#AUTHOR: Benoit Parmentier                                                                        

#CREATED ON: 01/01/2016  

#PROJECT: NCEAS INPLANT: Environment and Organisms                                                                           

#First source these files:

#script_path <- "/home/parmentier/Data/IPLANT_project/env_layers_scripts"

script_path <- "/nobackupp8/bparmen1/env_layers_scripts" #path to script

function_mosaicing_functions <- "global_run_scalingup_mosaicing_function_05312016.R" #PARAM12

source(file.path(script_path,function_mosaicing)) #source all functions used in this script 

source(file.path(script_path,function_mosaicing_functions)) #source all functions used in this script 

df_assessment_files_name <- "/nobackupp6/aguzman4/climateLayers/out/reg4/assessment/output_reg4_1999/df_assessment_files_reg4_1999_reg4_1999.txt"  # data.frame with all files used in assessmnet, PARAM 15

algorithm <- "python" #PARAM 16 #if R use mosaic function for R, if python use modified gdalmerge script from Alberto Guzmann

#layers_option <- c("var_pred") #arg 17 ,param 17, options are:#res_training, res_testing,ac_training, ac_testing, var_pred

#layers_option <- c("res_testing") #arg 17 ,param 17, options are:#res_training, res_testing,ac_training, ac_testing, var_pred

tmp_files <- TRUE #arg 18, param 18, keep temp files if TRUE

data_type <- "Int16" #, param 19, use int32 for output layers mosaiced