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Revision f42722e7

Added by Benoit Parmentier over 11 years ago

master script, test run for NASA

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climate/research/oregon/interpolation/master_script_temp.R
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#STAGE 5: Output analyses: assessment of results for specific dates...
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#
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#AUTHOR: Benoit Parmentier
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#DATE: 07/17/2013
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#DATE: 07/18/2013
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#PROJECT: NCEAS INPLANT: Environment and Organisms --TASK#363, TASK$568--   


  		




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#stages_to_run<-c(1,2,3,4,5) #May decide on antoher strategy later on...


  		




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#stages_to_run<-c(0,2,3,4,5) #May decide on antoher strategy later on...


  		




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stages_to_run<-c(0,2,3,4,5) #MRun only raster fitting, prediction and assessemnt (providing lst averages, covar brick and met stations)


  		




  
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stages_to_run<-c(0,0,0,4,5) #MRun only raster fitting, prediction and assessemnt (providing lst averages, covar brick and met stations)


  		




  
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#If stage 2 is skipped then use previous covar object


  		




  
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covar_obj_file<-"/data/project/layers/commons/data_workflow/output_data_365d_gam_fus_lst_test_run_07172013/covar_obj__365d_gam_fus_lst_test_run_07172013.RData"


  		




  
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#If stage 3 is skipped then use previous met_stations object


  		




  
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met_stations_outfiles_obj_file<-"/data/project/layers/commons/data_workflow/output_data_365d_gam_fus_lst_test_run_07172013/met_stations_outfiles_obj_gam_fusion__365d_gam_fus_lst_test_run_07172013.RData"


  		




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var<-"TMAX" # variable being interpolated


  		




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out_prefix<-"_365d_gam_fus_lst_test_run_07172013"                #User defined output prefix


  		




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out_suffix<-"_OR_07172013"                                       #Regional suffix


  		




  
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out_prefix<-"_365d_gam_fus_lst_test_run_07182013"                #User defined output prefix


  		




  
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out_suffix<-"_OR_07182013"                                       #Regional suffix


  		




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out_suffix_modis <-"_05302013"                       #pattern to find tiles produced previously     


  		




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#interpolation_method<-c("gam_fusion","gam_CAI","gam_daily") #other otpions to be added later


  		




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buffer_dist<-0 #not in use yet, must change climatology step to make sure additional tiles are downloaded and LST averages


  		




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               #must also be calculated for neighbouring tiles.


  		




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#If stage 2 is skipped then use previous covar object


  		




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covar_obj_file<-"/data/project/layers/commons/data_workflow/output_data_365d_gam_fus_lst_test_run_07162013/covar_obj__365d_gam_fus_lst_test_run_07162013.RData"


  		




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#covar_names see stage 2


  		




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#If stage 3 is skipped then use previous met_stations object


  		




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met_stations_outfiles_obj_file<-"/data/project/layers/commons/data_workflow/output_data_365d_gam_fus_lst_test_run_07162013/met_stations_outfiles_obj_gam_fusion__365d_gam_fus_lst_test_run_07162013.RData"


  		




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#list_tiles_modis <- c("h11v08,h11v07,h12v07,h12v08,h10v07,h10v08") #tile for Venezuela and surrounding area


  		




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list_tiles_modis <- c("h08v04,h09v04") #tiles for Oregon


  		




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