moved everything into /trunk/ to create the standard svn layout, for use with tools that require this (eg. git-svn). IMPORTANT: do NOT do an `svn up`. instead, re-use your working copy's existing files with `svn switch` (http://svnbook.red-bean.com/en/1.6/svn.ref.svn.c.switch.html).
schemas/vegbien.sql: sync_analytical_*_to_view(): Added datasource fkey to source.shortname so removing a datasource will also remove the corresponding rows in the analytical views
schemas/vegbien.sql: taxondetermination: Added back reference_id, which is different than the scoping source_id (reference_id was previously renamed to source_id in a bulk rename)
schemas/vegbien.sql: Allow multiple institutionCodes for each specimenreplicate by linking new sourcelist table many-to-many to source via sourcename (which is now a linking table)
schemas/vegbien.sql: Merged darwin_core into analytical_stem
schemas/vegbien.sql: Renamed taxonconcept.concept_source_id back to concept_reference_id
schemas/vegbien.ERD.mwb: Added projectcontributor, locationeventcontributor to ERD
schemas/vegbien.sql: Renamed reference -> source to make this table more broadly applicable, and because this now stores the datasource metadata
schemas/vegbien.sql: referencename: Scope it by top-level datasource, because institutionCodes (which map to this field) are not globally unique. This involves renaming the previous reference_id field, which was for the matched reference, to matched_reference_id, to allow a scoping reference_id field.
specimenreplicate: Made institution_id an fkey to referencename instead of party, to later be matched up with reference entries for each aggregator's subprovider
schemas/filter_ERD.csv: Display referencecontributor->party connection in ERD
schemas/vegbien.sql: Added threatened_taxonlabel derived table with generating view threatened_taxonlabel_view
schemas/vegbien.sql: place: Added canon_place_id
schemas/vegbien.sql: taxonlabel: Moved non-scoping fields to new taxonverbatim subclass table, which contains the component parts of the taxonlabel
schemas/filter_ERD.csv: Remove the methodtaxonclass.submethod_id fkey to taxonlabel, to make room in the ERD for additional taxon tables
schemas/vegbien.sql: Deleted taxonusage table per today's conference call, where it was decided that it was not needed
schemas/vegbien.sql: Renamed taxonconcept to taxonlabel per today's conference call, where it was decided that taxonconcept contained too many unrelated fields to be purely a taxon concept
schemas/vegbien.sql: Renamed plant* taxonomic tables -> taxon*, as part of the taxonomic schema refactoring at <https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/2012-10-03_conference_call#Taxonomic-schema-refactoring>
schemas/filter_ERD.csv: Changed the table with the visible fkey from plant* to taxon* to be plantstatus rather than plantusage, since it contains more core fields
schemas/filter_ERD.csv: Removed no longer used table taxonscope
schemas/filter_ERD.csv: taxonconcept inward fkeys: Removed not applicable taxon filtered table, since the fkey points in the opposite direction and thus is not part of this filter
schemas/vegbien.sql: Renamed taxonpath -> taxonconcept as part of taxonomic schema refactoring at <https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/2012-10-03_conference_call#Taxonomic-schema-refactoring>
schemas/filter_ERD.csv: Don't filter out fkeys from taxonpath to itself
schemas/vegbien.sql: Renamed plantconcept to taxonpath for consistency with DwC's Taxon category and to emphasize that the table stores taxonomic paths
schemas/vegbien.sql: Renamed plantname to taxon for consistency with DwC's Taxon category
schemas/filter_ERD.csv: Removed extraneous lines to improve readability. schemas/vegbien.ERD.mwb: Reconfigured elements to put only the most important ones in the core subset (the top page).
schemas/filter_ERD.csv: Removed no longer applicable specimenreplicate inheritance filters
schemas/filter_ERD.csv: Removed AUTO_INCREMENT because that is not added to any other tables
schemas/filter_ERD.csv: Add back taxondetermination->taxonoccurrence fkey because that has been replaced by a trigger in the SQL
VegBIEN: Fixing import issue related to duplicate entries in tables with children, where when a new table entry duplicates an existing entry, the 1:1 tables of that table and those tables' children are not merged, causing them to become orphaned. It is described in detail at <https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/Import_issues#Merging-duplicates-with-children>, including the rationale for this solution. Note that this is not a bug in column-based import, it applies to row-based import as well. This commit fixes the issue for specimenreplicate->taxonoccurrence.
filter_ERD.csv: Removed no longer needed references to role
filter_ERD.csv: Remove role fkeys
filter_ERD.csv: Remove fkeys to heavily-linked tables (reference, party)
Added schemas/filter_ERD.csv and use it when generating vegbien.my.sql
