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# Date Author Comment
12239 02/16/2014 01:29 PM Aaron Marcuse-Kubitza

web/links/index.htm: updated to Firefox bookmarks: Redmine: added links to the REST API for exporting data. svn: added instructions for using svnsync to export a repository. PostgreSQL: removed duplicate pages that were linked for multiple versions of Postgres.

12180 02/13/2014 01:23 PM Aaron Marcuse-Kubitza

web/.phpPgAdmin/.htaccess: support linking to a function

12179 02/13/2014 01:08 PM Aaron Marcuse-Kubitza

web/.phpPgAdmin/.htaccess: support linking to the functions list

12178 02/13/2014 01:05 PM Aaron Marcuse-Kubitza

web/.phpPgAdmin/.htaccess: support linking to a view

12177 02/13/2014 12:58 PM Aaron Marcuse-Kubitza

web/.phpPgAdmin/.htaccess: allow linking directly to the views list of a schema

12175 02/13/2014 12:54 PM Aaron Marcuse-Kubitza

web/.phpPgAdmin/.htaccess: refactored to build the URL incrementally, extracting path components 1st->last, instead of handling each # of path components as a separate case (which was more rigid and created unnecessary duplication)

12173 02/13/2014 11:47 AM Aaron Marcuse-Kubitza

bugfix: web/.phpPgAdmin/.htaccess: path RewriteRules: need to go directly to the applicable tab, rather than going via redirect.php, because redirect.php will use the last selected tab, rather than the first tab for that section, leading to unexpected results when a non-default tab was previously selected

12111 02/07/2014 05:26 AM Aaron Marcuse-Kubitza

web/BIEN3: redirected to .wiki since the wiki homepage now contains the list of all BIEN3 components

12110 02/07/2014 05:26 AM Aaron Marcuse-Kubitza

web/links/index.htm: updated to Firefox bookmarks. Quick links: use bien3.vegpath.org to link to the main BIEN3 page

12109 02/07/2014 05:05 AM Aaron Marcuse-Kubitza

added web/BIEN3 symlink, with .bien3 case-insensitive alias

12019 02/02/2014 01:51 AM Aaron Marcuse-Kubitza

web/links/index.htm: updated to Firefox bookmarks: wake for network access: added link to pmset man page, which contains commands for setting "wake for network access" for all power sources. note that "automatic restart on power loss" also needs to be set for all power sources, because the computer will always be in UPS mode at the time of a power failure.

12012 01/26/2014 10:23 AM Aaron Marcuse-Kubitza

web/links/index.htm: updated to Firefox bookmarks: NCEAS: added link to phone list, which contains the Balboa Building maintenance numbers

12008 01/24/2014 04:38 PM Aaron Marcuse-Kubitza

web/links/index.htm: updated to Firefox bookmarks: svn: added steps to add a file containing (append to the path)

12007 01/23/2014 03:07 PM Aaron Marcuse-Kubitza

web/links/index.htm: updated to Firefox bookmarks: `mysql`: added commands to get interactive formatting (including echoed queries) when inputting from a file, and to get raw formatting when inputting from the console. git: added equivalent to `svn update`.

11989 01/22/2014 12:17 PM Aaron Marcuse-Kubitza

web/links/index.htm: updated to Firefox bookmarks: OS X 10.9 Mavericks upgrade: added links for whether to upgrade (conclusion: don't, it breaks existing programs)

11975 01/20/2014 02:23 PM Aaron Marcuse-Kubitza

web/links/index.htm: updated to Firefox bookmarks. git: added instructions to migrate from svn.

11974 01/20/2014 02:20 PM Aaron Marcuse-Kubitza

web/links/index.htm: updated to Firefox bookmarks. git: added instructions to migrate from svn.

11973 01/20/2014 12:01 PM Aaron Marcuse-Kubitza

web/links/index.htm: updated to Firefox bookmarks. added instructions for running `svn switch` after moving everything into /trunk/ (for us, use `svn switch --force https://code.nceas.ucsb.edu/code/projects/bien/trunk # runtime: <1 min`).

