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53
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aaronmk
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#!/bin/bash
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# Tests map
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100
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aaronmk
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# Usage: env [debug=1] [n=<num-rows>] self
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53
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aaronmk
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selfDir="$(dirname -- "$0")"
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cd "$selfDir"
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test -n "$n" || n=2
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let n++
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103
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aaronmk
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in=NYBG.csv
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out=NYBG.xml
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53
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aaronmk
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103
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aaronmk
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head -"$n" "input/$in"|../map ../../mappings/NYBG-VegX.organisms.csv \
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>"output/$out" && diff "accepted_output/$out" "output/$out"
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88
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aaronmk
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100
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aaronmk
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test -z "$debug" && toVegbank=map2vegbank || toVegbank=map
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103
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aaronmk
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head -"$n" "input/$in"|"../$toVegbank" \
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../../mappings/joins/NYBG-VegBank.organisms.csv
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