Revision 899859d9
Added by Benoit Parmentier over 11 years ago
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#STAGE 5: Output analyses: assessment of results for specific dates... |
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# |
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#AUTHOR: Benoit Parmentier |
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#DATE: 07/02/2013
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#DATE: 07/04/2013
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#PROJECT: NCEAS INPLANT: Environment and Organisms --TASK#363, TASK$568-- |
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stages_to_run<-c(0,2,3,4,5) #May decide on antoher strategy later on... |
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var<-"TMAX" # variable being interpolated |
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out_prefix<-"_365d_gam_day_lst_07032013" #User defined output prefix
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out_suffix<-"_OR_07032013"
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out_prefix<-"_365d_gam_day_lst_comb2_07042013" #User defined output prefix
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out_suffix<-"_OR_07042013"
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out_suffix_modis <-"_05302013" #use tiles produce previously |
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#interpolation_method<-c("gam_fusion","gam_CAI","gam_daily") #other otpions to be added later
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#Models to run...this can be change for each run |
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list_models<-c("y_var ~ s(elev_s)",
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"y_var ~ s(LST)", |
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"y_var ~ s(elev_s,LST)", |
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"y_var ~ s(lat) + s(lon)+ s(elev_s)", |
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"y_var ~ s(lat,lon,elev_s)", |
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"y_var ~ s(lat,lon) + s(elev_s) + s(N_w,E_w) + s(LST)", |
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"y_var ~ s(lat,lon) + s(elev_s) + s(N_w,E_w) + s(LST) + s(LC2)", |
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"y_var ~ s(lat,lon) + s(elev_s) + s(N_w,E_w) + s(LST) + s(LC6)", |
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"y_var ~ s(lat,lon) + s(elev_s) + s(N_w,E_w) + s(LST) + s(DISTOC)") |
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#list_models<-c("y_var ~ elev_s",
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# "y_var ~ LST", |
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# "y_var ~ elev_s*LST") |
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# "y_var ~ lat + lon + elev_s", |
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# "y_var ~ lat*lon*elev_s", |
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# "y_var ~ lat*lon + elev_s + N_w*E_w + LST", |
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# "y_var ~ lat*lon + elev_s + N_w*E_w + LST + LC2", |
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# "y_var ~ lat*lon + elev_s + N_w*E_w + LST + LC6", |
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# "y_var ~ lat*lon + elev_s + N_w*E_w + LST + DISTOC") |
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#Combination 1 |
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# list_models<-c("y_var ~ s(elev_s)",
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# "y_var ~ s(LST)", |
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# "y_var ~ s(elev_s,LST)", |
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# "y_var ~ s(lat) + s(lon)+ s(elev_s)", |
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# "y_var ~ s(lat,lon,elev_s)", |
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# "y_var ~ s(lat,lon) + s(elev_s) + s(N_w,E_w) + s(LST)", |
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# "y_var ~ s(lat,lon) + s(elev_s) + s(N_w,E_w) + s(LST) + s(LC6)", |
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# "y_var ~ s(lat,lon) + s(elev_s) + s(N_w,E_w) + s(LST) + ti(LC6,LST)", |
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# "y_var ~ s(lat,lon) + s(elev_s) + s(N_w,E_w) + s(LST) + s(DISTOC)") |
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#testing new combinations and tensor for paper |
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list_models<-c("y_var ~ s(x,y)",
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"y_var ~ s(x)+ s(y) + s(LST) + ti(x,y) + ti(x,y,LST)", |
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"y_var ~ s(elev_s) + s(LST) + ti(elev_s,LST)", |
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"y_var ~ s(lat) + s(lon) + s(LST)", |
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"y_var ~ s(lat) + s(lon) + s(elev_s)+ ti(lat,lon) + ti(lat,lon,elev_s)", |
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"y_var ~ s(lat,lon) + s(LST)", |
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"y_var ~ s(lat,lon) + s(elev_s) + s(LST)", |
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"y_var ~ s(x) + s(y) + s(elev_s) + ti(x,y) + ti(x,y,elev_s)") |
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#list_models<-c("y_var~ lat + lon + elev_",
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# "y_var~ I(lat*lon) + elev_s", |
Also available in: Unified diff
gam day, testing covariates combination with nesting and ti() for paper Oregon