11972 01/20/2014 11:59 AM Aaron Marcuse-Kubitza

web/links/index.htm: updated to Firefox bookmarks. added instructions for running `svn switch` after moving everything into /trunk/ (for us, use `svn switch --force https://code.nceas.ucsb.edu/code/projects/bien/trunk # runtime: <1 min`).

11970 01/20/2014 11:33 AM Aaron Marcuse-Kubitza

moved everything into /trunk/ to create the standard svn layout, for use with tools that require this (eg. git-svn). IMPORTANT: do NOT do an `svn up`. instead, re-use your working copy's existing files with `svn switch` (http://svnbook.red-bean.com/en/1.6/svn.ref.svn.c.switch.html).

11968 01/18/2014 11:43 PM Aaron Marcuse-Kubitza

web/links/index.htm: updated to Firefox bookmarks. added links to the sPlot ERD. Dropbox: added information about a missing upgrade notification when you use the Dropbox client to look up a file on the Dropbox website.

11954 01/15/2014 08:36 AM Aaron Marcuse-Kubitza

web/links/index.htm: updated to Firefox bookmarks. Quick links: removed page descriptions, which clutter up the quick links list.

11953 01/15/2014 08:34 AM Aaron Marcuse-Kubitza

web/links/index.htm: updated to Firefox bookmarks. Quick links: added VegBIEN FAQ.

11948 01/14/2014 09:30 PM Aaron Marcuse-Kubitza

web/links/index.htm: updated to Firefox bookmarks. Quick links: removed page descriptions, which clutter up the quick links list

11947 01/14/2014 09:28 PM Aaron Marcuse-Kubitza

web/links/index.htm: updated to Firefox bookmarks. Quick links: added link to meetings

11946 01/14/2014 09:14 PM Aaron Marcuse-Kubitza

web/links/index.htm: updated to Firefox bookmarks. Quick links: reordered in the order they should apper to visitors to the BIEN links page, rather than to me in the bookmarks toolbar.

11945 01/14/2014 09:04 PM Aaron Marcuse-Kubitza

web/links/index.htm: updated to Firefox bookmarks. updated favicons.

11944 01/14/2014 08:56 PM Aaron Marcuse-Kubitza

web/links/index.htm: updated to Firefox bookmarks. added links for sPlot and iPlant open-sourcing.

11935 12/20/2013 05:41 PM Aaron Marcuse-Kubitza

web/links/index.htm: updated to Firefox bookmarks. open-sourcing BIEN: added links for VegBank's license (GPLv2), and how these terms apply to us (a diff of our changes is not GPL-ed under GPLv2, although it is claimed to be GPL-ed under GPLv3)

11919 12/17/2013 07:28 AM Aaron Marcuse-Kubitza

web/links/index.htm: updated to Firefox bookmarks. added links for fixing the "App Store is temporarily unavailable" error (turn on Spotlight) and modifying a running shell script (unlink it first).

11798 12/03/2013 04:59 AM Aaron Marcuse-Kubitza

web/links/index.htm: updated to Firefox bookmarks. PostgreSQL: added links for troubleshooting out-of-memory errors, which show up (cryptically) as "The database system is in recovery mode" errors in processes running at the time the out-of-memory condition occurred.

11737 11/25/2013 02:58 PM Aaron Marcuse-Kubitza

web/links/index.htm: updated to Firefox bookmarks. added API writing links, including the best quotes from a Google developer's PowerPoint on the topic.

11722 11/21/2013 01:59 PM Aaron Marcuse-Kubitza

web/links/index.htm: updated to Firefox bookmarks. BIEN: added DataONE compatibility links.

11703 11/20/2013 11:38 PM Aaron Marcuse-Kubitza

web/links/index.htm: updated to Firefox bookmarks. BIEN: open-sourcing: added UArizona and iPlant IP policies, which are relevant to Brad's numerous documentation and schema-modeling contributions in our repository (most done while he was an iPlant employee).

11699 11/19/2013 09:21 PM Aaron Marcuse-Kubitza

web/links/index.htm: updated to Firefox bookmarks. BIEN: open-sourcing: added potential licenses we could use (public domain/CC0, BSD, GNU Verbatim Copying License, not CC-BY because incompatible w/ GPL).

