| 1 |
5080
|
aaronmk
|
#!/bin/bash
|
| 2 |
|
|
# Runs tnrs_db on VegBIEN
|
| 3 |
9518
|
aaronmk
|
# Usage: make inputs/.TNRS/tnrs/tnrs-remake [log=]
|
| 4 |
5080
|
aaronmk
|
|
| 5 |
7255
|
aaronmk
|
# Handle being run as a .make script
|
| 6 |
|
|
exec >&2
|
| 7 |
|
|
unset MAKEFLAGS MFLAGS
|
| 8 |
|
|
|
| 9 |
6067
|
aaronmk
|
selfDir="$(dirname -- "$0")"
|
| 10 |
6066
|
aaronmk
|
selfName="$(basename $0)"
|
| 11 |
|
|
|
| 12 |
7263
|
aaronmk
|
waitself "$0"
|
| 13 |
|
|
|
| 14 |
7064
|
aaronmk
|
. vegbien_dest
|
| 15 |
5080
|
aaronmk
|
|
| 16 |
5096
|
aaronmk
|
if test -n "${log=1}"; then # $log defaults to 1
|
| 17 |
6067
|
aaronmk
|
exec >>"$selfDir/logs/$selfName.log.sql" 2>&1
|
| 18 |
5096
|
aaronmk
|
fi
|
| 19 |
6052
|
aaronmk
|
|
| 20 |
9901
|
aaronmk
|
echo -n 'start time: '; date
|
| 21 |
9902
|
aaronmk
|
(set -x; time tnrs_db "$@")
|
