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Revision 83ead2bb

Added by Benoit Parmentier almost 12 years ago

Master script run parameters for tmax year 2000 predictions using 1980-2010 monthly average

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climate/research/oregon/interpolation/master_script_temp.R
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#STAGE 5: Output analyses-visualization of results for specific dates...
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#
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#AUTHOR: Benoit Parmentier                                                                       
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#DATE: 03/14/2013                                                                                 
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#DATE: 03/18/2013                                                                                 
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#PROJECT: NCEAS INPLANT: Environment and Organisms --TASK#363, TASK$568--   
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......
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db.name <- "ghcn"       # name of the Postgres database
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var <- "TMAX"           # name of the variables to keep: TMIN, TMAX or PRCP
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range_years<-c("2000","2001") #right bound not included in the range!!
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range_years_clim<-c("2000","2011") #right bound not included in the range!!
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range_years_clim<-c("1980","2011") #right bound not included in the range!!
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infile1<- "outline_venezuela_region__VE_01292013.shp"      #This is the shape file of outline of the study area                                                      #It is an input/output of the covariate script
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infile2<-"/home/layers/data/climate/ghcn/v2.92-upd-2012052822/ghcnd-stations.txt"                              #This is the textfile of station locations from GHCND
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infile_covariates<-"covariates__venezuela_region__VE_01292013.tif" #this is an output from covariate script and used in stage 3 and stage 4
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CRS_locs_WGS84<-CRS("+proj=longlat +ellps=WGS84 +datum=WGS84 +towgs84=0,0,0") #Station coords WGS84: same as earlier
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in_path <- "/home/parmentier/Data/IPLANT_project/Venezuela_interpolation/Venezuela_01142013/input_data/"
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out_prefix<-"_365d_GAM_fus5_all_lstd_03142013"                #User defined output prefix
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out_prefix<-"_365d_GAM_fus5_all_lstd_03182013"                #User defined output prefix
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#qc_flags<-    flags allowe for the query from the GHCND??
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#The names of covariates can be changed...these names should be output/input from covar script!!!
......
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                                "interpolation_method")
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#Source file
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source(file.path(script_path,"GAM_fusion_analysis_raster_prediction_multisampling_03132013.R"))
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source(file.path(script_path,"GAM_fusion_analysis_raster_prediction_multisampling_03182013.R"))
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#Make the function call
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raster_prediction_gam_fus_obj <-raster_prediction_gam_fusion(list_param_raster_prediction)

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