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Name Size Revision Age Author Comment
  _archive 1598 over 12 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  analysis 3076 over 12 years Aaron Marcuse-Kubitza Added top-level analysis dir for range modeling
  backups 10031 over 11 years Aaron Marcuse-Kubitza bugfix: backups/.rsync_filter.download: need to...
  bin 10140 over 11 years Aaron Marcuse-Kubitza bugfix: bin/map: in_is_db: inline metadata valu...
  config 7801 over 11 years Aaron Marcuse-Kubitza root Makefile: VegBIEN DB: mk_db: Added command...
  exports 9928 over 11 years Aaron Marcuse-Kubitza added exports/_archive/
  inputs 10167 over 11 years Aaron Marcuse-Kubitza bugfix: inputs/input.Makefile: SVN: add: don't ...
  lib 10165 over 11 years Aaron Marcuse-Kubitza lib/sql_io.py: put_table() (column-based import...
  mappings 9882 over 11 years Aaron Marcuse-Kubitza mappings/VegCore-VegBIEN.csv: genus->taxonlabel...
  planning 10142 over 11 years Aaron Marcuse-Kubitza planning/workflow/validation/: archived BIEN2 v...
  schemas 10161 over 11 years Aaron Marcuse-Kubitza schemas/util.sql: type_qual(), type_qual_name()...
  web 10099 over 11 years Aaron Marcuse-Kubitza web/links/index.htm: updated to Firefox bookmar...
.htaccess 326 Bytes 8771 over 11 years Aaron Marcuse-Kubitza /.htaccess: use canonical URL without symlinks
.rsync_filter.upload 33 Bytes 10042 over 11 years Aaron Marcuse-Kubitza /.rsync_ignore: temp files: hide them on upload...
.rsync_ignore 12 Bytes 10042 over 11 years Aaron Marcuse-Kubitza /.rsync_ignore: temp files: hide them on upload...
Makefile 12.5 KB 10126 over 11 years Aaron Marcuse-Kubitza bugfix: *Makefile: $(asAdmin) invocations of Po...
README.TXT 23.2 KB 10093 over 11 years Aaron Marcuse-Kubitza bugfix: /README.TXT: Maintenance: syncing ~/bie...
fix_perms 97 Bytes 7560 over 11 years Aaron Marcuse-Kubitza Added root fix_perms
map 1001 Bytes 6949 almost 12 years Aaron Marcuse-Kubitza vegbien_dest: Changed default $prefix to "", so...
new_terms.csv 38.1 KB 7222 almost 12 years Aaron Marcuse-Kubitza new_terms.csv: Regenerated
run 433 Bytes 9916 over 11 years Aaron Marcuse-Kubitza /run: geoscrub_input/make(): documented runtime...
unmapped_terms.csv 13.1 KB 7201 almost 12 years Aaron Marcuse-Kubitza **/new_terms.csv, **/unmapped_terms.csv: Regene...

Latest revisions

# Date Author Comment
10167 07/06/2013 01:45 PM Aaron Marcuse-Kubitza

bugfix: inputs/input.Makefile: SVN: add: don't add subdirs for datasources marked _no_import (e.g. datasources which only have an inputs/ dir to be listed in VegPath)

10166 07/06/2013 11:29 AM Aaron Marcuse-Kubitza

bugfix: inputs/*/Source/data.csv for new-style datasources: need to include a blank row (plus a blank header) so that the metadata values are imported at least once instead of zero times, now that there is an installed staging table that will be iterated over. the blank row did not used to be necessary, because db_xml.put_table() has a special case for metadata-only tables with no installed table, which avoids iterating over the table's rows.

10165 07/03/2013 10:48 PM Aaron Marcuse-Kubitza

lib/sql_io.py: put_table() (column-based import): complexity note: clarified that INSERT RETURNING throws an error on duplicate instead of returning the existing row. added blank line after ΒΆ for readability.

10164 07/03/2013 10:44 PM Aaron Marcuse-Kubitza

lib/sql_io.py: put_table() (column-based import): warning about triggers populating unique constraint-covered columns: corrected limitation to include only the unique constraint used to do the DISTINCT ON, since other unique constraints are not affected by column-based import. note that the primary key will normally not be the DISTINCT ON constraint, so trigger-populated natural keys are supported unless the input table contains duplicate rows for some generated keys.

10163 07/03/2013 10:20 PM Aaron Marcuse-Kubitza

inputs/*/Source/ for new-style datasources: use an actual staging table instead of a metadata-only table, so that metadata values can be stored in the staging table instead of the map.csv (as will be required by new-style import)

10162 07/03/2013 08:21 PM Aaron Marcuse-Kubitza

inputs/input.Makefile: SVN: $(svnFilesGlob): added data.csv, used to store versioned data (such as the empty data.csv used by Source/ tables which have their metadata in the map table instead)

10161 07/03/2013 07:45 PM Aaron Marcuse-Kubitza

schemas/util.sql: type_qual(), type_qual_name(): added comments to distinguish these similarly-named functions, one of which gets a type qualifier and the other of which gets a qualified name (not the name of a type qualifier, which one might otherwise assume)

10160 07/03/2013 07:39 PM Aaron Marcuse-Kubitza

schemas/util.sql: typeof(): support expressions that are not relative to a table (which do not have a table_ param). note that this requires removing the STRICT qualifier, so that NULL expressions will now produce an error instead of passing through as NULL.

10159 07/03/2013 07:10 PM Aaron Marcuse-Kubitza

schemas/VegCore/VegCore.ERD.mwb: relationships legend: removed inheritance of base_class from record, so that the IS-A label would not confusingly appear to apply to the record connector stub instead of to the solid line between base_class and derived_class

10158 07/03/2013 06:51 PM Aaron Marcuse-Kubitza

bugfix: schemas/util.sql: col_names(): need to exclude dropped columns (which remain included in the pg_attribute table until the next tuple rewrite), by filtering on `NOT attisdropped`. lib/sql.py table_col_names() is not affected by this because it is able to access the column names from the DB driver directly, after performing `SELECT * FROM table LIMIT 0`.

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