Revision e5db2cbc
Added by selv over 11 years ago
.gitignore | ||
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*.sh~ |
terrain/procedures/dem_variables/gmted2010_res_x10/sc1_wget_gmted2010.sh | ||
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# download unzip and tif conversion of the Global Multi-resolution Terrain Elevation Data 2010 (GMTED2010) |
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# setting working directory |
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INDIR=/mnt/data2/dem_variables/GMTED2010 |
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cd $INDIR |
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# download all the zip file from http://topotools.cr.usgs.gov/gmted_viewer/gmted2010_global_grids.php |
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# using multiprocess approch |
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url=http://gmted.cr.usgs.gov/gmted/Grid_ZipFiles/ |
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echo $url"be75_grd.zip" $url"ds75_grd.zip" $url"md75_grd.zip" $url"mi75_grd.zip" $url"mn75_grd.zip" $url"mx75_grd.zip" $url"sd75_grd.zip" | xargs -n 1 -P 7 wget -d /mnt/data2/dem_variables/GMTED2010/zip/ $1 |
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# unzip the file using multiprocess approch |
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ls /mnt/data2/dem_variables/GMTED2010/zip/*.zip | xargs -n 1 -P 7 bash -c $' |
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dir=`basename $1 .zip` |
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unzip -d /mnt/data2/dem_variables/GMTED2010/tiles/$dir $1 |
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' _ |
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# transform to tif and tiling them using multiprocess approch |
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# be75_grd.zip Breakline Emphasis , 7.5 arc-seconds |
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# ds75_grd.zip Systematic Subsample , 7.5 arc-seconds |
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# md75_grd.zip Median Statistic , 7.5 arc-seconds |
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# mi75_grd.zip Minimum Statistic , 7.5 arc-seconds |
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# mn75_grd.zip Mean Statistic , 7.5 arc-seconds |
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# mx75_grd.zip Maximum Statistic , 7.5 arc-seconds |
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# sd75_grd.zip Standard Dev. Statistic, 7.5 arc-seconds |
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echo be75_grd ds75_grd md75_grd mi75_grd mn75_grd mx75_grd sd75_grd | xargs -n 1 -P 7 bash -c $' |
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dir=$1 |
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INDIR=/mnt/data2/dem_variables/GMTED2010/tiles/$dir |
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for nx in `seq 0 9` ; do |
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for ny in `seq 0 4` ; do |
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xoff=$(echo 17280 \* $nx | bc) |
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yoff=$(echo 13440 \* $ny | bc) |
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xsize=17280 |
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ysize=13440 |
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gdal_translate -srcwin $xoff $yoff $xsize $ysize -co COMPRESS=LZW $INDIR/$dir $INDIR"_tif"/$nx"_"$ny.tif |
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done |
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done |
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' _ |
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# at the end fo this process the 50 tiles tiff has been created for each of the defined component |
terrain/procedures/dem_variables/gmted2010_res_x10/sc1b_pixel_correction.sh | ||
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# correct immage with anomalus pixel valus. |
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# the file |
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# giuseppea@turaco:/mnt/data2/dem_variables/GMTED2010/altitude/class_mi$ pkinfo -hist -i ../../tiles/mi75_grd_tif/5_1.tif | more |
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# -931 1 anomalus |
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# -898 1 anomalus |
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# -498 1 |
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# -461 1 |
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# therefore the -931 -898 will be fill in withe the nearby pixel. |
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cd /mnt/data2/dem_variables/GMTED2010/tiles/mi75_grd_tif |
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cp 5_1.tif 5_1_orig.tiff |
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pkgetmask -co COMPRESS=LZW -i 5_1.tif -min -890 -max 10000 -t 1 -f 0 -o 5_1_mask.tif |
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pkfillnodata -i 5_1.tif -m 5_1_mask.tif -o 5_1_fill.tif |
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mv 5_1_fill.tif 5_1.tif |
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rm 5_1_mask.tif |
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# the values becom -93 and -80 |
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# -93 2830 |
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# -93 2831 |
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# |
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# -80 19449 |
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# -80 19450 |
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# correction of a square box of 500 500 pixel. Set the value = to 179 as the near by pixel. |
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cd /mnt/data2/dem_variables/GMTED2010/tiles/mi75_grd_tif |
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gdal_translate -srcwin 10070 3830 500 500 2_1.tif 2_1_clip.tif |
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pksetmask -co COMPRESS=LZW -t 0 -f 179 -i 2_1.tif -m 2_1_clip.tif -o 2_1_correct.tif |
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mv 2_1.tif 2_1_orig.tiff |
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mv 2_1_correct.tif 2_1.tif |
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rm 2_1_clip.tif |
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# correction of a square in the caspian sea set value to -27 |
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cd /mnt/data2/dem_variables/GMTED2010/tiles/mi75_grd_tif |
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gdal_translate -srcwin 5719 5249 1050 1050 6_1.tif 6_1_clip1.tif |
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gdal_translate -srcwin 6200 6200 1050 550 6_1.tif 6_1_clip2.tif |
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gdal_translate -srcwin 6700 6700 1050 550 6_1.tif 6_1_clip3.tif |
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gdal_translate -srcwin 7150 7000 550 700 6_1.tif 6_1_clip4.tif |
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gdal_translate -srcwin 6700 7550 1050 1100 6_1.tif 6_1_clip5.tif |
