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Revision cf724805

Added by Adam Wilson about 12 years ago

Resolved problem with temporary directory for Rscript call.

View differences:

climate/procedures/MOD06_L2_process.r
90 90 
#RESAMPLING_TYPE =",ifelse(grepl("Flag|Mask|Quality",vars),"NN","CUBIC"),"
91 91 
RESAMPLING_TYPE =NN
92 92 
OUTPUT_PROJECTION_TYPE = SIN
93 
 OUTPUT_PROJECTION_PARAMETERS = ( 6371007.181 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 )
93 
OUTPUT_PROJECTION_PARAMETERS = ( 6371007.181 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 )
94 94 
# projection parameters from http://landweb.nascom.nasa.gov/cgi-bin/QA_WWW/newPage.cgi?fileName=sn_gctp
95 95 
ELLIPSOID_CODE = WGS84
96 96 
OUTPUT_TYPE = HDFEOS
......
98 98 
END
99 99 

  		




  100
  100
  
    
",sep="")


  		




  101
  
  
    
 


  		




  
  101
  
    

  		




  102
  102
  
    
  ## if any remnants from previous runs remain, delete them


  		




  103
  103
  
    
  if(length(list.files(tempdir(),pattern=basename(file)))>0)


  		




  104
  104
  
    
    file.remove(list.files(tempdir(),pattern=basename(file),full=T))


  		




  ......




  269
  269
  
    
##mod06(date,tile)


  		




  270
  270
  
    

  		




  271
  271
  
    
## run it for all dates


  		




  272
  
  
    
mclapply(notdone[1:100],mod06,tile)


  		




  
  272
  
    
mclapply(notdone,mod06,tile)


  		




  273
  273
  
    

  		




  274
  274
  
    

  		




  275
  275
  
    
## quit R


  		












  

    
      climate/procedures/Pleiades.R
    
  





  11
  11
  
    

  		




  12
  12
  
    
cat(paste("


  		




  13
  13
  
    
#PBS -S /bin/bash


  		




  14
  
  
    
#PBS -l select=1:ncpus=4:mpiprocs=4:model=wes


  		




  
  14
  
    
#PBS -l select=64:ncpus=4:mpiprocs=4:model=wes


  		




  15
  15
  
    
####old PBS -l select=64:ncpus=4:mpiprocs=4:model=wes


  		




  16
  16
  
    
####### old: select=48:ncpus=8:mpiprocs=8:model=neh


  		




  17
  
  
    
#PBS -l walltime=0:10:00


  		




  
  17
  
    
#PBS -l walltime=10:00:00


  		




  18
  18
  
    
#PBS -j oe


  		




  19
  19
  
    
#PBS -m e


  		




  20
  20
  
    
#PBS -V


  		




  21
  21
  
    
####PBS -W group_list=s1007


  		




  22
  
  
    
#PBS -q devel


  		




  
  22
  
    
###PBS -q devel


  		




  23
  23
  
    
###PBS -o log/log_^array_index^


  		




  24
  24
  
    
#PBS -o log/log_DataCompile


  		




  25
  25
  
    
#PBS -M adam.wilson@yale.edu


  		




  ......




  54
  54
  
    
#system("cat ~/environmental-layers/climate/procedures/MOD06_L2_process.r")


  		




  55
  55
  
    

  		




  56
  56
  
    
## Submit it (and keep the pid)!


  		




  57
  
  
    
pid=system("qsub -q devel MOD06_process",intern=T); pid; pid=strsplit(pid,split="[.]")[[1]][1]


  		




  
  57
  
    
pid=system("qsub MOD06_process",intern=T); pid; pid=strsplit(pid,split="[.]")[[1]][1]


  		




  58
  58
  
    

  		




  59
  59
  
    
#system("qsub MOD06_process")


  		




  60
  60
  
    

  		




  ......




  71
  71
  
    

  		




  72
  72
  
    
### copy the files back to Yale


  		




  73
  73
  
    
system("scp 2_daily/* adamw@acrobates.eeb.yale.edu:/data/personal/adamw/projects/interp/")


  		




  
  74
  
    

  		




  
  75
  
    
system("scp  /tmp/Rtmp6I6tFn/MOD06_L2.A2000061.1615.051.2010273184629.hdf adamw@acrobates.eeb.yale.edu:/data/personal/adamw/projects/interp/")


  		




  
  76
  
    

  		




  
  77
  
    
list.files(" /tmp/Rtmp6I6tFn")


  		












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