11698 11/19/2013 08:31 PM Aaron Marcuse-Kubitza

web/links/index.htm: updated to Firefox bookmarks. BIEN: added links related to open-sourcing it, including the "Request to Open Source Software" form, the funding sources that need to be included in it, and part of the delegation of authority chain (from the UC Regents) that authorizes the open-sourcing.

11694 11/18/2013 12:10 PM Aaron Marcuse-Kubitza

web/links/index.htm: updated to Firefox bookmarks. upgrading to PostgreSQL 9.3: added Linux pg_upgrade steps and install instructions. added Mac PostGIS, psycopg2 install steps. added note that after installing, you need to restore config values that the upgrade reset: in pgAdmin > Preferences > Query tool > Query editor, set Max characters per column back to -1 (to avoid cells being truncated). (this is not a bug in PostgreSQL, only in pgAdmin, and does not signal a need to downgrade.)

11665 11/14/2013 07:19 AM Aaron Marcuse-Kubitza

bugfix: lib/Firefox_bookmarks.reformat.csv: remove empty <DD> tags (which Firefox now adds for all bookmarks) so they don't create a blank space on the page

11664 11/14/2013 07:16 AM Aaron Marcuse-Kubitza

bugfix: lib/Firefox_bookmarks.reformat.csv: don't prepend "page's description:" to empty <DD> tags, which Firefox now adds for all bookmarks, even if they don't have a description

11663 11/14/2013 07:06 AM Aaron Marcuse-Kubitza

web/links/index.htm: updated to Firefox bookmarks. added instructions for upgrading PostgreSQL to 9.3, and some GBIF links.

11649 11/13/2013 04:50 PM Aaron Marcuse-Kubitza

web/.htaccess: mod_autoindex: show .* files which are normally hidden, because these are important parts of our codebase. (the leading . is not used for access controls.) .svn folders will remain hidden to avoid clutter.

11646 11/13/2013 01:07 AM Aaron Marcuse-Kubitza

web/links/index.htm: updated to Firefox bookmarks. added links related to PostgreSQL plain-text pkeys and the GBIF data use agreement (which is apparently much less restrictive than the LoA we signed, and would even allow the data to be public). vegetation data: placed links into subfolders by datasource.

11403 10/22/2013 08:34 PM Aaron Marcuse-Kubitza

web/links/index.htm: updated to Firefox bookmarks. added links for EER models, data management plans. put PostgreSQL before MySQL because we have found PostgreSQL to be a much more capable database system, even though it lacks some of MySQL's user-friendly features.

11372 10/19/2013 04:33 PM Aaron Marcuse-Kubitza

web/links/index.htm: updated to Firefox bookmarks. PostgreSQL: ALTER TABLE: added documentation about disabling of foreign key triggers, which is only possible by the superuser. note that marking a foreign key constraint as NOT VALID does not disable the trigger, so NOT VALID cannot be used for this purpose. this would be used to add fkeys from core VegBIEN tables to validation results tables such as the geoscrubbing results, without needing to import the validation results directly into core VegBIEN (which is time-consuming and currently must be done before input data is loaded, requiring a datasource reload to add geoscrubbing results).

11246 10/10/2013 03:07 PM Aaron Marcuse-Kubitza

web/links/index.htm: updated to Firefox bookmarks. updated favicons.

11245 10/10/2013 02:57 PM Aaron Marcuse-Kubitza

web/links/index.htm: updated to Firefox bookmarks. sudo: added instructions to turn off incorrect password e-mails.

11186 10/09/2013 10:43 AM Aaron Marcuse-Kubitza

bugfix: web/people/Brad_Boyle/.htaccess: only forward requests for a term defined by Brad to the attribution/ subdir, so that Brad.vegpath.org shows a directory listing instead of forwarding right to the attribution doc

11185 10/09/2013 10:33 AM Aaron Marcuse-Kubitza

bugfix: web/people/Brad_Boyle/.htaccess: set %{ENV:innermost_dir} to Brad_Boyle

11184 10/09/2013 10:28 AM Aaron Marcuse-Kubitza

added web/people/Brad_Boyle/data_provenance/ (BIEN database entities related to data provenance and ownership.docx)

11183 10/09/2013 09:56 AM Aaron Marcuse-Kubitza

bugfix: web/people/Brad_Boyle/attribution/.htaccess: \-escape the %s so that they aren't treated as backreferences. set the [redirect] flag so that the downloaded file has the correct filename (BIEN 3 data use and attribution.docx instead of attribution).