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gdal_translate -srcwin 7150 8000 1050 1150 6_1.tif 6_1_clip6.tif |
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pksetmask -co COMPRESS=LZW -t 0 -f -27 -t 0 -f -27 -t 0 -f -27 -t 0 -f -27 -t 0 -f -27 -t 0 -f -27 -m 6_1_clip1.tif -m 6_1_clip2.tif -m 6_1_clip3.tif -m 6_1_clip4.tif -m 6_1_clip5.tif -m 6_1_clip6.tif -i 6_1.tif -o 6_1_correct.tif |
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mv 6_1.tif 6_1_orig.tiff |
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mv 6_1_correct.tif 6_1.tif |
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rm 6_1_clip*.tif |
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# correction of a square box of 500 500 pixel. Set the value = to 179 as the near by pixel. |
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cd /mnt/data2/dem_variables/GMTED2010/tiles/mx75_grd_tif |
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gdal_translate -srcwin 10070 3830 500 500 2_1.tif 2_1_clip.tif |
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pksetmask -co COMPRESS=LZW -t 0 -f 179 -i 2_1.tif -m 2_1_clip.tif -o 2_1_correct.tif |
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mv 2_1.tif 2_1_orig.tiff |
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mv 2_1_correct.tif 2_1.tif |
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rm 2_1_clip.tif |
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# correction of a square in the caspian sea set value to -27 |
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cd /mnt/data2/dem_variables/GMTED2010/tiles/mx75_grd_tif |
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gdal_translate -srcwin 5719 5249 1050 1050 6_1.tif 6_1_clip1.tif |
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gdal_translate -srcwin 6200 6200 1050 550 6_1.tif 6_1_clip2.tif |
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gdal_translate -srcwin 6700 6700 1050 550 6_1.tif 6_1_clip3.tif |
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gdal_translate -srcwin 7150 7000 550 700 6_1.tif 6_1_clip4.tif |
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gdal_translate -srcwin 6700 7550 1050 1100 6_1.tif 6_1_clip5.tif |
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gdal_translate -srcwin 7150 8000 1050 1150 6_1.tif 6_1_clip6.tif |
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pksetmask -co COMPRESS=LZW -t 0 -f -27 -t 0 -f -27 -t 0 -f -27 -t 0 -f -27 -t 0 -f -27 -t 0 -f -27 -m 6_1_clip1.tif -m 6_1_clip2.tif -m 6_1_clip3.tif -m 6_1_clip4.tif -m 6_1_clip5.tif -m 6_1_clip6.tif -i 6_1.tif -o 6_1_correct.tif |
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mv 6_1.tif 6_1_orig.tiff |
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mv 6_1_correct.tif 6_1.tif |
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rm 6_1_clip*.tif |
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terrain/procedures/dem_variables/gmted2010_res_x10/sc2_class_treshold_percent.sh | ||
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# calculate altitude area percent above a specific treshold |
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# e.g 75% of class200 means that 75% of the pixels is >= 200 |
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# for this case the treshold is set every 100 meter |
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# geting the integer of the altitued / 100 |
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# for file in /mnt/data2/dem_variables/GMTED2010/tiles/mi75_grd_tif/*.tif ; do echo $file mi ; done | xargs -n 2 -P 25 bash /mnt/data2/dem_variables/GMTED2010/scripts/sc2_class_treshold_percent.sh |
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# rm /tmp/ramdisk/* ; for file in /mnt/data2/dem_variables/GMTED2010/tiles/mx75_grd_tif/*.tif ; do echo $file mx ; done | xargs -n 2 -P 25 bash /mnt/data2/dem_variables/GMTED2010/scripts/sc2_class_treshold_percent.sh |
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# to check |
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# ny=45 ; for n in `seq 1 9` ;do echo `gdallocationinfo -valonly altitude/class/5_1_class_tmp3.tif 2$n $ny` `gdallocationinfo -valonly tiles/mn75_grd_tif/5_1.tif 2$n $ny` ; done |
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export file=$1 |
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export mm=$2 |
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export filename=`basename $file .tif` |
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( |
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INDIR=/mnt/data2/dem_variables/GMTED2010/tiles/$mm"75_grd_tif" |
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OUTDIR=/mnt/data2/dem_variables/GMTED2010/altitude/class_$mm/class |
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echo calcualte altitude every 100 meter using the the Int16 factors for $file |
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oft-calc -X -ot Int16 $INDIR/$filename.tif $OUTDIR/../tmp/$filename"_class_tmp1.tif" &> /dev/null <<EOF |
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1 |
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#1 49 - 100 / |
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EOF |
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oft-calc -X -ot Int16 $OUTDIR/../tmp/$filename"_class_tmp1.tif" $OUTDIR/../tmp/$filename"_class_tmp2.tif" &> /dev/null <<EOF |
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1 |
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#1 100 * |
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EOF |
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rm $OUTDIR/../tmp/$filename"_class_tmp1.tif" |
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gdal_translate -co COMPRESS=LZW -co ZLEVEL=9 $OUTDIR/../tmp/$filename"_class_tmp2.tif" $OUTDIR/$filename"_class.tif" |
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rm $OUTDIR/../tmp/$filename"_class_tmp2.tif" |
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gdalinfo -mm $OUTDIR/$filename"_class.tif" | grep Computed | awk '{ gsub ("[=,]"," "); print int($(NF-1)), int($(NF))}' > $OUTDIR/../tmp/$filename"_min_max_"$mm.txt |
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echo min and max for $OUTDIR/../tmp/$filename"_min_max_"$mm.txt |
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for class in $(seq `awk '{ print $1}' $OUTDIR/../tmp/${filename}_min_max_${mm}.txt` 100 `awk '{ print $2}' $OUTDIR/../tmp/${filename}_min_max_${mm}.txt`) ; do |
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class_start=$class |
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class_end=$(awk '{ print $2}' $OUTDIR/../tmp/${filename}_min_max_${mm}.txt) |
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class_string=$(for class_unique in $(seq $class_start 100 $class_end ) ; do echo -n "-class $class_unique " ; done) |
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echo applaid the filter for the classes $class_string |
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pkfilter -dx 4 -dy 4 $class_string -f density -d 4 -i $OUTDIR/$filename"_class.tif" -o $OUTDIR/../class$class/$filename"_C"$class"Perc.tif" -co COMPRESS=LZW -co ZLEVEL=9 -ot Byte |
