" #path to script |
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function_mosaicing_functions <- "global_run_scalingup_mosaicing_function_07012016.R" #PARAM12
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function_mosaicing <-"global_run_scalingup_mosaicing_07012016.R"
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function_mosaicing_functions <- "global_run_scalingup_mosaicing_function_07052016.R" #PARAM12
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function_mosaicing <-"global_run_scalingup_mosaicing_07052016.R"
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source(file.path(script_path,function_mosaicing)) #source all functions used in this script |
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source(file.path(script_path,function_mosaicing_functions)) #source all functions used in this script |
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#day_start <- "19990701" #PARAM 12 arg 12 |
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#day_end <- "19990703" #PARAM 13 arg 13 |
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day_start <- "19910101" #PARAM 12 arg 12 |
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day_end <- "19910101" #PARAM 13 arg 13
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day_end <- "19910103" #PARAM 13 arg 13
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infile_mask <- "/nobackupp8/bparmen1/NEX_data/regions_input_files/r_mask_LST_reg5.tif" #PARAM 14, arg 14 |
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df_assessment_files_name <- "/nobackupp6/aguzman4/climateLayers/out/reg5/assessment/output_reg5_1991/df_assessment_files_reg5_1991_reg5_1991.txt" # data.frame with all files used in assessmnet, PARAM 15 |
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#df_assessment_files_name <- "/nobackupp6/aguzman4/climateLayers/out/reg5/assessment/output_reg5_1985/df_assessment_files_reg5_1985_reg5_1985.txt" |
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#debug(debug_fun_test) |
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#debug_fun_test(list_param_raster_prediction) |
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i <- 1 #this select the first year of list_year_predicted |
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function_mosaicing_functions <- "global_run_scalingup_mosaicing_function_06232016.R" #PARAM12
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function_mosaicing <-"global_run_scalingup_mosaicing_06232016.R"
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source(file.path(script_path,function_mosaicing)) #source all functions used in this script |
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source(file.path(script_path,function_mosaicing_functions)) #source all functions used in this script |
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#function_mosaicing_functions <- "global_run_scalingup_mosaicing_function_07012016.R" #PARAM12
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#function_mosaicing <-"global_run_scalingup_mosaicing_07012016.R"
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#source(file.path(script_path,function_mosaicing)) #source all functions used in this script
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#source(file.path(script_path,function_mosaicing_functions)) #source all functions used in this script
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if (stages_to_run[7]==7){
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assessment_prediction_obj <- run_mosaicing_prediction_fun(i,list_param_run_mosaicing_prediction) |
Also available in: Unified diff
testing debugged code for region 5, Africa from command line