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Name Size Revision Age Author Comment
  _archive 1598 over 12 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  analysis 3076 over 12 years Aaron Marcuse-Kubitza Added top-level analysis dir for range modeling
  backups 10031 over 11 years Aaron Marcuse-Kubitza bugfix: backups/.rsync_filter.download: need to...
  bin 10049 over 11 years Aaron Marcuse-Kubitza bugfix: bin/make: do not alter the PATH passed ...
  config 7801 over 11 years Aaron Marcuse-Kubitza root Makefile: VegBIEN DB: mk_db: Added command...
  exports 9928 over 11 years Aaron Marcuse-Kubitza added exports/_archive/
  inputs 10058 over 11 years Aaron Marcuse-Kubitza inputs/FIA/_src/Makefile: Extraction: $(zips): ...
  lib 10059 over 11 years Aaron Marcuse-Kubitza bugfix: lib/sh/util.sh: .rel(): first use realp...
  mappings 9882 over 11 years Aaron Marcuse-Kubitza mappings/VegCore-VegBIEN.csv: genus->taxonlabel...
  planning 9978 over 11 years Aaron Marcuse-Kubitza planning/workflow/bien3_architecture.pptx: stag...
  schemas 9991 over 11 years Aaron Marcuse-Kubitza schemas/VegBIEN/taxonomy/higherPlantGroup.xlsx....
  web 9997 over 11 years Aaron Marcuse-Kubitza web/links/index.htm: updated to Firefox bookmar...
.htaccess 326 Bytes 8771 over 11 years Aaron Marcuse-Kubitza /.htaccess: use canonical URL without symlinks
.rsync_filter.upload 33 Bytes 10042 over 11 years Aaron Marcuse-Kubitza /.rsync_ignore: temp files: hide them on upload...
.rsync_ignore 12 Bytes 10042 over 11 years Aaron Marcuse-Kubitza /.rsync_ignore: temp files: hide them on upload...
Makefile 12.5 KB 9917 over 11 years Aaron Marcuse-Kubitza bugfix: /Makefile: postgres-Linux: phpPgAdmin: ...
README.TXT 23 KB 10040 over 11 years Aaron Marcuse-Kubitza /README.TXT: Maintenance: synchronization: fixe...
fix_perms 97 Bytes 7560 almost 12 years Aaron Marcuse-Kubitza Added root fix_perms
map 1001 Bytes 6949 almost 12 years Aaron Marcuse-Kubitza vegbien_dest: Changed default $prefix to "", so...
new_terms.csv 38.1 KB 7222 almost 12 years Aaron Marcuse-Kubitza new_terms.csv: Regenerated
run 433 Bytes 9916 over 11 years Aaron Marcuse-Kubitza /run: geoscrub_input/make(): documented runtime...
unmapped_terms.csv 13.1 KB 7201 almost 12 years Aaron Marcuse-Kubitza **/new_terms.csv, **/unmapped_terms.csv: Regene...

Latest revisions

# Date Author Comment
10059 06/26/2013 12:19 PM Aaron Marcuse-Kubitza

bugfix: lib/sh/util.sh: .rel(): first use realpath() on BASH_SOURCE1 in case it's a symlink (as it is for bin/make)

10058 06/26/2013 12:00 PM Aaron Marcuse-Kubitza

inputs/FIA/_src/Makefile: Extraction: $(zips): use $(allZips) containing a zip for each state so that states that have not yet been downloaded and extracted (or had an empty dir created for them) will be downloaded. previously, the extract target only expanded existing zips but did not download new zips unless no zips had yet been downloaded. (this had been necessary because some states do not have a download, and the download of them would be continuously retried every time the Makefile was run.)

10057 06/26/2013 11:51 AM Aaron Marcuse-Kubitza

bugfix: inputs/FIA/_src/Makefile: `%: %.zip`: if unzip fails because the download does not exist, create an empty dir for the state instead of aborting make

10056 06/26/2013 11:33 AM Aaron Marcuse-Kubitza

inputs/FIA/_src/Makefile: use curl instead of wget because that is also available on Mac

10055 06/26/2013 11:32 AM Aaron Marcuse-Kubitza

bugfix: lib/sh/web.sh: curl(): use --fail so that curl returns a nonzero exit status on error (e.g. file not found) instead of appearing to exit successfully but outputting an error HTML document instead of the file

10054 06/26/2013 11:05 AM Aaron Marcuse-Kubitza

inputs/FIA/SUBPLOT/map.csv, import: prepended * to all FIA terms to clearly distinguish them from the VegCore terms. this is the standard convention for all datasources, to indicate which terms have not yet been mapped, but was not yet implemented at the beginning of new-style import (the FIA refresh was the first new-style datasource)....

10053 06/26/2013 08:59 AM Aaron Marcuse-Kubitza

inputs/FIA/import_order.txt: added remaining src tables, whose runscripts will be invoked in the order listed by lib/runscripts/datasrc_dir.run

10052 06/26/2013 08:58 AM Aaron Marcuse-Kubitza

added inputs/FIA/*/_no_import to src tables that are joined together in occurrence_all and should not also be imported separately once they are in import_order.txt

10051 06/26/2013 07:55 AM Aaron Marcuse-Kubitza

inputs/GBIF/run: inherit from lib/runscripts/datasrc_dir.run, which uses import_order.txt to forward calls to the subdirs

10050 06/26/2013 07:54 AM Aaron Marcuse-Kubitza

added blank runscripts inputs/GBIF/Source/run, Specimen/run because they are in import_order.txt (used by lib/runscripts/datasrc_dir.run)

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