| 1 |
9a19743f
|
Adam M. Wilson
|
## script to visualize cloud frequency data
|
| 2 |
|
|
|
| 3 |
|
|
setwd("~/acrobates/adamw/projects/cloud/")
|
| 4 |
|
|
|
| 5 |
|
|
library(rasterVis)
|
| 6 |
|
|
|
| 7 |
d7dc526e
|
Adam M. Wilson
|
## read in global coasts for nice plotting
|
| 8 |
|
|
library(maptools)
|
| 9 |
|
|
|
| 10 |
|
|
data(wrld_simpl)
|
| 11 |
|
|
coast <- unionSpatialPolygons(wrld_simpl, rep("land",nrow(wrld_simpl)), threshold=5)
|
| 12 |
|
|
coast=as(coast,"SpatialLines")
|
| 13 |
|
|
#coast=spTransform(coast,CRS(projection(mod35)))
|
| 14 |
|
|
|
| 15 |
9a19743f
|
Adam M. Wilson
|
|
| 16 |
|
|
#### Evaluate MOD35 Cloud data
|
| 17 |
d86b0a4a
|
Adam M. Wilson
|
mc=brick("~/acrobates/adamw/projects/cloud/data/mod09.nc",varname="CF")
|
| 18 |
d6ddb3e2
|
Adam M. Wilson
|
NAvalue(mc)=-1
|
| 19 |
9a19743f
|
Adam M. Wilson
|
|
| 20 |
d7dc526e
|
Adam M. Wilson
|
cols=colorRampPalette(c("#000000","#00FF00","#FF0000"))#"black","blue","red"))
|
| 21 |
|
|
for(i in 1:156){
|
| 22 |
|
|
png(paste("output/mod09_fullanimation_",i,".png",sep=""),width=2000,height=1000)
|
| 23 |
|
|
print(i)
|
| 24 |
d86b0a4a
|
Adam M. Wilson
|
r=mm[[i]]
|
| 25 |
d7dc526e
|
Adam M. Wilson
|
print(levelplot(r,col.regions=cols(100),at=seq(0,100,len=100),margin=F,maxpixels=1e6,ylim=c(-60,70),main=paste(names(mod09)[i])))+
|
| 26 |
|
|
layer(sp.lines(coast))
|
| 27 |
|
|
dev.off()
|
| 28 |
|
|
}
|
| 29 |
9a19743f
|
Adam M. Wilson
|
|
| 30 |
d7dc526e
|
Adam M. Wilson
|
#### Evaluate MOD35 Cloud data
|
| 31 |
d86b0a4a
|
Adam M. Wilson
|
mmc=brick("~/acrobates/adamw/projects/cloud/data/mod09_clim_mean.nc",varname="CF")
|
| 32 |
|
|
names(mmc)=month.name
|
| 33 |
|
|
NAvalue(mmc)=-1
|
| 34 |
9a19743f
|
Adam M. Wilson
|
|
| 35 |
d7dc526e
|
Adam M. Wilson
|
cols=colorRampPalette(c("#000000","#00FF00","#FF0000"))#"black","blue","red"))
|
| 36 |
|
|
for(i in 1:12){
|
| 37 |
|
|
png(paste("output/mod09_animation_",i,".png",sep=""),width=2000,height=1000)
|
| 38 |
|
|
print(i)
|
| 39 |
d86b0a4a
|
Adam M. Wilson
|
r=mmc[[i]]
|
| 40 |
|
|
print(levelplot(r,col.regions=cols(100),at=seq(0,100,len=100),margin=F,maxpixels=1e7,ylim=c(-60,70),
|
| 41 |
|
|
main=paste(month.name[i]),cex.main=3,scales=list(draw=F),cuts=99))+
|
| 42 |
d7dc526e
|
Adam M. Wilson
|
layer(sp.lines(coast))