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done |
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) 2>&1 | tee /mnt/data2/dem_variables/GMTED2010/log/log_of_class_$mm"_"$filename".txt" |
terrain/procedures/dem_variables/gmted2010_res_x10/sc3_class_treshold_density_merge.sh | ||
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# for dir in `seq -500 100 8600` ; do echo $dir mi ; done | xargs -n 2 -P 1 bash /mnt/data2/dem_variables/GMTED2010/scripts/sc3_class_treshold_density_merge.sh |
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DIR=$1 |
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mm=$2 |
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INDIR=/mnt/data2/dem_variables/GMTED2010/altitude/class_mi/class${DIR} |
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INDIR_C=/mnt/data2/dem_variables/GMTED2010/altitude/class_mi/class |
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OUTDIR=/mnt/data2/dem_variables/GMTED2010/altitude/percent_class_${mm} |
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rm $OUTDIR/file_processed_sc3.txt # the file has ben processed by the script sc1_dem_treshold_percent.sh |
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for file in `ls $INDIR_C/*.tif` ; do |
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tile=`basename $file _class.tif` |
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if [ -f $INDIR/$tile"_C"$DIR"Perc.tif" ] ; then |
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echo the file $INDIR/$tile"_C"$DIR"Perc.tif" exist and will be merged as it is |
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echo $tile"_C"$DIR"Perc.tif" >> $OUTDIR/file_processed_sc3.txt # usefull to list file processed by script sc1, in case of delatio use this. |
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else |
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gdalinfo -mm /mnt/data2/dem_variables/GMTED2010/altitude/class_mi/class/$tile"_class.tif" | grep Computed | awk '{ gsub ("[=,]"," "); print int($(NF-1)), int($(NF))}' > /tmp/ramdisk/$filename"_min_max_"$mm.txt |
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min=`awk '{ print $1}' /tmp/ramdisk/${filename}_min_max_${mm}.txt` |
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max=`awk '{ print $2}' /tmp/ramdisk/${filename}_min_max_${mm}.txt` |
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rm -f /tmp/ramdisk/${filename}_min_max_${mm}.txt |
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echo $min and $max compare to $DIR |
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if [ $max -lt $DIR ] ; then |
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echo building the $INDIR/$tile"_C"$DIR"Perc.tif" with 0 value |
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pkgetmask -min 100 -max 101 -t 0 -ot Byte -i $INDIR_C/$tile"_class.tif" -co COMPRESS=LZW -o $INDIR/$tile"_C"$DIR"Perc.tif" |
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# gdalwarp -overwrite -tr 0.00833333333333 -0.00833333333333 -co COMPRESS=LZW -ot Byte $INDIR/$tile"_C"$DIR"Perc_tmp.tif" $INDIR/$tile"_C"$DIR"Perc.tif" |
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# rm $INDIR/$tile"_C"$DIR"Perc_tmp.tif" |
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fi |
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if [ $min -gt $DIR ] ; then |
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echo building the $INDIR/$tile"_C"$DIR"Perc.tif" with 100 value |
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pkgetmask -min 100 -max 101 -t 0 -f 100 -ot Byte -co COMPRESS=LZW -i $INDIR_C/$tile"_class.tif" -o $INDIR/$tile"_C"$DIR"Perc.tif" |
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# gdalwarp -overwrite -tr 0.00833333333333 -0.00833333333333 -co COMPRESS=LZW -ot Byte $INDIR/$tile"_C"$DIR"Perc_tmp.tif" $INDIR/$tile"_C"$DIR"Perc.tif" |
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# rm $INDIR/$tile"_C"$DIR"Perc_tmp.tif" |
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fi |
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fi |
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done |
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exit |
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gdal_merge.py -co COMPRESS=LZW -ps -0.008333333333330 -0.008333333333330 -ot Byte -o $OUTDIR/perc_$DIR.tif $INDIR/Smoothed_N*E*_C$DIR"Perc.tif" $INDIR/Smoothed_N*W*_C$DIR"Perc.tif" $INDIR/Smoothed_S*E*_C$DIR"Perc.tif" $INDIR/Smoothed_S*W*_C$DIR"Perc.tif" |
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terrain/procedures/dem_variables/gmted2010_res_x10/wget.sh | ||
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# seq 2001 2012 | xargs -n 1 -P 10 bash /mnt/data/jetzlab/Data/environ/global/MODIS/wget.sh |
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# echo 2012 | xargs -n 1 -P 10 bash /mnt/data/jetzlab/Data/environ/global/MODIS/wget.sh |
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YEAR=$1 |
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OUTDIR=/mnt/data/jetzlab/Data/environ/global/MODIS/MCD12Q1/051/$YEAR |
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# get the file list from the ftp |
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wget -O - http://e4ftl01.cr.usgs.gov/MOTA/MCD12Q1.051/$YEAR.01.01/ > $OUTDIR/list_$YEAR.txt |
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# manipulate to get just the file name |
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grep hdf $OUTDIR/list_$YEAR.txt | grep -v xml | awk '{ gsub("[\"]", " ") ; print $10 }' > $OUTDIR/list_hdf_$YEAR.txt |
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# starting the downloding procedure and tif conversion. |
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for file in `cat $OUTDIR/list_hdf_$YEAR.txt` ; do |
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filename=`basename $file .hdf` |
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LD_PRELOAD=/usr/local/lib/vsipreload.so gdal_translate -co COMPRESS=LZW HDF4_EOS:EOS_GRID:"\"""/vsicurl/http://e4ftl01.cr.usgs.gov/MOTA/MCD12Q1.051/$YEAR.01.01/${file}""\"":MOD12Q1:Land_Cover_Type_1 $OUTDIR/$filename.tif |
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rm $OUTDIR/$filename.tif.aux.xml |
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done |
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# merge all the data |
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gdal_merge.py -o $OUTDIR/../MCD12Q1_051_$YEAR"_tmp".tif $(ls $OUTDIR/*.tif) |
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oft-calc -inv $OUTDIR/../MCD12Q1_051_$YEAR"_tmp".tif $OUTDIR/../MCD12Q1_051_$YEAR"_tmp2".tif <<EOF |
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1 |
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#1 254 > 0 #1 ? |
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EOF |
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gdal_translate -co COMPRESS=LZW $OUTDIR/../MCD12Q1_051_$YEAR"_tmp2".tif $OUTDIR/../MCD12Q1_051_$YEAR.tif |
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$OUTDIR/../MCD12Q1_051_$YEAR"_wgs84_tmp.tif" |
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gdalwarp -rn -multi -co COMPRESS=LZW -t_srs EPSG:4326 $OUTDIR/../MCD12Q1_051_$YEAR.tif $OUTDIR/../MCD12Q1_051_$YEAR"_wgs84_tmp.tif" |
