bugfix: *.sql: public.source_by_shortname(): need to wrap it in a nested SELECT because Postgres incorrectly does not constant-fold (inline) it, leading to a slowdown when it is therefore run many times. this is done using the steps at wiki.vegpath.org/Postgres_queries#wrap-function-call-in-nested-SELECT .

added validation/aggregating/traits/BIEN2_traits/_archive/bien3_validations_traits_complete.sql from Brad's e-mail

validation/aggregating/*/*.sql, schemas/vegbien.sql, lib/runscripts/validations.pg.sql.run, inputs/bien2_traits/validations.sql: added _ to beginning of each view name so the validation views would sort at the top in the datasource's tables list. this will also make the validation result sets easily distinguishable from the data tables.

validation/aggregating/*/*.sql: renamed views to match the current naming scheme in the DB. these files still need to be kept up-to-date because there are some queries that haven't been implemented yet, and therefore exist only in these files, not the DB.

bugfix: validation/aggregating/traits/BIEN2_traits/bien3_validations_traits_original_mysql.VegCore.sql: added util to search_path so that IFNULL would link to util.ifnull()

validation/aggregating/traits/BIEN2_traits/bien3_validations_traits_original_mysql.VegCore.sql: added view names using the steps at wiki.vegpath.org/Aggregating_validations_refactoring#prepend-CREATE-VIEW

validation/aggregating/traits/BIEN2_traits/bien3_validations_traits_original_mysql.VegCore.sql: removed trailing whitespace

schemas/vegbien.sql, validation/aggregating/*/*.sql: renamed public_validation_* to plural public_validations_* since we refer to them as aggregating validation*s*

validation/aggregating/*/*.sql: use "" to preserve case in column aliases, so that they match the input queries

validation/aggregating/*/*.sql: use current_schema instead of a hardcoded datasource name or psql variable

validation/aggregating/*/*.sql: search_path: added public

validation/aggregating/*/*.sql: use the new type-specific validation schema names

validation/aggregating/*/*.sql: removed type-specific prefix from the view name, which is now part of the validation schema

validation/aggregating/traits/bien3_validations_traits_bien3.sql: include only records from the bien2_traits datasource, to ensure that the scope of all queries is limited to the datasource

validation/aggregating/*/*.sql (the output queries): added `SET search_path TO validation`

validation/aggregating/traits/bien3_validations_traits_bien3.sql: added CREATE VIEW prefixes using the steps at wiki.vegpath.org/Aggregating_validations_refactoring#prepend-CREATE-VIEW

validation/**: removed old versions of by=-tagged files. these were not renamed in the last commit because there were newer versions that they collided with. note that because , sorts before . , the newer version (with more ",name@inst" tags) was correctly renamed instead of the older version.

validation/**: removed by=... indicators so that we don't have to add an author name every time a file is changed. the author indicator is not needed now that both Brad's and my edits are open-source.

fix: validation/aggregating/traits/_archive/bien3_validations_traits_bien3.by=Brad@iPlant.sql: renamed to indicate that this is actually not Brad's original file, as the filename would seem to indicate

validation/aggregating/*.by=Brad@iPlant*: placed under version control, since these are now open-source

validation/**: removed svn:ignore exclusion of iPlant-owned files, since these are now open-source

fix: validation/aggregating/traits/_archive/bien3_validations_traits_bien3.by=Brad@iPlant,Aaron@UCSB,Brad@iPlant.sql: added missing .url extension

added validation/aggregating/traits/_archive/bien3_validations_traits_bien3.by=Brad@iPlant,Aaron@UCSB,Brad@iPlant.sql

validation/aggregating/traits/BIEN2_traits/_archive/bien3_validations_traits_original_mysql.by=Brad@iPlant,Aaron@UCSB,Brad@iPlant.sql.url: renamed to indicate that it's just by Brad (it was the other file, the output queries, that were created by both of us)

added validation/aggregating/traits/BIEN2_traits/_archive/bien3_validations_traits_original_mysql.by=Brad@iPlant,Aaron@UCSB,Brad@iPlant.sql.url

deleted validation/aggregating/traits/_archive/bien3_validations_traits_bien3.by=Brad@iPlant.sql.url@, since there is already a version without the trailing @

validation/aggregating/traits/BIEN2_traits/_archive/bien3_validations_traits_original.by=Brad@iPlant.sql.url: removed trailing (apparently, the escape for paths containing @ should only be used on the input path)

validation/aggregating/traits/bien3_validations_traits_bien3.by=Brad@iPlant.sql*: moved to _archive/

validation/aggregating/traits/BIEN2_traits/bien3_validations_traits_original.by=Brad@iPlant.sql*: moved to _archive/

added validation/aggregating/, containing folders for Brad's scripts (the scripts themselves cannot be in the repository because they are not UCSB-owned)