|
| 43 |
|
|
dev.off()
|
| 44 |
|
|
}
|
| 45 |
9a19743f
|
Adam M. Wilson
|
|
| 46 |
|
|
|
| 47 |
|
|
## climatologies
|
| 48 |
d86b0a4a
|
Adam M. Wilson
|
mac=brick("~/acrobates/adamw/projects/cloud/data/mod09_clim_mac.nc",varname="CF_annual")
|
| 49 |
d7dc526e
|
Adam M. Wilson
|
|
| 50 |
|
|
pdf("output/mod09_climatology.pdf",width=11,height=8.5)
|
| 51 |
d86b0a4a
|
Adam M. Wilson
|
levelplot(mac,col.regions=grey(seq(0,1,len=100)),cuts=99,margin=F,max.pixels=1e6)+
|
| 52 |
|
|
layer(sp.lines(coast,lwd=.5,col="black"))
|
| 53 |
d7dc526e
|
Adam M. Wilson
|
dev.off()
|
| 54 |
|
|
|
| 55 |
|
|
|
| 56 |
d86b0a4a
|
Adam M. Wilson
|
## Compare with worldclim and NPP
|
| 57 |
d7dc526e
|
Adam M. Wilson
|
wc=stack(as.list(paste("/mnt/data/jetzlab/Data/environ/global/worldclim/prec_",1:12,".bil",sep="")))
|
| 58 |
d86b0a4a
|
Adam M. Wilson
|
wc_map=stack(as.list(paste("/mnt/data/jetzlab/Data/environ/global/worldclim/bio_12.bil",sep="")))
|
| 59 |
|
|
npp=raster("/mnt/data/jetzlab/Data/environ/global/MODIS/MOD17A3/MOD17A3_Science_NPP_mean_00_12.tif",sep="")
|
| 60 |
d7dc526e
|
Adam M. Wilson
|
|
| 61 |
|
|
|
| 62 |
d86b0a4a
|
Adam M. Wilson
|
pdf("output/mod09_worldclim.pdf",width=11,height=8.5)
|
| 63 |
|
|
regs=list(
|
| 64 |
d6ddb3e2
|
Adam M. Wilson
|
Cascades=extent(c(-122.8,-118,44.9,47)),
|
| 65 |
d86b0a4a
|
Adam M. Wilson
|
Hawaii=extent(c(-156.5,-154,18.75,20.5)),
|
| 66 |
|
|
Boliva=extent(c(-71,-63,-20,-15)),
|
| 67 |
|
|
Venezuela=extent(c(-69,-59,0,7)),
|
| 68 |
d6ddb3e2
|
Adam M. Wilson
|
CFR=extent(c(17.75,22.5,-34.8,-32.6)),
|
| 69 |
|
|
Madagascar=extent(c(46,52,-17,-12))
|
| 70 |
|
|
#reg2=extent(c(-81,-70,-4,10))
|
| 71 |
d86b0a4a
|
Adam M. Wilson
|
)
|
| 72 |
d6ddb3e2
|
Adam M. Wilson
|
for(r in 1:length(regs)){
|
| 73 |
d86b0a4a
|
Adam M. Wilson
|
p_map=levelplot(crop(wc_map,regs[[r]]),col.regions=grey(seq(0,1,len=100)),cuts=99,margin=F,maxpixels=1e5,colorkey=list(space="bottom",height=.75),xlab="",ylab="",main=names(regs)[r],useRaster=T)
|
| 74 |
|
|
p_mac=levelplot(crop(mac,regs[[r]]),col.regions=grey(seq(0,1,len=100)),cuts=99,margin=F,maxpixels=1e5,colorkey=list(space="bottom",height=.75),useRaster=T)
|
| 75 |
d6ddb3e2
|
Adam M. Wilson
|