11182 10/09/2013 09:49 AM Aaron Marcuse-Kubitza

bugfix: web/people/Brad_Boyle/attribution/.htaccess: use %20 instead of + because the Apache server apparently doesn't translate + to space correctly

11181 10/09/2013 09:47 AM Aaron Marcuse-Kubitza

bugfix: web/people/Brad_Boyle/attribution/.htaccess: link to the VegBIEN subdir in /exchange_schemas instead of the main /VegBIEN because there are actually two VegBIEN subdirs, and the main one instead points to /datasources/VegBIEN

11180 10/09/2013 09:45 AM Aaron Marcuse-Kubitza

added web/people/Brad_Boyle/ with attribution/ subdir for BIEN 3 data use and attribution.docx

11092 09/27/2013 06:31 PM Aaron Marcuse-Kubitza

web/links/index.htm: updated to Firefox bookmarks. added Java client- and server-side links. web: split into client- and server-side folders.

11073 09/24/2013 12:54 PM Aaron Marcuse-Kubitza

web/links/index.htm: updated to Firefox bookmarks. added PostgreSQL links.

11039 09/21/2013 10:17 PM Aaron Marcuse-Kubitza

web/.htaccess: mod_autoindex: IndexHeadInsert: use IndexStyleSheet for stylesheet link instead

11034 09/21/2013 09:42 PM Aaron Marcuse-Kubitza

bugfix: web/.htaccess: mod_autoindex: IndexOptions: use +HTMLTable to ensure that the contents are always displayed in an HTML table, even when a header file is provided with HeaderName (which turns off the default HTML table for some reason)

10894 09/09/2013 02:04 PM Aaron Marcuse-Kubitza

web/links/index.htm: updated to Firefox bookmarks. MySQL: added steps to add a user if you are not root but have sudo access.

10837 08/30/2013 06:28 PM Aaron Marcuse-Kubitza

fix: web/links/index.htm: PostgreSQL: vacuuming: moved info about autovacuum process being aborted to correct bookmark

10836 08/30/2013 06:25 PM Aaron Marcuse-Kubitza

web/links/index.htm: updated to Firefox bookmarks. PostgreSQL: added info on vacuuming and analyzing.

10705 08/22/2013 01:04 PM Aaron Marcuse-Kubitza

web/links/index.htm: updated to Firefox bookmarks. Gmvault: added steps to do full backup and to backup only new e-mails

10703 08/22/2013 11:12 AM Aaron Marcuse-Kubitza

web/links/index.htm: updated to Firefox bookmarks. Gmvault: added run instructions for Mac.

10702 08/22/2013 10:50 AM Aaron Marcuse-Kubitza

web/links/index.htm: updated to Firefox bookmarks. added link to Gmvault (Gmail backup), which wouldn't install for me on Mac (but that may be because I'm using 10.8, and Gmvault is for 10.7/10.6)

10670 08/18/2013 07:58 PM Aaron Marcuse-Kubitza

bugfix: web/.htaccess: auto-detect dotpath in query string: need to include the path ($0) in the replacement, to avoid reverting to the root dir. (mod_rewrite replacements are not like relative URLs, which would interpret ?... as being relative to the current path, not the root.)

10669 08/18/2013 07:56 PM Aaron Marcuse-Kubitza

bugfix: web/.htaccess: auto-detect dotpath in query string: added missing $ at end of regexp

10612 08/07/2013 08:12 AM Aaron Marcuse-Kubitza

bugfix: web/.htaccess: parse dotpath in query string: make dotpath replacement start with ./ instead of / (which would incorrectly create an absolute URL path). this bug only appears when there is a trailing /, because this causes the matched text to be empty instead of a filesystem path with leading /.

