Revision e6262966
Added by Benoit Parmentier over 11 years ago
| climate/research/oregon/interpolation/master_script_temp.R | ||
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#STAGE 5: Output analyses: assessment of results for specific dates... |
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# |
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#AUTHOR: Benoit Parmentier |
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#DATE: 07/09/2013
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#DATE: 07/12/2013
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#PROJECT: NCEAS INPLANT: Environment and Organisms --TASK#363, TASK$568-- |
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stages_to_run<-c(0,2,3,4,5) #May decide on antoher strategy later on... |
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var<-"TMAX" # variable being interpolated |
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out_prefix<-"_365d_gam_day_lst_comb3_07092013" #User defined output prefix
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out_suffix<-"_OR_07092013"
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out_prefix<-"_365d_gwr_day_lst_comb3_part1_07122013" #User defined output prefix
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out_suffix<-"_OR_07122013"
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out_suffix_modis <-"_05302013" #use tiles produce previously |
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#interpolation_method<-c("gam_fusion","gam_CAI","gam_daily") #other otpions to be added later
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#interpolation_method<-c("gam_CAI") #other otpions to be added later
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#interpolation_method<-c("gam_fusion") #other otpions to be added later
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interpolation_method<-c("gam_daily") #other otpions to be added later
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#interpolation_method<-c("gam_daily") #other otpions to be added later
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#interpolation_method<-c("kriging_daily") #other otpions to be added later
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#interpolation_method<-c("gwr_daily") #other otpions to be added later
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interpolation_method<-c("gwr_daily") #other otpions to be added later
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#out_path <- paste("/home/parmentier/Data/IPLANT_project/Venezuela_interpolation/Venezuela_01142013/output_data",
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# out_prefix,"/",sep="") |
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#Models to run...this can be change for each run |
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#LC1: Evergreen/deciduous needleleaf trees |
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#Combination 3: for paper baseline=s(lat,lon)+s(elev) |
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list_models<-c("y_var ~ s(lat,lon) + s(elev_s)",
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"y_var ~ s(lat,lon) + s(elev_s) + s(N_w)", |
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"y_var ~ s(lat,lon) + s(elev_s) + s(E_w)", |
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"y_var ~ s(lat,lon) + s(elev_s) + s(LST)", |
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"y_var ~ s(lat,lon) + s(elev_s) + s(DISTOC)", |
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"y_var ~ s(lat,lon) + s(elev_s) + s(LC1)", |
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"y_var ~ s(lat,lon) + s(elev_s) + s(CANHGHT)", |
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"y_var ~ s(lat,lon) + s(elev_s) + s(LST) + ti(LST,LC1)", |
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"y_var ~ s(lat,lon) + s(elev_s) + s(LST) + ti(LST,CANHGHT)") |
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#list_models<-c("y_var ~ s(lat,lon) + s(elev_s)",
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# "y_var ~ s(lat,lon) + s(elev_s) + s(N_w)",
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# "y_var ~ s(lat,lon) + s(elev_s) + s(E_w)",
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# "y_var ~ s(lat,lon) + s(elev_s) + s(LST)",
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# "y_var ~ s(lat,lon) + s(elev_s) + s(DISTOC)",
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# "y_var ~ s(lat,lon) + s(elev_s) + s(LC1)",
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# "y_var ~ s(lat,lon) + s(elev_s) + s(CANHGHT)",
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# "y_var ~ s(lat,lon) + s(elev_s) + s(LST) + ti(LST,LC1)",
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# "y_var ~ s(lat,lon) + s(elev_s) + s(LST) + ti(LST,CANHGHT)")
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# list_models<-c("y_var ~ s(elev_s)",
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# "y_var ~ s(LST)", |
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# "y_var ~ s(lat,lon) + s(elev_s) + s(N_w,E_w) + s(LST) + ti(LC6,LST)", |
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# "y_var ~ s(lat,lon) + s(elev_s) + s(N_w,E_w) + s(LST) + s(DISTOC)") |
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#testing new combinations and tensor for paper |
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# list_models<-c("y_var ~ s(x,y)",
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# "y_var ~ s(x)+ s(y) + s(LST) + ti(x,y) + ti(x,y,LST)", |
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# "y_var ~ s(elev_s) + s(LST) + ti(elev_s,LST)", |
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# "y_var ~ s(lat) + s(lon) + s(LST)", |
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# "y_var ~ s(lat) + s(lon) + s(elev_s)+ ti(lat,lon) + ti(lat,lon,elev_s)", |
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# "y_var ~ s(lat,lon) + s(LST)", |
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# "y_var ~ s(lat,lon) + s(elev_s) + s(LST)", |
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# "y_var ~ s(x) + s(y) + s(elev_s) + ti(x,y) + ti(x,y,elev_s)") |
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#testing combination 3, part 1 for GWR day |
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list_models<-c("y_var ~ lat*lon + elev_s",
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"y_var ~ lat*lon + elev_s + N_w", |
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"y_var ~ lat*lon + elev_s + E_w") |
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#list_models<-c("y_var ~ lat*lon + elev_s",
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# "y_var ~ lat*lon + elev_s + N_w", |
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# "y_var ~ lat*lon + elev_s + E_w", |
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# "y_var ~ lat*lon + elev_s + LST", |
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# "y_var ~ lat*lon + elev_s + DISTOC", |
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# "y_var ~ lat*lon + elev_s + LC1", |
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# "y_var ~ lat*lon + elev_s + CANHGHT", |
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# "y_var ~ lat*lon + elev_s + LST + I(LST*LC1)", |
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# "y_var ~ lat*lon + elev_s + LST + I(LST*CANHGHT)") |
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#list_models<-c("y_var~ lat + lon + elev_",
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# "y_var~ I(lat*lon) + elev_s", |
Also available in: Unified diff
gwr day predictions for paper, testing covariate combination 3, part 1