initial commit stage 6 assessement of run automated

master script stage 2_3 changes in query to avoid duplication of climatology database queries

initial commit from stage 2_3 master script from Alberto

master script stage 4_5 changes to take into account climatology step existence and modifcations in storage

master script stage 4_5 from Alberto, initial commit

slidify presentation using input assessment figure table from stage 6

scaling up assessment function script part1 slight changes to mosacing

assessment part1 call to figure plot assessment debug for shapefiles not read in

integrating plotting call into assessement part1

plotting figures assessment debugging and checking output table