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gdal_translate -co COMPRESS=LZW $OUTDIR/../MCD12Q1_051_$YEAR"_wgs84_tmp.tif" $OUTDIR/../MCD12Q1_051_$YEAR"_wgs84.tif" |
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rm $OUTDIR/../M*tm*.tif |
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terrain/procedures/dem_variables/panoram90_res_x10/sc1_wget_panoramas.sh | ||
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# get the file list from the ftp |
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INDIR=/mnt/data2/dem_variables/dem_panoramas/tiles |
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cd $INDIR |
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# wget http://www.viewfinderpanoramas.org/Coverage%20map%20viewfinderpanoramas_org3.htm |
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# mv Coverage\ map\ viewfinderpanoramas_org3.htm $INDIR/../geo_file/list_zip.txt |
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# grep "zip" $INDIR/../geo_file/list_zip.txt | awk '{ print $NF }' | awk '{ gsub("href=\"","") ; gsub("\"","") ; print }' | sort -k 1,1 | uniq > $INDIR/../geo_file/list_zip_clean.txt |
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# cd zip_files |
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# # the list_zip_clean.txt contain ANTDEM3 antartich dem so |
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# # wget only dem3 lines |
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# for file in `grep dem3 $INDIR/../geo_file/list_zip_clean.txt ` ; do echo $file ; done | xargs -n 1 -P 20 wget -m $1 |
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# unzip and trasform to tif |
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# ls $INDIR/zip_files/*.zip | xargs -n 1 -P 14 bash -c $' |
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# file=$1 |
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# # save the standard error and in a file for later use in the loop |
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# unzip -o -d /mnt/data2/dem_variables/dem_panoramas/tiles/ $file &> /mnt/data2/dem_variables/dem_panoramas/tiles/zip_files/listzip$$.txt |
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# for f_hgt in $(grep inflating /mnt/data2/dem_variables/dem_panoramas/tiles/zip_files/listzip$$.txt | awk \'{print $2 }\') ; do |
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# f_name_hgt=`basename $f_hgt .hgt` |
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31 |
# d_name=`dirname $f_hgt` |
|
32 |
|
|
33 |
# gdal_translate -co COMPRESS=LZW $f_hgt $d_name/$f_name_hgt.tif |
|
34 |
# rm -f $f_hgt |
|
35 |
# done |
|
36 |
|
|
37 |
# rm /mnt/data2/dem_variables/dem_panoramas/tiles/zip_files/listzip$$.txt |
|
38 |
# ' _ |
|
39 |
|
|
40 |
|
|
41 |
# in order to restrict the searching path |
|
42 |
# mkdir $INDIR/tilesNE |
|
43 |
# mkdir $INDIR/tilesNW |
|
44 |
# mkdir $INDIR/tilesSE |
|
45 |
# mkdir $INDIR/tilesSW |
|
46 |
|
|
47 |
# mv $INDIR/*/N*E*.tif $INDIR/tilesNE |
|
48 |
# mv $INDIR/*/N*W*.tif $INDIR/tilesNW |
|
49 |
# mv $INDIR/*/S*E*.tif $INDIR/tilesSE |
|
50 |
# mv $INDIR/*/S*W*.tif $INDIR/tilesSW |
|
51 |
|
|
52 |
|
|
53 |
# create a vrt filie |
|
54 |
|
|
55 |
# gdalbuildvrt -overwrite $INDIR/tilesNE/tilesNE.vrt $INDIR/tilesNE/*.tif |
|
56 |
# gdalbuildvrt -overwrite $INDIR/tilesNW/tilesNW.vrt $INDIR/tilesNW/*.tif |
|
57 |
|
|
58 |
# gdalbuildvrt -overwrite $INDIR/tilesSE/tilesSE.vrt $INDIR/tilesSE/*.tif |
|
59 |
# gdalbuildvrt -overwrite $INDIR/tilesSW/tilesSW.vrt $INDIR/tilesSW/*.tif |
|
60 |
|
|
61 |
# mkdir /tmp/ramdisk; chmod 777 /tmp/ramdisk |
|
62 |
# mount -t tmpfs -o size=10000M tmpfs /tmp/ramdisk |
|
63 |
|
|
64 |
ls /mnt/data2/dem_variables/resol_x10/tif/Smoothed_N*E*.tif | xargs -n 1 -P 30 bash -c $' |
|
65 |
|
|
66 |
file=$1 |
|
67 |
filename=`basename $file .tif` |
|
68 |
gdal_translate -projwin $(getCorners4Gtranslate $file) -co COMPRESS=LZW /mnt/data2/dem_variables/dem_panoramas/tiles/tilesNE/tilesNE.vrt /tmp/ramdisk/$filename"_tmp.tif" |
|
69 |
if [ -f /tmp/ramdisk/$filename"_tmp.tif" ] ; then |
|
70 |
pkreclass -co COMPRESS=LZW -c -32768 -r 0 -i /tmp/ramdisk/$filename"_tmp.tif" -o /mnt/data2/dem_variables/dem_panoramas/tiles_merged/$filename.tif |
|
71 |
rm -f /tmp/ramdisk/$filename"_tmp.tif" |
|
72 |
fi |
|
73 |
|
|
74 |
' _ |
|
75 |
|
|
76 |
|
|
77 |
|
|
78 |
ls /mnt/data2/dem_variables/resol_x10/tif/Smoothed_N*W*.tif | xargs -n 1 -P 30 bash -c $' |
|
79 |
|
|
80 |
file=$1 |
|
81 |
filename=`basename $file .tif` |
|
82 |
gdal_translate -projwin $(getCorners4Gtranslate $file) -co COMPRESS=LZW /mnt/data2/dem_variables/dem_panoramas/tiles/tilesNW/tilesNW.vrt /tmp/ramdisk/$filename"_tmp.tif" |
|
83 |
if [ -f /tmp/ramdisk/$filename"_tmp.tif" ] ; then |
|
84 |
pkreclass -co COMPRESS=LZW -c -32768 -r 0 -i /tmp/ramdisk/$filename"_tmp.tif" -o /mnt/data2/dem_variables/dem_panoramas/tiles_merged/$filename.tif |
|
85 |
rm -f /tmp/ramdisk/$filename"_tmp.tif" |
|
86 |
fi |
|
87 |
|
|
88 |
' _ |
|
89 |
|
|
90 |
ls /mnt/data2/dem_variables/resol_x10/tif/Smoothed_S*E*.tif | xargs -n 1 -P 30 bash -c $' |
|
91 |
|
|
92 |
file=$1 |
|
93 |
filename=`basename $file .tif` |
|
94 |
gdal_translate -projwin $(getCorners4Gtranslate $file) -co COMPRESS=LZW /mnt/data2/dem_variables/dem_panoramas/tiles/tilesSE/tilesSE.vrt /tmp/ramdisk/$filename"_tmp.tif" |
|
95 |
if [ -f /tmp/ramdisk/$filename"_tmp.tif" ] ; then |
|
96 |
pkreclass -co COMPRESS=LZW -c -32768 -r 0 -i /tmp/ramdisk/$filename"_tmp.tif" -o /mnt/data2/dem_variables/dem_panoramas/tiles_merged/$filename.tif |
|
97 |
rm -f /tmp/ramdisk/$filename"_tmp.tif" |
|
98 |
fi |
|
99 |
|
|
100 |
' _ |
|
101 |
|
|
102 |
ls /mnt/data2/dem_variables/resol_x10/tif/Smoothed_S*W*.tif | xargs -n 1 -P 30 bash -c $' |
|
103 |
|
|
104 |
file=$1 |
|
105 |
filename=`basename $file .tif` |
|
106 |
gdal_translate -projwin $(getCorners4Gtranslate $file) -co COMPRESS=LZW /mnt/data2/dem_variables/dem_panoramas/tiles/tilesSW/tilesSW.vrt /tmp/ramdisk/$filename"_tmp.tif" |
|
107 |
if [ -f /tmp/ramdisk/$filename"_tmp.tif" ] ; then |
|
108 |
pkreclass -co COMPRESS=LZW -c -32768 -r 0 -i /tmp/ramdisk/$filename"_tmp.tif" -o /mnt/data2/dem_variables/dem_panoramas/tiles_merged/$filename.tif |
|
109 |
rm -f /tmp/ramdisk/$filename"_tmp.tif" |
|
110 |
fi |
|
111 |
|
|
112 |
' _ |
|
113 |
|
terrain/procedures/dem_variables/panoram90_res_x10/sc2_dem_merge.sh | ||
---|---|---|
1 |
# calculate different variables for the dem |
|
2 |
# for dir1 in altitude ; do for dir2 in stdev ; do echo $dir1/$dir2 ; done ; done | xargs -n 1 -P 5 bash /mnt/data2/dem_variables/scripts/sc2_dem_merge.sh |
|
3 |
# for dir1 in altitude slope tri tpi roughness ; do for dir2 in max mean median min stdev; do echo $dir1/$dir2 ; done ; done | xargs -n 1 -P 12 bash /mnt/data2/dem_variables/scripts/sc2_dem_merge.sh |
|
4 |
|
|
5 |
|
|
6 |
OUTDIR=/mnt/data2/dem_variables |
|
7 |
|
|
8 |
DIR=$1 |
|
9 |
dir1=$(echo ${DIR%/*}) # cancel the part after / |
|
10 |
dir2=$(echo ${DIR#*/}) # cancel the part before / |
|
11 |
|
|
12 |
|
|
13 |
if [ $dir1 = altitude ] ; then type=Int16 ; fi |
|
14 |
if [ $dir1 = aspect ] ; then type=Int16 ; fi |
|
15 |
if [ $dir1 = slope ] ; then type=Byte ; fi |
