#!/bin/bash

# Tests map

# Usage: env [debug=1] [n=<num-rows>] self

selfDir="$(dirname -- "$0")"

cd "$selfDir"

test -n "$n" || n=2

let n++

in=NYBG.csv

out=NYBG.xml

head -"$n" "input/$in"|../map ../../mappings/NYBG-VegX.organisms.csv \

>"output/$out" && diff "accepted_output/$out" "output/$out"

test -z "$debug" && toVegbank=map2vegbank || toVegbank=map

head -"$n" "input/$in"|"../$toVegbank" \

../../mappings/joins/NYBG-VegBank.organisms.csv