#p_npp=levelplot(crop(npp,regs[[r]]),col.regions=grey(seq(0,1,len=100)),cuts=99,margin=F,maxpixels=1e5,colorkey=list(space="bottom",height=.5),zscaleLog=T,useRaster=T) #"NPP"=p_npp,
|
| 76 |
|
|
p3=c("WorldClim Mean Annual Precip (mm)"=p_map,"MOD09 Cloud Frequency (%)"=p_mac,x.same=T,y.same=T,merge.legends=T,layout=c(2,1))
|
| 77 |
d7dc526e
|
Adam M. Wilson
|
print(p3)
|
| 78 |
d6ddb3e2
|
Adam M. Wilson
|
}
|
| 79 |
d86b0a4a
|
Adam M. Wilson
|
dev.off()
|
| 80 |
d7dc526e
|
Adam M. Wilson
|
|
| 81 |
|
|
|
| 82 |
|
|
## reduced resolution
|
| 83 |
ba7057c4
|
Adam M. Wilson
|
|
| 84 |
|
|
## read in GEWEX 1-degree data
|
| 85 |
|
|
gewex=raster("data/gewex/CA_PATMOSX_NOAA.nc")
|
| 86 |
|
|
|
| 87 |
d86b0a4a
|
Adam M. Wilson
|
mod09_8km=aggregate(mod09_mac,8)
|
| 88 |
d7dc526e
|
Adam M. Wilson
|
|
| 89 |
|
|
pdf("output/mod09_resolution.pdf",width=11,height=8.5)
|
| 90 |
d86b0a4a
|
Adam M. Wilson
|
p1=levelplot(mod09_mac,col.regions=grey(seq(0,1,len=100)),cuts=99,margin=F,max.pixels=1e5)
|
| 91 |
|
|
p2=levelplot(mod09_8km,col.regions=grey(seq(0,1,len=100)),cuts=99,margin=F,max.pixels=1e5)
|
| 92 |
|
|
p3=levelplot(mod09_1deg,col.regions=grey(seq(0,1,len=100)),cuts=99,margin=F,max.pixels=1e5)
|
| 93 |
|
|
print(c(p1,p2,p3,x.same=T,y.same=T,merge.legends=F))
|
| 94 |
d7dc526e
|
Adam M. Wilson
|
|
| 95 |
9a19743f
|
Adam M. Wilson
|
|
| 96 |
d86b0a4a
|
Adam M. Wilson
|
p1=levelplot(crop(mod09_mac,reg2),col.regions=grey(seq(0,1,len=100)),cuts=99,margin=F,max.pixels=1e5)
|
| 97 |
|
|
p2=levelplot(crop(mod09_8km,reg2),col.regions=grey(seq(0,1,len=100)),cuts=99,margin=F,max.pixels=1e5)
|
| 98 |
|
|
p3=levelplot(crop(mod09_1deg,reg2),col.regions=grey(seq(0,1,len=100)),cuts=99,margin=F,max.pixels=1e5)
|
| 99 |
|
|
print(c(p1,p2,p3,x.same=T,y.same=T,merge.legends=F))
|
| 100 |
9a19743f
|
Adam M. Wilson
|
|
| 101 |
d86b0a4a
|
Adam M. Wilson
|
p1=levelplot(crop(mod09_mac,reg3),col.regions=grey(seq(0,1,len=100)),cuts=99,margin=F,max.pixels=1e5)
|
| 102 |
|
|
p2=levelplot(crop(mod09_8km,reg3),col.regions=grey(seq(0,1,len=100)),cuts=99,margin=F,max.pixels=1e5)
|
| 103 |
|
|
p3=levelplot(crop(mod09_1deg,reg3),col.regions=grey(seq(0,1,len=100)),cuts=99,margin=F,max.pixels=1e5)
|
| 104 |
|
|
print(c(p1,p2,p3,x.same=T,y.same=T,merge.legends=F))
|
| 105 |
9a19743f
|
Adam M. Wilson
|
|
| 106 |
d86b0a4a
|
Adam M. Wilson
|
dev.off()
|