|
16 |
if [ $dir1 = tri ] ; then type=Int16 ; fi |
|
17 |
if [ $dir1 = tpi ] ; then type=Int16 ; fi |
|
18 |
if [ $dir1 = roughness ] ; then type=Int16 ; fi |
|
19 |
|
|
20 |
if [ $dir1 != aspect ]; then |
|
21 |
|
|
22 |
echo processing merging tiles in $dir1 |
|
23 |
|
|
24 |
rm -f $OUTDIR/$DIR/$dir1"_"$dir2.tif |
|
25 |
rm -f $OUTDIR/$DIR/$dir1"_"$dir2"_NW".tif |
|
26 |
rm -f $OUTDIR/$DIR/$dir1"_"$dir2"_NE".tif |
|
27 |
rm -f $OUTDIR/$DIR/$dir1"_"$dir2"_SW".tif |
|
28 |
rm -f $OUTDIR/$DIR/$dir1"_"$dir2"_SE".tif |
|
29 |
|
|
30 |
gdal_merge.py -o $OUTDIR/$DIR/$dir1"_"$dir2"_NW".tif -ot $type -co COMPRESS=LZW $OUTDIR/$DIR/tiles/Smoothed_N*W*.tif |
|
31 |
gdal_merge.py -o $OUTDIR/$DIR/$dir1"_"$dir2"_NE".tif -ot $type -co COMPRESS=LZW $OUTDIR/$DIR/tiles/Smoothed_N*E*.tif |
|
32 |
gdal_merge.py -o $OUTDIR/$DIR/$dir1"_"$dir2"_SW".tif -ot $type -co COMPRESS=LZW $OUTDIR/$DIR/tiles/Smoothed_S*W*.tif |
|
33 |
gdal_merge.py -o $OUTDIR/$DIR/$dir1"_"$dir2"_SE".tif -ot $type -co COMPRESS=LZW $OUTDIR/$DIR/tiles/Smoothed_S*E*.tif |
|
34 |
|
|
35 |
rm -f $OUTDIR/$DIR/$dir1"_"$dir2.tif |
|
36 |
|
|
37 |
gdal_merge.py -o $OUTDIR/$DIR/$dir1"_"$dir2.tif -ot $type -co COMPRESS=LZW $OUTDIR/$DIR/$dir1"_"$dir2"_NW".tif $OUTDIR/$DIR/$dir1"_"$dir2"_NE".tif $OUTDIR/$DIR/$dir1"_"$dir2"_SW".tif $OUTDIR/$DIR/$dir1"_"$dir2"_SE".tif |
|
38 |
|
|
39 |
rm -f $OUTDIR/$DIR/$dir1"_"$dir2"_NW".tif |
|
40 |
rm -f $OUTDIR/$DIR/$dir1"_"$dir2"_NE".tif |
|
41 |
rm -f $OUTDIR/$DIR/$dir1"_"$dir2"_SW".tif |
|
42 |
rm -f $OUTDIR/$DIR/$dir1"_"$dir2"_SE".tif |
|
43 |
|
|
44 |
else # just applaied to the aspect variables |
|
45 |
|
|
46 |
echo processing merging tiles for the different aspect variables in $dir1 |
|
47 |
|
|
48 |
for aspect_var in "_sin_t10k" "_cos_t10k" "_Ew_t10k" "_Nw_t10k" ; do |
|
49 |
|
|
50 |
rm -f $OUTDIR/$DIR/$dir1"_"$dir2"_NW"$aspect_var.tif |
|
51 |
rm -f $OUTDIR/$DIR/$dir1"_"$dir2"_NE"$aspect_var.tif |
|
52 |
rm -f $OUTDIR/$DIR/$dir1"_"$dir2"_SW"$aspect_var.tif |
|
53 |
rm -f $OUTDIR/$DIR/$dir1"_"$dir2"_SE"$aspect_var.tif |
|
54 |
|
|
55 |
gdal_merge.py -o $OUTDIR/$DIR/$dir1"_"$dir2"_NW"$aspect_var.tif -ot $type -co COMPRESS=LZW $OUTDIR/$DIR/tiles/Smoothed_N*W*$aspect_var.tif |
|
56 |
gdal_merge.py -o $OUTDIR/$DIR/$dir1"_"$dir2"_NE"$aspect_var.tif -ot $type -co COMPRESS=LZW $OUTDIR/$DIR/tiles/Smoothed_N*E*$aspect_var.tif |
|
57 |
gdal_merge.py -o $OUTDIR/$DIR/$dir1"_"$dir2"_SW"$aspect_var.tif -ot $type -co COMPRESS=LZW $OUTDIR/$DIR/tiles/Smoothed_S*W*$aspect_var.tif |
|
58 |
gdal_merge.py -o $OUTDIR/$DIR/$dir1"_"$dir2"_SE"$aspect_var.tif -ot $type -co COMPRESS=LZW $OUTDIR/$DIR/tiles/Smoothed_S*E*$aspect_var.tif |
|
59 |
|
|
60 |
rm -f $OUTDIR/$DIR/$dir1"_"$dir2$aspect_var.tif |
|
61 |
|
|
62 |
gdal_merge.py -o $OUTDIR/$DIR/$dir1"_"$dir2$aspect_var.tif -ot $type -co COMPRESS=LZW $OUTDIR/$DIR/$dir1"_"$dir2"_NW"$aspect_var.tif $OUTDIR/$DIR/$dir1"_"$dir2"_NE"$aspect_var.tif $OUTDIR/$DIR/$dir1"_"$dir2"_SW"$aspect_var.tif $OUTDIR/$DIR/$dir1"_"$dir2"_SE"$aspect_var.tif |
|
63 |
|
|
64 |
rm -f $OUTDIR/$DIR/$dir1"_"$dir2"_NW"$aspect_var.tif |
|
65 |
rm -f $OUTDIR/$DIR/$dir1"_"$dir2"_NE"$aspect_var.tif |
|
66 |
rm -f $OUTDIR/$DIR/$dir1"_"$dir2"_SW"$aspect_var.tif |
|
67 |
rm -f $OUTDIR/$DIR/$dir1"_"$dir2"_SE"$aspect_var.tif |
|
68 |
|
|
69 |
done |
|
70 |
|
|
71 |
fi |
|
72 |
|
|
73 |
|
|
74 |
|
terrain/procedures/dem_variables/panoram90_res_x10/sc2_dem_variables.sh | ||
---|---|---|
1 |
# variables derived from the dem following commands in http://www.gdal.org/gdaldem.html#gdaldem_slope |
|
2 |
# to check ls tif/Smoothed*.tif | xargs -n 1 -P 30 bash -c $' gdalinfo -mm $1 |grep Max | awk \'{ gsub("[=,]", " ") ; print $3,$4 }\' ' _ |
|
3 |
|
|
4 |
|
|
5 |
# find /mnt/data2/dem_variables/dem_panoramas/{altitude,aspect,roughness,slope,tpi,tri} -name *.tif | xargs -n 1 -P 10 rm ; |
|
6 |
|
|
7 |
# ls /mnt/data2/dem_variables/dem_panoramas/tiles_merged/Smoothed_*.tif | head | xargs -n 1 -P 30 bash /mnt/data2/dem_variables/dem_panoramas/scripts2/sc2_dem_variables.sh |
|
8 |
|
|
9 |
|
|
10 |
export OUTDIR=/mnt/data2/dem_variables/dem_panoramas |
|
11 |
export file=$1 |
|
12 |
export filename=`basename $file .tif` |
|
13 |
|
|
14 |
( |
|
15 |
|
|
16 |
echo altitude variables with file $OUTDIR/tiles_merged/$filename.tif |
|
17 |
|
|
18 |
# median |
|
19 |
pkfilter -m -32768 -dx 10 -dy 10 -f median -d 10 -i $OUTDIR/tiles_merged/$filename.tif -o $OUTDIR/altitude/median/tiles/$filename.tif -co COMPRESS=LZW -ot Int16 |
|
20 |
# stdev |
|
21 |
pkfilter -m -32768 -dx 10 -dy 10 -f var -d 10 -i $OUTDIR/tiles_merged/$filename.tif -o /tmp/ramdisk/tmp_$filename.tif -ot Int32 # max 1552385.000 sqrt(1245.947) |
|
22 |
gdal_calc.py -A /tmp/ramdisk/tmp_$filename.tif --calc="sqrt(A)" --type Int16 --overwrite --outfile $OUTDIR/altitude/stdev/tiles/$filename.tif |
|
23 |
rm -f /tmp/ramdisk/tmp_$filename.tif |
|
24 |
# min |
|
25 |
pkfilter -m -32768 -dx 10 -dy 10 -f min -d 10 -i $OUTDIR/tiles_merged/$filename.tif -o $OUTDIR/altitude/min/tiles/$filename.tif -co COMPRESS=LZW -ot Int16 |
|
26 |
# max |
|
27 |
pkfilter -m -32768 -dx 10 -dy 10 -f max -d 10 -i $OUTDIR/tiles_merged/$filename.tif -o $OUTDIR/altitude/max/tiles/$filename.tif -co COMPRESS=LZW -ot Int16 |
|
28 |
# mean |
|
29 |
pkfilter -m -32768 -dx 10 -dy 10 -f mean -d 10 -i $OUTDIR/tiles_merged/$filename.tif -o $OUTDIR/altitude/mean/tiles/$filename.tif -co COMPRESS=LZW -ot Int16 |
|
30 |
|
|
31 |
# starting to use gdaldem to compute variables. Gdaldem use -9999 as no data. |
|
32 |
|
|
33 |
echo slope with file $OUTDIR/tiles_merged/$filename.tif |
|
34 |
gdaldem slope -s 111120 -co COMPRESS=LZW $OUTDIR/tiles_merged/$filename.tif $OUTDIR/slope/tiles/$filename.tif # -s to consider xy in degree and z in meters |
|
35 |
# slope median |
|
36 |
pkfilter -m -9999 -dx 10 -dy 10 -f median -d 10 -i $OUTDIR/slope/tiles/$filename.tif -o $OUTDIR/slope/median/tiles/$filename.tif -co COMPRESS=LZW -ot Byte |
|
37 |
# slope stdev |
|
38 |
pkfilter -m -9999 -dx 10 -dy 10 -f var -d 10 -i $OUTDIR/slope/tiles/$filename.tif -o /tmp/ramdisk/tmp_$filename.tif -ot Int32 |
|
39 |
gdal_calc.py -A /tmp/ramdisk/tmp_$filename.tif --calc="sqrt(A)" --type Int16 --overwrite --outfile $OUTDIR/slope/stdev/tiles/$filename.tif |
|
40 |
rm -f /tmp/ramdisk/tmp_$filename.tif |
|
41 |
# slope min |
|
42 |
pkfilter -m -9999 -dx 10 -dy 10 -f min -d 10 -i $OUTDIR/slope/tiles/$filename.tif -o $OUTDIR/slope/min/tiles/$filename.tif -co COMPRESS=LZW -ot Byte |
|
43 |
# slope max |
|
44 |
pkfilter -m -9999 -dx 10 -dy 10 -f max -d 10 -i $OUTDIR/slope/tiles/$filename.tif -o $OUTDIR/slope/max/tiles/$filename.tif -co COMPRESS=LZW -ot Byte |
|
45 |
# slope mean |
|
46 |
pkfilter -m -9999 -dx 10 -dy 10 -f mean -d 10 -i $OUTDIR/slope/tiles/$filename.tif -o $OUTDIR/slope/mean/tiles/$filename.tif -co COMPRESS=LZW -ot Byte |
|
47 |
|
|
48 |
# rm -f $OUTDIR/slope/tiles/$filename.tif |
|
49 |
|
|
50 |
echo generate a Terrain Ruggedness Index TRI with file $file |
|
51 |
gdaldem TRI -co COMPRESS=LZW $OUTDIR/tiles_merged/$filename.tif $OUTDIR/tri/tiles/$filename.tif |
|
52 |
# tri median |
|
53 |
pkfilter -m -9999 -dx 10 -dy 10 -f median -d 10 -i $OUTDIR/tri/tiles/$filename.tif -o $OUTDIR/tri/median/tiles/$filename.tif -co COMPRESS=LZW -ot Int16 |
|
54 |
# tri stdev |
|
55 |