10611 08/07/2013 08:04 AM Aaron Marcuse-Kubitza

bugfix: web/.htaccess: parse dotpath in query string: redirect so REQUEST_URI is populated from REQUEST_FILENAME: need to use - instead of $0 as the redirect destination so that REQUEST_FILENAME is used instead of the empty REQUEST_URI (i.e. the redirect vars are left untouched)

10610 08/07/2013 07:45 AM Aaron Marcuse-Kubitza

bugfix: web/.htaccess: parse dotpath in query string: need to add trailing / if dotpath so that dest path is URL path, not filesystem path (when trailing / missing, matched path is filesystem path)

10514 07/31/2013 01:00 AM Aaron Marcuse-Kubitza

added web/servers/vegbiendev/db/my/, which forwards to MySQL instead of PostgreSQL

10513 07/31/2013 01:00 AM Aaron Marcuse-Kubitza

web/servers/vegbiendev/db/: moved PostgreSQL engine to separate pg/ subdir to allow for other engines

10306 07/18/2013 08:23 AM Aaron Marcuse-Kubitza

web/links/index.htm: updated to Firefox bookmarks. added link to Brian Enquist's fractals video on PBS NOVA.

10282 07/14/2013 05:18 AM Aaron Marcuse-Kubitza

web/links/index.htm: updated to Firefox bookmarks. moved Linux, Mac into Unix folder. added instructions to remove old Linux kernels, which fill up the /boot partition. added instructions to force sed to use raw binary mode instead of UTF-8 when UTF-8 is set in the environment. added methods of implementing DB disk space quotas in Postgres. added comparison on my Mac's CPU (2.66 GHz Intel Core i5) with vegbiendev's (2.44 GHz AMD Phenom X4). my Mac's seems to be much faster, so it might make sense to check that the Thor CPUs are faster than the Vis Lab computers' CPUs the next time it gets upgraded. (these diffs can be seen in WinMerge with Moved block detection on. see /README.TXT > WinMerge setup for details.)

10175 07/06/2013 04:02 PM Aaron Marcuse-Kubitza

web/links/index.htm: updated to Firefox bookmarks. removed dead favicons. PostgreSQL: added bookmarks about triggers.

10099 06/28/2013 02:50 AM Aaron Marcuse-Kubitza

web/links/index.htm: updated to Firefox bookmarks. grouped version control systems into new version control folder.

9997 06/20/2013 10:58 PM Aaron Marcuse-Kubitza

web/links/index.htm: updated to Firefox bookmarks. sorted NCEAS bookmarks to put homepage and support pages first.

9854 06/12/2013 03:25 AM Aaron Marcuse-Kubitza

*{.sh,run}: use simpler .rel() instead of `. "$(dirname "${BASH_SOURCE0}")"/...` for relative includes

9786 06/09/2013 12:39 PM Aaron Marcuse-Kubitza

lib/Firefox_bookmarks.reformat.csv: unescape HTML in page's description, such as links to more info. this is necessary to properly render the persistent shells link in the screen > scrollback folder description.

9783 06/09/2013 11:52 AM Aaron Marcuse-Kubitza

web/links/index.htm: updated to Firefox bookmarks. `screen`: scrollback: added link to our wiki page on persistent shells, which are a better way to support reconnecting.

9782 06/09/2013 11:36 AM Aaron Marcuse-Kubitza

web/links/index.htm: updated to Firefox bookmarks. added bookmarks about the `screen` command, especially how to access the scrollback. resorted several folders alphabetically.

9614 05/29/2013 03:48 PM Aaron Marcuse-Kubitza

web/links/index.htm: updated to Firefox bookmarks. some broken favicons have also been fixed, by reopening bookmark in Firefox. (this will only update a favicon if there is a newer version. to delete a favicon completely, use Firefox's SQLite Manager plugin.)

