#

# ASTER GDEM1

#

# --- first do cleanup ---

# remove duplicate files (confirmed by diffing)

rm $ORGANISMS/DEM/asterGdem/ListOfEurasiaDropouts.txt

rm $ORGANISMS/DEM/asterGdem/BadFileCheckLogVulcanAfterNewFiles.txt

rm $ORGANISMS/DEM/asterGdem/BadFileCheckLogBeforeCorrection.txt

# remove misc trivial/obsolete scripts

rm $ORGANISMS/DEM/asterGdem/translateToImg.sh

rm $ORGANISMS/DEM/asterGdem/incorrectTilesJuly2011/replacedJuly4/copyDownTifs.sh

rm $ORGANISMS/DEM/asterGdem/incorrectTilesJuly2011/checkBadAsterGDEMFiles.sh

# remove file listings and/or gdalinfo output with insufficient context

rm $ORGANISMS/DEM/asterGdem/incorrectTilesJuly2011/BadFileCheckLogVulcanAfterNewFiles.txt

rm $ORGANISMS/DEM/asterGdem/incorrectTilesJuly2011/ListOfEurasiaDropouts.txt

rm $ORGANISMS/DEM/asterGdem/incorrectTilesJuly2011/BadFileCheckLogBeforeCorrection.txt

rm $ORGANISMS/DEM/asterGdem/incorrectTilesJuly2011/replacedJuly4/Juy4NumFiles.txt

rm $ORGANISMS/DEM/asterGdem/incorrectTilesJuly2011/replacedJuly4/July4NumFiles.txt

rm $ORGANISMS/DEM/asterGdem/incorrectTilesJuly2011/replacedJuly4/July4Files.txt

# remove now-empty directory

rmdir $ORGANISMS/DEM/asterGdem/incorrectTilesJuly2011/replacedJuly4

# remove reeves-generated ArcGIS aux/rrd files

find $ORGANISMS/DEM/asterGdem/ -name "*.aux" -exec rm {} \;

find $ORGANISMS/DEM/asterGdem/ -name "*.rrd" -exec rm {} \;

# remove gdal-generated metadata files

find $ORGANISMS/DEM/asterGdem/ -name "*.tif.aux.xml" -exec rm {} \;

find $ORGANISMS/DEM/asterGdem/ -name "*.dem.aux.xml" -exec rm {} \;

# remove img tiles (for which we have the original tifs in all cases)

rm $ORGANISMS/DEM/asterGdem/TilesBelowN59/*.{img,img.aux.xml}

# migrate Robinson R scripts

mv -i $ORGANISMS/DEM/asterGdem/R_files \

      $LAYERS/code/terrain/asterGdem

# migrate Robinson GDEM1 assessment docs (incl QGIS project files)

mkdir $LAYERS/experimental/terrain/gdem-v1

mv -i $ORGANISMS/DEM/asterGdem/*.ods \

      $LAYERS/experimental/terrain/gdem-v1/

find $ORGANISMS/DEM/asterGdem -name "*.qgs" -exec mv {} \

      $LAYERS/experimental/terrain/gdem-v1/ \;

# migrate remaining tree as the GDEM v1 dataset itself

mv $ORGANISMS/DEM/asterGdem \

   $LAYERS/data/terrain/dem-aster-gdem1-30m-orig

# migrate Nunokawa-clipped data -- first version

mkdir $LAYERS/data/terrain/dem-usgs-gtopo30-clipped-nunokawa-v1

find $ORGANISMS/DEM/usgsGTOPO30 -name "*_Clipped.dem" \

     -exec mv {} $LAYERS/data/terrain/dem-usgs-gtopo30-clipped-nunokawa-v1 \;

# migrate Nunokawa-clipped data -- second version

mv -i $ORGANISMS/DEM/Yuni/Data/GTOPO30 \

      $LAYERS/data/terrain/dem-usgs-gtopo30-clipped-nunokawa-v2

# migrate Robinson-clipped data

mkdir $LAYERS/data/terrain/dem-usgs-gtopo30-clipped-robinson

mv $ORGANISMS/DEM/asterGdem/N59to81_E20to59/e020n90/E020N90_clipped.dem \

   $LAYERS/data/terrain/dem-usgs-gtopo30-clipped-robinson/

mv $ORGANISMS/DEM/asterGdem/N59to81_E140to179/e140n90/E140N90_clipped.dem \

   $LAYERS/data/terrain/dem-usgs-gtopo30-clipped-robinson/

mv $ORGANISMS/DEM/asterGdem/N59to81_W140to101/w140n90/W140N90_clipped.dem \

   $LAYERS/data/terrain/dem-usgs-gtopo30-clipped-robinson/

mv $ORGANISMS/DEM/asterGdem/N59to81_E60to99/USGS_ErosDEM_N59to81E60to99/E060N90_clipped.dem \

   $LAYERS/data/terrain/dem-usgs-gtopo30-clipped-robinson/

mv $ORGANISMS/DEM/asterGdem/N59to81_W60to21/w060n90/W060N90_clipped.dem \

   $LAYERS/data/terrain/dem-usgs-gtopo30-clipped-robinson/

mv $ORGANISMS/DEM/asterGdem/N59to81_W100to61/w100n90/W100N90_clipped.dem \

   $LAYERS/data/terrain/dem-usgs-gtopo30-clipped-robinson/

mv $ORGANISMS/DEM/asterGdem/N59to81_E100to139/e100n90/E100N90_clipped.dem \

   $LAYERS/data/terrain/dem-usgs-gtopo30-clipped-robinson/

mv $ORGANISMS/DEM/asterGdem/N59to81_W180to141/w180n90/W180N90_clipped.dem \

   $LAYERS/data/terrain/dem-usgs-gtopo30-clipped-robinson/

mv $ORGANISMS/DEM/asterGdem/N59to81_W20toE19/w020n90/W020N90_clipped.dem \

   $LAYERS/data/terrain/dem-usgs-gtopo30-clipped-robinson/

# remove mysterious extra GeoTIFF (sans extension) with timestamp similar to

# the above, but that was mysteriously the same as the like-named

# clipped-nunokawa-v1 file (created months later)

rm $ORGANISMS/DEM/asterGdem/N59to81_E60to99/USGS_ErosDEM_N59to81E60to99/E060N90_Clipped

# remove Mac OS X file metadata cruft

find $ORGANISMS/DEM/usgsGTOPO30 -name ".DS_Store" -exec rm {} \;

find $ORGANISMS/DEM/usgsGTOPO30 -name "._*" -exec rm {} \;

# now migrate original (?) GTOPO30 data

# confirmed that we had identical copies of the above GTOPO DEM data

# # ---- bash code ---#

# for i in `find $ORGANISMS/DEM/asterGdem -name "*.DEM" -exec basename {} \;`

# do

#   diff -q `find $ORGANISMS/DEM/asterGdem -name $i` \

#           `find $LAYERS/data/terrain/dem-usgs-gtopo30 -name $i`

# done

# # ------------------#

# (and in fact manually confirmed that the containing directories themselves

#  were duplicated, albeit with different names)

# ...so remove the duplicates...

find $ORGANISMS/DEM/asterGdem -name "*.DEM" | sed 's/\/[EW].*//' | xargs -I+ rm -r +