pkfilter -m -9999 -dx 10 -dy 10 -f var -d 10 -i $OUTDIR/tri/tiles/$filename.tif -o /tmp/ramdisk/tmp_$filename.tif |
|
56 |
gdal_calc.py -A /tmp/ramdisk/tmp_$filename.tif --calc="sqrt(A)" --type Int16 --overwrite --outfile $OUTDIR/tri/stdev/tiles/$filename.tif |
|
57 |
rm -f /tmp/ramdisk/tmp_$filename.tif |
|
58 |
# tri min |
|
59 |
pkfilter -m -9999 -dx 10 -dy 10 -f min -d 10 -i $OUTDIR/tri/tiles/$filename.tif -o $OUTDIR/tri/min/tiles/$filename.tif -co COMPRESS=LZW -ot Int16 |
|
60 |
# tri max |
|
61 |
pkfilter -m -9999 -dx 10 -dy 10 -f max -d 10 -i $OUTDIR/tri/tiles/$filename.tif -o $OUTDIR/tri/max/tiles/$filename.tif -co COMPRESS=LZW -ot Int16 |
|
62 |
# tri mean |
|
63 |
pkfilter -m -9999 -dx 10 -dy 10 -f mean -d 10 -i $OUTDIR/tri/tiles/$filename.tif -o $OUTDIR/tri/mean/tiles/$filename.tif -co COMPRESS=LZW -ot Int16 |
|
64 |
|
|
65 |
# rm -f $OUTDIR/tri/tiles/$filename.tif |
|
66 |
|
|
67 |
|
|
68 |
echo generate a Topographic Position Index TPI with file $OUTDIR/tiles_merged/$filename.tif |
|
69 |
|
|
70 |
gdaldem TPI -co COMPRESS=LZW $OUTDIR/tiles_merged/$filename.tif $OUTDIR/tpi/tiles/$filename.tif # tpi has negative number |
|
71 |
|
|
72 |
oft-calc -ot Float32 $OUTDIR/tpi/tiles/$filename.tif $OUTDIR/tpi/tiles/$filename"_t10.tif" &> /dev/null <<EOF |
|
73 |
1 |
|
74 |
#1 10 * |
|
75 |
EOF |
|
76 |
|
|
77 |
# tpi median |
|
78 |
pkfilter -m -9999 -dx 10 -dy 10 -f median -d 10 -i $OUTDIR/tpi/tiles/$filename"_t10.tif" -o $OUTDIR/tpi/median/tiles/$filename.tif -co COMPRESS=LZW -ot Int16 |
|
79 |
echo tpi stdev |
|
80 |
pkfilter -m -9999 -dx 10 -dy 10 -f var -d 10 -i $OUTDIR/tpi/tiles/$filename"_t10.tif" -o /tmp/ramdisk/tmp_$filename.tif |
|
81 |
gdal_calc.py -A /tmp/ramdisk/tmp_$filename.tif --calc="sqrt(A)" --type Int32 --overwrite --outfile $OUTDIR/tpi/stdev/tiles/$filename.tif |
|
82 |
rm -f /tmp/ramdisk/tmp_$filename.tif |
|
83 |
# tpi min |
|
84 |
pkfilter -m -9999 -dx 10 -dy 10 -f min -d 10 -i $OUTDIR/tpi/tiles/$filename"_t10.tif" -o $OUTDIR/tpi/min/tiles/$filename.tif -co COMPRESS=LZW -ot Int16 |
|
85 |
# tpi max |
|
86 |
pkfilter -m -9999 -dx 10 -dy 10 -f max -d 10 -i $OUTDIR/tpi/tiles/$filename"_t10.tif" -o $OUTDIR/tpi/max/tiles/$filename.tif -co COMPRESS=LZW -ot Int16 |
|
87 |
# tpi mean |
|
88 |
pkfilter -m -9999 -dx 10 -dy 10 -f mean -d 10 -i $OUTDIR/tpi/tiles/$filename"_t10.tif" -o $OUTDIR/tpi/mean/tiles/$filename.tif -co COMPRESS=LZW -ot Int16 |
|
89 |
|
|
90 |
|
|
91 |
echo generate roughness with file $OUTDIR/tiles_merged/$filename.tif |
|
92 |
|
|
93 |
gdaldem roughness -co COMPRESS=LZW $OUTDIR/tiles_merged/$filename.tif $OUTDIR/roughness/tiles/$filename.tif |
|
94 |
|
|
95 |
# roughness median |
|
96 |
pkfilter -m -9999 -dx 10 -dy 10 -f median -d 10 -i $OUTDIR/roughness/tiles/$filename.tif -o $OUTDIR/roughness/median/tiles/$filename.tif -co COMPRESS=LZW -ot Int16 |
|
97 |
echo roughness stdev |
|
98 |
pkfilter -m -9999 -dx 10 -dy 10 -f var -d 10 -i $OUTDIR/roughness/tiles/$filename.tif -o /tmp/ramdisk/tmp_$filename.tif |
|
99 |
gdal_calc.py -A /tmp/ramdisk/tmp_$filename.tif --calc="sqrt(A)" --type Int32 --overwrite --outfile $OUTDIR/roughness/stdev/tiles/$filename.tif |
|
100 |
rm -f /tmp/ramdisk/tmp_$filename.tif |
|
101 |
# roughness min |
|
102 |
pkfilter -m -9999 -dx 10 -dy 10 -f min -d 10 -i $OUTDIR/roughness/tiles/$filename.tif -o $OUTDIR/roughness/min/tiles/$filename.tif -co COMPRESS=LZW -ot Int16 |
|
103 |
# roughness max |
|
104 |
pkfilter -m -9999 -dx 10 -dy 10 -f max -d 10 -i $OUTDIR/roughness/tiles/$filename.tif -o $OUTDIR/roughness/max/tiles/$filename.tif -co COMPRESS=LZW -ot Int16 |
|
105 |
# roughness mean |
|
106 |
pkfilter -m -9999 -dx 10 -dy 10 -f mean -d 10 -i $OUTDIR/roughness/tiles/$filename.tif -o $OUTDIR/roughness/mean/tiles/$filename.tif -co COMPRESS=LZW -ot Int16 |
|
107 |
|
|
108 |
# rm -f $OUTDIR/roughness/tiles/$filename.tif |
|
109 |
|
|
110 |
|
|
111 |
|
|
112 |
echo aspect with file $OUTDIR/tiles_merged/$filename.tif |
|
113 |
|
|
114 |
gdaldem aspect -zero_for_flat -co COMPRESS=LZW $OUTDIR/tiles_merged/$filename.tif $OUTDIR/aspect/tiles/$filename.tif |
|
115 |
|
|
116 |
# r1 aspect , r2 slope |
|
117 |
|
|
118 |
gdal_calc.py --NoDataValue -9999 -A $OUTDIR/aspect/tiles/$filename.tif --calc="(sin(A))" --outfile $OUTDIR/aspect/tiles/$filename"_sin.tif" --overwrite --type Float32 |
|
119 |
gdal_calc.py --NoDataValue -9999 -A $OUTDIR/aspect/tiles/$filename.tif --calc="(cos(A))" --outfile $OUTDIR/aspect/tiles/$filename"_cos.tif" --overwrite --type Float32 |
|
120 |
|
|
121 |
gdal_calc.py --NoDataValue -9999 -A $OUTDIR/slope/tiles/$filename.tif -B $OUTDIR/aspect/tiles/$filename"_sin.tif" --calc="((sin(A))*B)" --outfile $OUTDIR/aspect/tiles/$filename"_Ew.tif" --overwrite --type Float32 |
|
122 |
gdal_calc.py --NoDataValue -9999 -A $OUTDIR/slope/tiles/$filename.tif -B $OUTDIR/aspect/tiles/$filename"_cos.tif" --calc="((sin(A))*B)" --outfile $OUTDIR/aspect/tiles/$filename"_Nw.tif" --overwrite --type Float32 |
|
123 |
|
|
124 |
echo aspect sin cos Ew Nw median |
|
125 |
# sin |
|
126 |
pkfilter -m -9999 -dx 10 -dy 10 -f median -d 10 -i $OUTDIR/aspect/tiles/$filename"_sin.tif" -o $OUTDIR/aspect/median/tiles/$filename"_sin_f.tif" -co COMPRESS=LZW -ot Float32 |
|
127 |
oft-calc -ot Int16 $OUTDIR/aspect/median/tiles/$filename"_sin_f.tif" /tmp/ramdisk/$filename"_sin_t10k_tmp.tif" &> /dev/null <<EOF |
|
128 |
1 |
|
129 |
#1 10000 * |
|
130 |
EOF |
|
131 |
gdal_translate -co COMPRESS=LZW -ot Int16 /tmp/ramdisk/$filename"_sin_t10k_tmp.tif" $OUTDIR/aspect/median/tiles/$filename"_sin_t10k.tif" |
|
132 |
rm /tmp/ramdisk/$filename"_sin_t10k_tmp.tif" |
|
133 |
# cos |
|
134 |
pkfilter -m -9999 -dx 10 -dy 10 -f median -d 10 -i $OUTDIR/aspect/tiles/$filename"_cos.tif" -o $OUTDIR/aspect/median/tiles/$filename"_cos_f.tif" -co COMPRESS=LZW -ot Float32 |
|
135 |
oft-calc -ot Int16 $OUTDIR/aspect/median/tiles/$filename"_cos_f.tif" /tmp/ramdisk/$filename"_cos_t10k_tmp.tif" &> /dev/null <<EOF |
|
136 |
1 |
|
137 |
#1 10000 * |
|
138 |
EOF |
|
139 |
gdal_translate -co COMPRESS=LZW -ot Int16 /tmp/ramdisk/$filename"_cos_t10k_tmp.tif" $OUTDIR/aspect/median/tiles/$filename"_cos_t10k.tif" |
|
140 |
rm /tmp/ramdisk/$filename"_cos_t10k_tmp.tif" |
|
141 |
# Ew |
|
142 |
pkfilter -m -9999 -dx 10 -dy 10 -f median -d 10 -i $OUTDIR/aspect/tiles/$filename"_Ew.tif" -o $OUTDIR/aspect/median/tiles/$filename"_Ew_f.tif" -co COMPRESS=LZW -ot Float32 |
|
143 |
oft-calc -ot Int16 $OUTDIR/aspect/median/tiles/$filename"_Ew_f.tif" /tmp/ramdisk/$filename"_Ew_t10k_tmp.tif" &> /dev/null <<EOF |
|
144 |
1 |
|
145 |
#1 10000 * |
|
146 |
EOF |
|
147 |
gdal_translate -co COMPRESS=LZW -ot Int16 /tmp/ramdisk/$filename"_Ew_t10k_tmp.tif" $OUTDIR/aspect/median/tiles/$filename"_Ew_t10k.tif" |
|
148 |
rm /tmp/ramdisk/$filename"_Ew_t10k_tmp.tif" |
|
149 |
# Nw |
|
150 |
pkfilter -m -9999 -dx 10 -dy 10 -f median -d 10 -i $OUTDIR/aspect/tiles/$filename"_Nw.tif" -o $OUTDIR/aspect/median/tiles/$filename"_Nw_f.tif" -co COMPRESS=LZW -ot Float32 |
|
151 |
oft-calc -ot Int16 $OUTDIR/aspect/median/tiles/$filename"_Nw_f.tif" /tmp/ramdisk/$filename"_Nw_t10k_tmp.tif" &> /dev/null <<EOF |
|
152 |
1 |
|
153 |
#1 10000 * |
|
154 |
EOF |
|
155 |
gdal_translate -co COMPRESS=LZW -ot Int16 /tmp/ramdisk/$filename"_Nw_t10k_tmp.tif" $OUTDIR/aspect/median/tiles/$filename"_Nw_t10k.tif" |