9613 05/29/2013 10:17 AM Aaron Marcuse-Kubitza

web/index.php: use XHTML DOCTYPE to match what's used by mod_autoindex. this requires some adjustments in spacing for XHTML's slightly different formatting

9612 05/29/2013 10:15 AM Aaron Marcuse-Kubitza

bugfix: web/.htaccess: need to do DirectoryIndex redirects before checking for existing file/dir, because a DirectoryIndexed dir is existing but still needs to be redirected to the index.* file

9611 05/29/2013 10:01 AM Aaron Marcuse-Kubitza

web/.htaccess: mod_autoindex: use the main.css stylesheet to match the look-and-feel of index.php

9610 05/29/2013 10:00 AM Aaron Marcuse-Kubitza

web/.htaccess: mod_autoindex: Note that some listed files are not web-accessible: use ' instead of " to avoid \-escaping embedded "

9609 05/29/2013 09:39 AM Aaron Marcuse-Kubitza

web/.htaccess: mod_autoindex: sort by description when provided, to allow setting a custom (non-alphabetical) sort order using AddDescription

9608 05/29/2013 09:37 AM Aaron Marcuse-Kubitza

web/.htaccess: mod_autoindex: added note that some listed files are not web-accessible. they will produce a "Forbidden" error when clicked.

9607 05/29/2013 09:36 AM Aaron Marcuse-Kubitza

bugfix: web/index.php: added space between the full directory index and the preceding content

9606 05/29/2013 09:35 AM Aaron Marcuse-Kubitza

web/index.php: moved the full directory index within the rest of the document body

9605 05/29/2013 08:58 AM Aaron Marcuse-Kubitza

web/index.php: include full directory index, since the URL patterns list is just a subset of the content available through vegpath.org

9604 05/29/2013 08:25 AM Aaron Marcuse-Kubitza

web/.htaccess: added mod_autoindex IndexOptions, in particular FoldersFirst

9603 05/29/2013 05:26 AM Aaron Marcuse-Kubitza

bugfix: web/.htaccess: changed "mod_dir listing"->"mod_autoindex listing" because mod_dir does not actually handle the autogenerated listings

9602 05/29/2013 05:24 AM Aaron Marcuse-Kubitza

bugfix: web/.htaccess: DirectoryIndex: use disabled instead of on because on is actually treated as a filename, and does not invoke mod_autoindex. the DirectoryIndex directive and the mod_dir module actually apply only to manual index files, not to autogenerated dir listings (which are handled by mod_autoindex).

9601 05/29/2013 04:58 AM Aaron Marcuse-Kubitza

web/index.php: removed no longer needed custom alias j.mp/vegpath# for when page reached through vegbiendev.nceas.ucsb.edu, because vegpath.org is a much more reliable domain than the previous path.vg, and a separate way to reach VegPath when path.vg is down is no longer needed

9600 05/29/2013 04:43 AM Aaron Marcuse-Kubitza

web/.htaccess: <dir>/all forces mod_dir listing: use simpler $mod_dir_listing env var instead of query string modification to indicate that an explicit mod_dir listing should be displayed. this causes /all to replace ?index=1 as the way to force a mod_dir listing. note that the %{ENV:...} test needs to use $REDIRECT_mod_dir_listing instead of $mod_dir_listing, because a redirect will occur between the /all rule and the index.* rule, causing all env vars to be prepended with REDIRECT_ .

9599 05/29/2013 03:48 AM Aaron Marcuse-Kubitza

web/.htaccess: <dir>/all forces mod_dir listing, as a simpler syntax than ?index=1

9598 05/29/2013 03:28 AM Aaron Marcuse-Kubitza

web/.htaccess: for dirs, redirect to index.*: allow requesting a mod_dir listing instead with ?index=1

9597 05/29/2013 03:26 AM Aaron Marcuse-Kubitza

web/.htaccess: handle DirectoryIndex redirects in a RewriteRule instead of with `DirectoryIndex index`, so that RewriteConds can be used to configure when index.* is used as the DirectoryIndex instead of a mod_dir listing

9596 05/29/2013 02:30 AM Aaron Marcuse-Kubitza

web/.htaccess: handle DirectoryIndex subrequests when there is no DirectoryIndex: moved comment about -F subrequest after line it applies to

9594 05/29/2013 02:19 AM Aaron Marcuse-Kubitza

web/.htaccess: RewriteRules: added standard [discardpath,noescape,qsappend] options where missing (these should be the default, but aren't)

9389 05/15/2013 10:26 PM Aaron Marcuse-Kubitza

web/links/index.htm: updated to Firefox bookmarks. Mountain Lion upgrade: added Python psycopg2, Python OrderedDict, X11.