moved everything into /trunk/ to create the standard svn layout, for use with tools that require this (eg. git-svn). IMPORTANT: do NOT do an `svn up`. instead, re-use your working copy's existing files with `svn switch` (http://svnbook.red-bean.com/en/1.6/svn.ref.svn.c.switch.html).
inputs/.TNRS/tnrs/tnrs.make: removed no longer needed end time, now that the total runtime is printed
inputs/.TNRS/tnrs/tnrs.make: print the total runtime using `time`
inputs/.TNRS/tnrs/tnrs.make: include the end time in addition to the start time so that the total runtime can be calculated
bin/tnrs_db: removed no longer used $wait flag (which caused tnrs_db to wait max_pause for new rows to be added), because tnrs_db is now invoked automatically after each import by the import_scrub target (in inputs/input.Makefile) and does not need to run as a daemon. note that when scrub is invoked, it is possible that a previous datasource's import has already scrubbed the names for this import, because tnrs_db runs until all rows in tnrs_input_name are scrubbed....
inputs/.TNRS/*/*.make: Only allow one instance of the script to be running at any time, by using new waitself
inputs/.TNRS/tnrs/tnrs.make: Fixed bug where need special handling to support being run as a .make script
inputs/.TNRS/tnrs/tnrs.make: Usage: Added tnrs_db's $wait flag
inputs/.TNRS/tnrs/tnrs.make: Fixed Usage message to use make, which is needed to set the PATH correctly
inputs/.TNRS/tnrs/tnrs.make: Removed unnecessary setting of $prefix, which now defaults to ""
inputs/.TNRS/tnrs/tnrs.make: Fixed bug where need to reference the log file path relative to the make script itself, because otherwise the log file would go in inputs/.TNRS/logs/tnrs.make.log.sql
inputs/.TNRS/tnrs/tnrs.make: Fixed bug where need to use just the basename of $0 as the log file name
inputs/.TNRS/tnrs/tnrs.make: Output the time at which it's run, so this is included in the log file
inputs/.TNRS/tnrs/tnrs.make: Moved log file to logs/tnrs.make.log.sql so it would automatically be synced along with the other import logs
inputs/.TNRS/tnrs/tnrs.make: Append to the log file instead of overwriting it, so that the TNRS scrubbing of each import's new taxonomic names can be included in one log file. Echo the command to the log file to identify separate runs.
inputs/.TNRS/tnrs/tnrs.make: Added log option which outputs to the terminal instead when set to ""
Added inputs/.TNRS/tnrs/tnrs.make to run tnrs_db on VegBIEN