|
156 |
rm /tmp/ramdisk/$filename"_Nw_t10k_tmp.tif" |
|
157 |
|
|
158 |
|
|
159 |
echo aspect sin cos Ew Nw mean |
|
160 |
# sin |
|
161 |
pkfilter -m -9999 -dx 10 -dy 10 -f mean -d 10 -i $OUTDIR/aspect/tiles/$filename"_sin.tif" -o $OUTDIR/aspect/mean/tiles/$filename"_sin_f.tif" -co COMPRESS=LZW -ot Float32 |
|
162 |
oft-calc -ot Int16 $OUTDIR/aspect/mean/tiles/$filename"_sin_f.tif" /tmp/ramdisk/$filename"_sin_t10k_tmp.tif" &> /dev/null <<EOF |
|
163 |
1 |
|
164 |
#1 10000 * |
|
165 |
EOF |
|
166 |
gdal_translate -co COMPRESS=LZW -ot Int16 /tmp/ramdisk/$filename"_sin_t10k_tmp.tif" $OUTDIR/aspect/mean/tiles/$filename"_sin_t10k.tif" |
|
167 |
rm /tmp/ramdisk/$filename"_sin_t10k_tmp.tif" |
|
168 |
# cos |
|
169 |
pkfilter -m -9999 -dx 10 -dy 10 -f mean -d 10 -i $OUTDIR/aspect/tiles/$filename"_cos.tif" -o $OUTDIR/aspect/mean/tiles/$filename"_cos_f.tif" -co COMPRESS=LZW -ot Float32 |
|
170 |
oft-calc -ot Int16 $OUTDIR/aspect/mean/tiles/$filename"_cos_f.tif" /tmp/ramdisk/$filename"_cos_t10k_tmp.tif" &> /dev/null <<EOF |
|
171 |
1 |
|
172 |
#1 10000 * |
|
173 |
EOF |
|
174 |
gdal_translate -co COMPRESS=LZW -ot Int16 /tmp/ramdisk/$filename"_cos_t10k_tmp.tif" $OUTDIR/aspect/mean/tiles/$filename"_cos_t10k.tif" |
|
175 |
rm /tmp/ramdisk/$filename"_cos_t10k_tmp.tif" |
|
176 |
# Ew |
|
177 |
pkfilter -m -9999 -dx 10 -dy 10 -f mean -d 10 -i $OUTDIR/aspect/tiles/$filename"_Ew.tif" -o $OUTDIR/aspect/mean/tiles/$filename"_Ew_f.tif" -co COMPRESS=LZW -ot Float32 |
|
178 |
oft-calc -ot Int16 $OUTDIR/aspect/mean/tiles/$filename"_Ew_f.tif" /tmp/ramdisk/$filename"_Ew_t10k_tmp.tif" &> /dev/null <<EOF |
|
179 |
1 |
|
180 |
#1 10000 * |
|
181 |
EOF |
|
182 |
gdal_translate -co COMPRESS=LZW -ot Int16 /tmp/ramdisk/$filename"_Ew_t10k_tmp.tif" $OUTDIR/aspect/mean/tiles/$filename"_Ew_t10k.tif" |
|
183 |
rm /tmp/ramdisk/$filename"_Ew_t10k_tmp.tif" |
|
184 |
# Nw |
|
185 |
pkfilter -m -9999 -dx 10 -dy 10 -f mean -d 10 -i $OUTDIR/aspect/tiles/$filename"_Nw.tif" -o $OUTDIR/aspect/mean/tiles/$filename"_Nw_f.tif" -co COMPRESS=LZW -ot Float32 |
|
186 |
oft-calc -ot Int16 $OUTDIR/aspect/mean/tiles/$filename"_Nw_f.tif" /tmp/ramdisk/$filename"_Nw_t10k_tmp.tif" &> /dev/null <<EOF |
|
187 |
1 |
|
188 |
#1 10000 * |
|
189 |
EOF |
|
190 |
gdal_translate -co COMPRESS=LZW -ot Int16 /tmp/ramdisk/$filename"_Nw_t10k_tmp.tif" &> /dev/null <<EOF |
|
191 |
1 |
|
192 |
#1 10000 * |
|
193 |
EOF |
|
194 |
gdal_translate -co COMPRESS=LZW -ot Int16 /tmp/ramdisk/$filename"_Nw_t10k_tmp.tif" $OUTDIR/aspect/mean/tiles/$filename"_Nw_t10k.tif" |
|
195 |
rm /tmp/ramdisk/$filename"_Nw_t10k_tmp.tif" |
|
196 |
|
|
197 |
echo aspect sin cos Ew Nw max |
|
198 |
# sin |
|
199 |
pkfilter -m -9999 -dx 10 -dy 10 -f max -d 10 -i $OUTDIR/aspect/tiles/$filename"_sin.tif" -o $OUTDIR/aspect/max/tiles/$filename"_sin_f.tif" -co COMPRESS=LZW -ot Float32 |
|
200 |
oft-calc -ot Int16 $OUTDIR/aspect/max/tiles/$filename"_sin_f.tif" /tmp/ramdisk/$filename"_sin_t10k_tmp.tif" &> /dev/null <<EOF |
|
201 |
1 |
|
202 |
#1 10000 * |
|
203 |
EOF |
|
204 |
gdal_translate -co COMPRESS=LZW -ot Int16 /tmp/ramdisk/$filename"_sin_t10k_tmp.tif" $OUTDIR/aspect/max/tiles/$filename"_sin_t10k.tif" |
|
205 |
rm /tmp/ramdisk/$filename"_sin_t10k_tmp.tif" |
|
206 |
# cos |
|
207 |
pkfilter -m -9999 -dx 10 -dy 10 -f max -d 10 -i $OUTDIR/aspect/tiles/$filename"_cos.tif" -o $OUTDIR/aspect/max/tiles/$filename"_cos_f.tif" -co COMPRESS=LZW -ot Float32 |
|
208 |
oft-calc -ot Int16 $OUTDIR/aspect/max/tiles/$filename"_cos_f.tif" /tmp/ramdisk/$filename"_cos_t10k_tmp.tif" &> /dev/null <<EOF |
|
209 |
1 |
|
210 |
#1 10000 * |
|
211 |
EOF |
|
212 |
gdal_translate -co COMPRESS=LZW -ot Int16 /tmp/ramdisk/$filename"_cos_t10k_tmp.tif" $OUTDIR/aspect/max/tiles/$filename"_cos_t10k.tif" |
|
213 |
rm /tmp/ramdisk/$filename"_cos_t10k_tmp.tif" |
|
214 |
# Ew |
|
215 |
pkfilter -m -9999 -dx 10 -dy 10 -f max -d 10 -i $OUTDIR/aspect/tiles/$filename"_Ew.tif" -o $OUTDIR/aspect/max/tiles/$filename"_Ew_f.tif" -co COMPRESS=LZW -ot Float32 |
|
216 |
oft-calc -ot Int16 $OUTDIR/aspect/max/tiles/$filename"_Ew_f.tif" /tmp/ramdisk/$filename"_Ew_t10k_tmp.tif" &> /dev/null <<EOF |
|
217 |
1 |
|
218 |
#1 10000 * |
|
219 |
EOF |
|
220 |
gdal_translate -co COMPRESS=LZW -ot Int16 /tmp/ramdisk/$filename"_Ew_t10k_tmp.tif" $OUTDIR/aspect/max/tiles/$filename"_Ew_t10k.tif" |
|
221 |
rm /tmp/ramdisk/$filename"_Ew_t10k_tmp.tif" |
|
222 |
# Nw |
|
223 |
pkfilter -m -9999 -dx 10 -dy 10 -f max -d 10 -i $OUTDIR/aspect/tiles/$filename"_Nw.tif" -o $OUTDIR/aspect/max/tiles/$filename"_Nw_f.tif" -co COMPRESS=LZW -ot Float32 |
|
224 |
oft-calc -ot Int16 $OUTDIR/aspect/max/tiles/$filename"_Nw_f.tif" /tmp/ramdisk/$filename"_Nw_t10k_tmp.tif" &> /dev/null <<EOF |
|
225 |
1 |
|
226 |
#1 10000 * |
|
227 |
EOF |
|
228 |
gdal_translate -co COMPRESS=LZW -ot Int16 /tmp/ramdisk/$filename"_Nw_t10k_tmp.tif" $OUTDIR/aspect/max/tiles/$filename"_Nw_t10k.tif" |
|
229 |
rm /tmp/ramdisk/$filename"_Nw_t10k_tmp.tif" |
|
230 |
|
|
231 |
echo aspect sin cos Ew Nw min |
|
232 |
# sin |
|
233 |
pkfilter -m -9999 -dx 10 -dy 10 -f min -d 10 -i $OUTDIR/aspect/tiles/$filename"_sin.tif" -o $OUTDIR/aspect/min/tiles/$filename"_sin_f.tif" -co COMPRESS=LZW -ot Float32 |
|
234 |
oft-calc -ot Int16 $OUTDIR/aspect/min/tiles/$filename"_sin_f.tif" /tmp/ramdisk/$filename"_sin_t10k_tmp.tif" &> /dev/null <<EOF |
|
235 |
1 |
|
236 |
#1 10000 * |
|
237 |
EOF |
|
238 |
gdal_translate -co COMPRESS=LZW -ot Int16 /tmp/ramdisk/$filename"_sin_t10k_tmp.tif" $OUTDIR/aspect/min/tiles/$filename"_sin_t10k.tif" |
|
239 |
rm /tmp/ramdisk/$filename"_sin_t10k_tmp.tif" |
|
240 |
# cos |
|
241 |
pkfilter -m -9999 -dx 10 -dy 10 -f min -d 10 -i $OUTDIR/aspect/tiles/$filename"_cos.tif" -o $OUTDIR/aspect/min/tiles/$filename"_cos_f.tif" -co COMPRESS=LZW -ot Float32 |
|
242 |
oft-calc -ot Int16 $OUTDIR/aspect/min/tiles/$filename"_cos_f.tif" /tmp/ramdisk/$filename"_cos_t10k_tmp.tif" &> /dev/null <<EOF |
|
243 |
1 |
|
244 |
#1 10000 * |
|
245 |
EOF |
|
246 |
gdal_translate -co COMPRESS=LZW -ot Int16 /tmp/ramdisk/$filename"_cos_t10k_tmp.tif" $OUTDIR/aspect/min/tiles/$filename"_cos_t10k.tif" |
|
247 |
rm /tmp/ramdisk/$filename"_cos_t10k_tmp.tif" |
|
248 |
# Ew |
|
249 |
pkfilter -m -9999 -dx 10 -dy 10 -f min -d 10 -i $OUTDIR/aspect/tiles/$filename"_Ew.tif" -o $OUTDIR/aspect/min/tiles/$filename"_Ew_f.tif" -co COMPRESS=LZW -ot Float32 |
|
250 |
oft-calc -ot Int16 $OUTDIR/aspect/min/tiles/$filename"_Ew_f.tif" /tmp/ramdisk/$filename"_Ew_t10k_tmp.tif" &> /dev/null <<EOF |
|
251 |
1 |
|
252 |
#1 10000 * |
|
253 |
EOF |
|
254 |
gdal_translate -co COMPRESS=LZW -ot Int16 /tmp/ramdisk/$filename"_Ew_t10k_tmp.tif" $OUTDIR/aspect/min/tiles/$filename"_Ew_t10k.tif" |
|
255 |
rm /tmp/ramdisk/$filename"_Ew_t10k_tmp.tif" |
|
256 |
# Nw |
|
257 |
pkfilter -m -9999 -dx 10 -dy 10 -f min -d 10 -i $OUTDIR/aspect/tiles/$filename"_Nw.tif" -o $OUTDIR/aspect/min/tiles/$filename"_Nw_f.tif" -co COMPRESS=LZW -ot Float32 |
|
258 |
oft-calc -ot Int16 $OUTDIR/aspect/min/tiles/$filename"_Nw_f.tif" /tmp/ramdisk/$filename"_Nw_t10k_tmp.tif" &> /dev/null <<EOF |
|
259 |
1 |
|
260 |
#1 10000 * |
|
261 |
EOF |
|
262 |
gdal_translate -co COMPRESS=LZW -ot Int16 /tmp/ramdisk/$filename"_Nw_t10k_tmp.tif" $OUTDIR/aspect/min/tiles/$filename"_Nw_t10k.tif" |
|
263 |
rm /tmp/ramdisk/$filename"_Nw_t10k_tmp.tif" |
