Revision 10191
Added by Aaron Marcuse-Kubitza almost 11 years ago
| bin/map | ||
|---|---|---|
| 315 | 315 |
col_names_ct = len(col_names) |
| 316 | 316 |
col_idxs = util.list_flip(col_names) |
| 317 | 317 |
col_names_map = dict(zip(col_names, col_names)) |
| 318 |
prefixes_simp = map(maps.simplify, prefixes) |
|
| 319 | 318 |
|
| 320 |
# Resolve prefixes
|
|
| 319 |
# Resolve names
|
|
| 321 | 320 |
mappings_orig = mappings[:] # save a copy |
| 322 | 321 |
mappings[:] = [] # empty existing elements |
| 323 | 322 |
for in_, out in mappings_orig: |
| 324 | 323 |
if is_metadata(in_): mappings.append([in_, out]) |
| 325 | 324 |
else: |
| 326 |
try: |
|
| 327 |
cols = get_with_prefix(col_names_map, prefixes_simp, |
|
| 328 |
in_) |
|
| 325 |
try: cols = get_with_prefix(col_names_map, [], in_) |
|
| 329 | 326 |
except KeyError: pass |
| 330 | 327 |
else: |
| 331 | 328 |
mappings[len(mappings):] = [[db_xml.ColRef( |
| ... | ... | |
| 433 | 430 |
return rows |
| 434 | 431 |
|
| 435 | 432 |
def get_value(in_, row): |
| 436 |
in_ = './{'+(','.join(strings.with_prefixes(
|
|
| 437 |
['']+prefixes, in_)))+'}' # also with no prefix |
|
| 438 | 433 |
nodes = xpath.get(row, in_, allow_rooted=False) |
| 439 | 434 |
if nodes != []: return xml_dom.value(nodes[0]) |
| 440 | 435 |
else: return None |
Also available in: Unified diff
bin/map: removed no longer used support for map.csv input column prefixes (expand out the prefixes instead). this used to be used by SpeciesLink to use just one mapping for a single term with multiple DwC namespaces, but was replaced with an explicit, ordered rather than implicit, unordered /_alt-ing together of the terms.