|
264 |
|
|
265 |
echo aspect sin cos Ew Nw stdev |
|
266 |
# stdev |
|
267 |
pkfilter -m -9999 -dx 10 -dy 10 -f var -d 10 -i $OUTDIR/aspect/tiles/$filename"_sin.tif" -o $OUTDIR/aspect/stdev/tiles/$filename"_sin_f.tif" -co COMPRESS=LZW -ot Float32 |
|
268 |
gdal_calc.py -A $OUTDIR/aspect/stdev/tiles/$filename"_sin_f.tif" --calc="(sqrt(A))*10000" --type Int16 --overwrite --outfile /tmp/ramdisk/$filename"_sin_t10k_tmp.tif" |
|
269 |
gdal_translate -co COMPRESS=LZW -ot Int16 /tmp/ramdisk/$filename"_sin_t10k_tmp.tif" $OUTDIR/aspect/stdev/tiles/$filename"_sin_t10k.tif" |
|
270 |
rm /tmp/ramdisk/$filename"_sin_t10k_tmp.tif" |
|
271 |
# cos |
|
272 |
pkfilter -m -9999 -dx 10 -dy 10 -f var -d 10 -i $OUTDIR/aspect/tiles/$filename"_cos.tif" -o $OUTDIR/aspect/stdev/tiles/$filename"_cos_f.tif" -co COMPRESS=LZW -ot Float32 |
|
273 |
gdal_calc.py -A $OUTDIR/aspect/stdev/tiles/$filename"_cos_f.tif" --calc="(sqrt(A))*10000" --type Int16 --overwrite --outfile /tmp/ramdisk/$filename"_cos_t10k_tmp.tif" |
|
274 |
gdal_translate -co COMPRESS=LZW -ot Int16 /tmp/ramdisk/$filename"_cos_t10k_tmp.tif" $OUTDIR/aspect/stdev/tiles/$filename"_cos_t10k.tif" |
|
275 |
rm /tmp/ramdisk/$filename"_cos_t10k_tmp.tif" |
|
276 |
# Ew |
|
277 |
pkfilter -m -9999 -dx 10 -dy 10 -f var -d 10 -i $OUTDIR/aspect/tiles/$filename"_Ew.tif" -o $OUTDIR/aspect/stdev/tiles/$filename"_Ew_f.tif" -co COMPRESS=LZW -ot Float32 |
|
278 |
gdal_calc.py -A $OUTDIR/aspect/stdev/tiles/$filename"_Ew_f.tif" --calc="(sqrt(A))*10000" --type Int16 --overwrite --outfile /tmp/ramdisk/$filename"_Ew_t10k_tmp.tif" |
|
279 |
gdal_translate -co COMPRESS=LZW -ot Int16 /tmp/ramdisk/$filename"_Ew_t10k_tmp.tif" $OUTDIR/aspect/stdev/tiles/$filename"_Ew_t10k.tif" |
|
280 |
rm /tmp/ramdisk/$filename"_Ew_t10k_tmp.tif" |
|
281 |
# Nw |
|
282 |
pkfilter -m -9999 -dx 10 -dy 10 -f var -d 10 -i $OUTDIR/aspect/tiles/$filename"_Nw.tif" -o $OUTDIR/aspect/stdev/tiles/$filename"_Nw_f.tif" -co COMPRESS=LZW -ot Float32 |
|
283 |
gdal_calc.py -A $OUTDIR/aspect/stdev/tiles/$filename"_Nw_f.tif" --calc="(sqrt(A))*10000" --type Int16 --overwrite --outfile /tmp/ramdisk/$filename"_Nw_t10k_tmp.tif" |
|
284 |
gdal_translate -co COMPRESS=LZW -ot Int16 /tmp/ramdisk/$filename"_Nw_t10k_tmp.tif" $OUTDIR/aspect/stdev/tiles/$filename"_Nw_t10k.tif" |
|
285 |
rm /tmp/ramdisk/$filename"_Nw_t10k_tmp.tif" |
|
286 |
|
|
287 |
) 2>&1 | tee /mnt/data2/dem_variables/dem_panoramas/log.txt |
terrain/procedures/dem_variables/panoram90_res_x10/sc3_dem_merge.sh | ||
---|---|---|
1 |
# calculate different variables for the dem |
|
2 |
# for dir1 in altitude ; do for dir2 in stdev ; do echo $dir1/$dir2 ; done ; done | xargs -n 1 -P 5 bash /mnt/data2/dem_variables/scripts/sc2_dem_merge.sh |
|
3 |
# for dir1 in aspect altitude slope tri tpi roughness ; do for dir2 in max mean median min stdev; do echo $dir1/$dir2 ; done ; done | xargs -n 1 -P 12 bash /mnt/data2/dem_variables/dem_panoramas/scripts2/sc3_dem_merge.sh |
|
4 |
|
|
5 |
OUTDIR=/mnt/data2/dem_variables/dem_panoramas |
|
6 |
|
|
7 |
DIR=$1 |
|
8 |
dir1=$(echo ${DIR%/*}) # cancel the part after / |
|
9 |
dir2=$(echo ${DIR#*/}) # cancel the part before / |
|
10 |
|
|
11 |
|
|
12 |
if [ $dir1 = altitude ] ; then type=Int16 ; fi |
|
13 |
if [ $dir1 = aspect ] ; then type=Int16 ; fi |
|
14 |
if [ $dir1 = slope ] ; then type=Byte ; fi |
|
15 |
if [ $dir1 = tri ] ; then type=Int16 ; fi |
|
16 |
if [ $dir1 = tpi ] ; then type=Int16 ; fi |
|
17 |
if [ $dir1 = roughness ] ; then type=Int16 ; fi |
|
18 |
|
|
19 |
if [ $dir1 != aspect ]; then |
|
20 |
|
|
21 |
echo processing merging tiles in $dir1 |
|
22 |
|
|
23 |
# rm -f $OUTDIR/$DIR/$dir1"_"$dir2.tif |
|
24 |
# rm -f $OUTDIR/$DIR/$dir1"_"$dir2"_NW".tif |
|
25 |
# rm -f $OUTDIR/$DIR/$dir1"_"$dir2"_NE".tif |
|
26 |
# rm -f $OUTDIR/$DIR/$dir1"_"$dir2"_SW".tif |
|
27 |
# rm -f $OUTDIR/$DIR/$dir1"_"$dir2"_SE".tif |
|
28 |
|
|
29 |
# gdal_merge.py -o $OUTDIR/$DIR/$dir1"_"$dir2"_NW".tif -ot $type -co COMPRESS=LZW $OUTDIR/$DIR/tiles/Smoothed_N*W*.tif |
|
30 |
# gdal_merge.py -o $OUTDIR/$DIR/$dir1"_"$dir2"_NE".tif -ot $type -co COMPRESS=LZW $OUTDIR/$DIR/tiles/Smoothed_N*E*.tif |
|
31 |
# gdal_merge.py -o $OUTDIR/$DIR/$dir1"_"$dir2"_SW".tif -ot $type -co COMPRESS=LZW $OUTDIR/$DIR/tiles/Smoothed_S*W*.tif |
|
32 |
# gdal_merge.py -o $OUTDIR/$DIR/$dir1"_"$dir2"_SE".tif -ot $type -co COMPRESS=LZW $OUTDIR/$DIR/tiles/Smoothed_S*E*.tif |
|
33 |
|
|
34 |
|
|
35 |
|
|
36 |
rm -f $OUTDIR/$DIR/$dir1"_"$dir2.tif |
|
37 |
|
|
38 |
gdal_merge.py -o $OUTDIR/$DIR/$dir1"_"$dir2.tif -ot $type -co COMPRESS=LZW $OUTDIR/$DIR/$dir1"_"$dir2"_NW".tif $OUTDIR/$DIR/$dir1"_"$dir2"_NE".tif $OUTDIR/$DIR/$dir1"_"$dir2"_SW".tif $OUTDIR/$DIR/$dir1"_"$dir2"_SE".tif |
|
39 |
|
|
40 |
rm -f $OUTDIR/$DIR/$dir1"_"$dir2"_NW".tif |
|
41 |
rm -f $OUTDIR/$DIR/$dir1"_"$dir2"_NE".tif |
|
42 |
rm -f $OUTDIR/$DIR/$dir1"_"$dir2"_SW".tif |
|
43 |
rm -f $OUTDIR/$DIR/$dir1"_"$dir2"_SE".tif |
|
44 |
|
|
45 |
else # just applaied to the aspect variables |
|
46 |
|
|
47 |
echo processing merging tiles for the different aspect variables in $dir1 |
|
48 |
|
|
49 |
for aspect_var in "_sin_t10k" "_cos_t10k" "_Ew_t10k" "_Nw_t10k" ; do |
|
50 |
|
|
51 |
rm -f $OUTDIR/$DIR/$dir1"_"$dir2"_NW"$aspect_var.tif |
|
52 |
rm -f $OUTDIR/$DIR/$dir1"_"$dir2"_NE"$aspect_var.tif |
|
53 |
rm -f $OUTDIR/$DIR/$dir1"_"$dir2"_SW"$aspect_var.tif |
|
54 |
rm -f $OUTDIR/$DIR/$dir1"_"$dir2"_SE"$aspect_var.tif |
|
55 |
|
|
56 |
gdal_merge.py -o $OUTDIR/$DIR/$dir1"_"$dir2"_NW"$aspect_var.tif -ot $type -co COMPRESS=LZW $OUTDIR/$DIR/tiles/Smoothed_N*W*$aspect_var.tif |
|
57 |
gdal_merge.py -o $OUTDIR/$DIR/$dir1"_"$dir2"_NE"$aspect_var.tif -ot $type -co COMPRESS=LZW $OUTDIR/$DIR/tiles/Smoothed_N*E*$aspect_var.tif |
|
58 |
gdal_merge.py -o $OUTDIR/$DIR/$dir1"_"$dir2"_SW"$aspect_var.tif -ot $type -co COMPRESS=LZW $OUTDIR/$DIR/tiles/Smoothed_S*W*$aspect_var.tif |
|
59 |
gdal_merge.py -o $OUTDIR/$DIR/$dir1"_"$dir2"_SE"$aspect_var.tif -ot $type -co COMPRESS=LZW $OUTDIR/$DIR/tiles/Smoothed_S*E*$aspect_var.tif |
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60 |
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|
61 |
rm -f $OUTDIR/$DIR/$dir1"_"$dir2$aspect_var.tif |
|
62 |
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|
63 |
gdal_merge.py -o $OUTDIR/$DIR/$dir1"_"$dir2$aspect_var.tif -ot $type -co COMPRESS=LZW $OUTDIR/$DIR/$dir1"_"$dir2"_NW"$aspect_var.tif $OUTDIR/$DIR/$dir1"_"$dir2"_NE"$aspect_var.tif $OUTDIR/$DIR/$dir1"_"$dir2"_SW"$aspect_var.tif $OUTDIR/$DIR/$dir1"_"$dir2"_SE"$aspect_var.tif |
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64 |
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|
65 |
rm -f $OUTDIR/$DIR/$dir1"_"$dir2"_NW"$aspect_var.tif |
|
66 |
rm -f $OUTDIR/$DIR/$dir1"_"$dir2"_NE"$aspect_var.tif |
|
67 |
rm -f $OUTDIR/$DIR/$dir1"_"$dir2"_SW"$aspect_var.tif |
|
68 |
rm -f $OUTDIR/$DIR/$dir1"_"$dir2"_SE"$aspect_var.tif |
|
69 |
|
|
70 |
done |
|
71 |
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|
72 |
fi |
|
73 |
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|
74 |
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|
75 |
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Also available in: Unified diff
first push for all the script used to create topographic variable